메뉴 건너뛰기




Volumn 298, Issue 4, 2010, Pages

A metabolomics approach using juvenile cystic mice to identify urinary biomarkers and altered pathways in polycystic kidney disease

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER;

EID: 77950798255     PISSN: 1931857X     EISSN: 15221466     Source Type: Journal    
DOI: 10.1152/ajprenal.00722.2009     Document Type: Article
Times cited : (52)

References (54)
  • 2
    • 58149498814 scopus 로고    scopus 로고
    • Unified ultrasonographic diagnostic criteria for polycystic kidney disease
    • Belibi FA, Edelstein CL. Unified ultrasonographic diagnostic criteria for polycystic kidney disease. J Am Soc Nephrol 20: 6-8, 2009.
    • (2009) J Am Soc Nephrol , vol.20 , pp. 6-8
    • Belibi, F.A.1    Edelstein, C.L.2
  • 3
    • 0020639120 scopus 로고
    • Evidence for a substrate cycle between AMP and adenosine in isolated hepatocytes
    • Bontemps F, Van den Berghe G, Hers HG. Evidence for a substrate cycle between AMP and adenosine in isolated hepatocytes. Proc Natl Acad Sci USA 80: 2829-2833, 1983.
    • (1983) Proc Natl Acad Sci USA , vol.80 , pp. 2829-2833
    • Bontemps, F.1    Van Den Berghe, G.2    Hers, H.G.3
  • 4
    • 20444448822 scopus 로고    scopus 로고
    • PLS dimension reduction for classification with micro-array data
    • Boulesteix AL. PLS dimension reduction for classification with micro-array data. Stat Appl Genet Mol Biol 3: 33, 2004.
    • (2004) Stat Appl Genet Mol Biol , vol.3 , pp. 33
    • Boulesteix, A.L.1
  • 5
    • 34547852206 scopus 로고    scopus 로고
    • WilcoxCV: An R package for fast variable selection in cross-validation
    • Boulesteix AL. WilcoxCV: an R package for fast variable selection in cross-validation. Bioinformatics 23: 1702-1704, 2007.
    • (2007) Bioinformatics , vol.23 , pp. 1702-1704
    • Boulesteix, A.L.1
  • 6
    • 49149097608 scopus 로고    scopus 로고
    • Strategies to inhibit cyst formation in ADPKD
    • Calvet JP. Strategies to inhibit cyst formation in ADPKD. Clin J Am Soc Nephrol 3: 1205-1211, 2008.
    • (2008) Clin J Am Soc Nephrol , vol.3 , pp. 1205-1211
    • Calvet, J.P.1
  • 7
    • 77950847171 scopus 로고
    • Studies on purine metabolism. III. the fate of guanosine and adenosine in the dog
    • Cerecedo LR, Allen FW. Studies on purine metabolism. III. The fate of guanosine and adenosine in the dog. J Biol Chem 107: 421-424, 1934.
    • (1934) J Biol Chem , vol.107 , pp. 421-424
    • Cerecedo, L.R.1    Allen, F.W.2
  • 8
    • 49149119646 scopus 로고    scopus 로고
    • Approaches to testing new treatments in autosomal dominant polycystic kidney disease: Insights from the CRISP and HALT-PKD studies
    • Chapman AB. Approaches to testing new treatments in autosomal dominant polycystic kidney disease: insights from the CRISP and HALT-PKD studies. Clin J Am Soc Nephrol 3: 1197-1204, 2008.
    • (2008) Clin J Am Soc Nephrol , vol.3 , pp. 1197-1204
    • Chapman, A.B.1
  • 9
    • 34247189003 scopus 로고    scopus 로고
    • A phase IIB pilot study of the safety and efficacy of tolvaptan, a vasopressin V2 receptor antagonist (V2RA), in patients with ADPKD (Abstract)
    • Chapman AB, Torres VE, Grantham JJ, Shoaf SE, Ouyang JJ, Czerweic FS. A phase IIB pilot study of the safety and efficacy of tolvaptan, a vasopressin V2 receptor antagonist (V2RA), in patients with ADPKD (Abstract). J Am Soc Nephrol 16: 68A, 2005.
    • (2005) J Am Soc Nephrol , vol.16
    • Chapman, A.B.1    Torres, V.E.2    Grantham, J.J.3    Shoaf, S.E.4    Ouyang, J.J.5    Czerweic, F.S.6
  • 10
    • 2642566238 scopus 로고    scopus 로고
    • Metabolomics - A new exciting field within the "omics" sciences
    • Dettmer K, Hammock BD. Metabolomics - a new exciting field within the "omics" sciences. Environ Health Perspect 112: A396-A397, 2004.
    • (2004) Environ Health Perspect , vol.112
    • Dettmer, K.1    Hammock, B.D.2
  • 11
    • 26444491700 scopus 로고    scopus 로고
    • Setup and annotation of metabolomic experiments by integrating biological and mass spectrometric metadata
    • Fiehn O, Wohlgemuth G, Scholz M. Setup and annotation of metabolomic experiments by integrating biological and mass spectrometric metadata. Proc Lect Notes Bioinformatics 3615: 224-239, 2005.
    • (2005) Proc Lect Notes Bioinformatics , vol.3615 , pp. 224-239
    • Fiehn, O.1    Wohlgemuth, G.2    Scholz, M.3
  • 16
    • 39749093133 scopus 로고    scopus 로고
    • Polycystic kidney diseases: From molecular discoveries to targeted therapeutic strategies
    • Ibraghimov-Beskrovnaya O, Bukanov N. Polycystic kidney diseases: from molecular discoveries to targeted therapeutic strategies. Cell Mol Life Sci 65: 605-619, 2008.
    • (2008) Cell Mol Life Sci , vol.65 , pp. 605-619
    • Ibraghimov-Beskrovnaya, O.1    Bukanov, N.2
  • 17
    • 75549090213 scopus 로고    scopus 로고
    • KEGG for representation and analysis of molecular networks involving diseases and drugs
    • Kanehisa M, Goto S, Furumichi M, Tanabe M, Hirakawa M. KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res 38: D355-D360, 2009.
    • (2009) Nucleic Acids Res , vol.38
    • Kanehisa, M.1    Goto, S.2    Furumichi, M.3    Tanabe, M.4    Hirakawa, M.5
  • 20
    • 39549102648 scopus 로고    scopus 로고
    • Metabolomics in biomarker discovery: Future uses for cancer prevention
    • Kim YS, Maruvada P, Milner JA. Metabolomics in biomarker discovery: future uses for cancer prevention. Future Oncol 4: 93-102, 2008.
    • (2008) Future Oncol , vol.4 , pp. 93-102
    • Kim, Y.S.1    Maruvada, P.2    Milner, J.A.3
  • 21
    • 33947216093 scopus 로고    scopus 로고
    • A comprehensive urinary metabolomic approach for identifying kidney cancer
    • Kind T, Tolstikov V, Fiehn O, Weiss RH. A comprehensive urinary metabolomic approach for identifying kidney cancer. Anal Biochem 363: 185-195, 2007.
    • (2007) Anal Biochem , vol.363 , pp. 185-195
    • Kind, T.1    Tolstikov, V.2    Fiehn, O.3    Weiss, R.H.4
  • 22
    • 67449143228 scopus 로고    scopus 로고
    • Identification of a unique urinary biomarker profile in patients with autosomal dominant polycystic kidney disease
    • Kistler AD, Mischak H, Poster D, Dakna M, Wuthrich RP, Serra AL. Identification of a unique urinary biomarker profile in patients with autosomal dominant polycystic kidney disease. Kidney Int 76: 89-96, 2009.
    • (2009) Kidney Int , vol.76 , pp. 89-96
    • Kistler, A.D.1    Mischak, H.2    Poster, D.3    Dakna, M.4    Wuthrich, R.P.5    Serra, A.L.6
  • 23
    • 70349310440 scopus 로고    scopus 로고
    • Radiation metabolomics. 3. Biomarker discovery in the urine of gamma-irradiated rats using a simplified metabolomics protocol of gas chromatography-mass spectrometry combined with random forests machine learning algorithm
    • Lanz C, Patterson AD, Slavik J, Krausz KW, Ledermann M, Gonzalez FJ, Idle JR. Radiation metabolomics. 3. Biomarker discovery in the urine of gamma-irradiated rats using a simplified metabolomics protocol of gas chromatography-mass spectrometry combined with random forests machine learning algorithm. Radiat Res 172: 198-212, 2009.
    • (2009) Radiat Res , vol.172 , pp. 198-212
    • Lanz, C.1    Patterson, A.D.2    Slavik, J.3    Krausz, K.W.4    Ledermann, M.5    Gonzalez, F.J.6    Idle, J.R.7
  • 24
    • 33750976192 scopus 로고    scopus 로고
    • Autosomal dominant polycystic kidney disease: Role of the renin-angiotensin system in raised blood pressure in progression of renal and cardiovascular disease
    • Lawson CR, Doulton TW, MacGregor GA. Autosomal dominant polycystic kidney disease: role of the renin-angiotensin system in raised blood pressure in progression of renal and cardiovascular disease. J Renin Angiotensin Aldosterone Syst 7: 139-145, 2006.
    • (2006) J Renin Angiotensin Aldosterone Syst , vol.7 , pp. 139-145
    • Lawson, C.R.1    Doulton, T.W.2    MacGregor, G.A.3
  • 26
    • 45849145091 scopus 로고    scopus 로고
    • Application of metabolomics to cardiovascular biomarker and pathway discovery
    • Lewis GD, Asnani A, Gerszten RE. Application of metabolomics to cardiovascular biomarker and pathway discovery. J Am Coll Cardiol 52: 117-123, 2008.
    • (2008) J Am Coll Cardiol , vol.52 , pp. 117-123
    • Lewis, G.D.1    Asnani, A.2    Gerszten, R.E.3
  • 30
    • 0024571828 scopus 로고
    • Hyperuricemia, gout, and autosomal dominant polycystic kidney disease
    • Mejias E, Navas J, Lluberes R, Martinez-Maldonado M. Hyperuricemia, gout, and autosomal dominant polycystic kidney disease. Am J Med Sci 297: 145-148, 1989.
    • (1989) Am J Med Sci , vol.297 , pp. 145-148
    • Mejias, E.1    Navas, J.2    Lluberes, R.3    Martinez-Maldonado, M.4
  • 31
    • 47249117032 scopus 로고    scopus 로고
    • Serum and urinary biomarker signatures for rapid preclinical in vivo assessment of CDK inhibition as a therapeutic approach for PKD
    • Moreno S, Ibraghimov-Beskrovnaya O, Bukanov NO. Serum and urinary biomarker signatures for rapid preclinical in vivo assessment of CDK inhibition as a therapeutic approach for PKD. Cell Cycle 7: 1856-1864, 2008.
    • (2008) Cell Cycle , vol.7 , pp. 1856-1864
    • Moreno, S.1    Ibraghimov-Beskrovnaya, O.2    Bukanov, N.O.3
  • 32
    • 0036956225 scopus 로고    scopus 로고
    • Partial least squares proportional hazard regression for application to DNA microarray survival data
    • Nguyen DV, Rocke DM. Partial least squares proportional hazard regression for application to DNA microarray survival data. Bioinformatics 18: 1625-1632, 2002.
    • (2002) Bioinformatics , vol.18 , pp. 1625-1632
    • Nguyen, D.V.1    Rocke, D.M.2
  • 33
    • 35748957484 scopus 로고    scopus 로고
    • p21 is decreased in polycystic kidney disease and leads to increased epithelial cell cycle progression: Roscovitine augments p21 levels
    • Park JY, Schutzer WE, Lindsley JN, Bagby SP, Oyama TT, Anderson S, Weiss RH. p21 is decreased in polycystic kidney disease and leads to increased epithelial cell cycle progression: roscovitine augments p21 levels. BMC Nephrol 8: 12, 2007.
    • (2007) BMC Nephrol , vol.8 , pp. 12
    • Park, J.Y.1    Schutzer, W.E.2    Lindsley, J.N.3    Bagby, S.P.4    Oyama, T.T.5    Anderson, S.6    Weiss, R.H.7
  • 34
    • 3142673366 scopus 로고    scopus 로고
    • Using the gene ontology for microarray data mining: A comparison of methods and application to age effects in human prefrontal cortex
    • Pavlidis P, Qin J, Arango V, Mann JJ, Sibille E. Using the gene ontology for microarray data mining: a comparison of methods and application to age effects in human prefrontal cortex. Neurochem Res 29: 1213-1222, 2004.
    • (2004) Neurochem Res , vol.29 , pp. 1213-1222
    • Pavlidis, P.1    Qin, J.2    Arango, V.3    Mann, J.J.4    Sibille, E.5
  • 37
    • 0031955488 scopus 로고    scopus 로고
    • The fundamental importance of human galactose metabolism: Lessons from genetics and biochemistry
    • Petry KG, Reichardt JK. The fundamental importance of human galactose metabolism: lessons from genetics and biochemistry. Trends Genet 14: 98-102, 1998.
    • (1998) Trends Genet , vol.14 , pp. 98-102
    • Petry, K.G.1    Reichardt, J.K.2
  • 38
    • 0028351429 scopus 로고
    • Evaluation of ultrasonographic diagnostic criteria for autosomal dominant polycystic kidney disease 1
    • Ravine D, Gibson RN, Walker RG, Sheffield LJ, Kincaid-Smith P, Danks DM. Evaluation of ultrasonographic diagnostic criteria for autosomal dominant polycystic kidney disease 1. Lancet 343: 824-827, 1994.
    • (1994) Lancet , vol.343 , pp. 824-827
    • Ravine, D.1    Gibson, R.N.2    Walker, R.G.3    Sheffield, L.J.4    Kincaid-Smith, P.5    Danks, D.M.6
  • 40
    • 2942676971 scopus 로고    scopus 로고
    • Metabolomics takes its place as latest up-and-coming "omic" science
    • Schmidt C. Metabolomics takes its place as latest up-and-coming "omic" science. J Natl Cancer Inst 96: 732-734, 2004.
    • (2004) J Natl Cancer Inst , vol.96 , pp. 732-734
    • Schmidt, C.1
  • 41
    • 36348979386 scopus 로고    scopus 로고
    • SetupX - A public study design database for metabolomic projects
    • Scholz M, Fiehn O. SetupX - a public study design database for metabolomic projects. Pacific Symp Biocomp 12: 169-180, 2007.
    • (2007) Pacific Symp Biocomp , vol.12 , pp. 169-180
    • Scholz, M.1    Fiehn, O.2
  • 42
    • 35748948350 scopus 로고    scopus 로고
    • Clinical proof-of-concept trial to assess the therapeutic effect of sirolimus in patients with autosomal dominant polycystic kidney disease: SUISSE ADPKD study
    • Serra AL, Kistler AD, Poster D, Struker M, Wuthrich RP, Weishaupt D, Tschirch F. Clinical proof-of-concept trial to assess the therapeutic effect of sirolimus in patients with autosomal dominant polycystic kidney disease: SUISSE ADPKD study. BMC Nephrol 8: 13, 2007.
    • (2007) BMC Nephrol , vol.8 , pp. 13
    • Serra, A.L.1    Kistler, A.D.2    Poster, D.3    Struker, M.4    Wuthrich, R.P.5    Weishaupt, D.6    Tschirch, F.7
  • 44
    • 33749235323 scopus 로고    scopus 로고
    • Development of polycystic kidney disease in juvenile cystic kidney mice: Insights into pathogenesis, ciliary abnormalities, and common features with human disease
    • Smith LA, Bukanov NO, Husson H, Russo RJ, Barry TC, Taylor AL, Beier DR, Ibraghimov-Beskrovnaya O. Development of polycystic kidney disease in juvenile cystic kidney mice: insights into pathogenesis, ciliary abnormalities, and common features with human disease. J Am Soc Nephrol 17: 2821-2831, 2006.
    • (2006) J Am Soc Nephrol , vol.17 , pp. 2821-2831
    • Smith, L.A.1    Bukanov, N.O.2    Husson, H.3    Russo, R.J.4    Barry, T.C.5    Taylor, A.L.6    Beier, D.R.7    Ibraghimov-Beskrovnaya, O.8
  • 47
    • 29144441200 scopus 로고    scopus 로고
    • A simple quantitative assay for urinary adenosine using column-switching high-performance liquid chromatography
    • Taniai H, Sumi S, Ito T, Ueta A, Ohkubo Y, Togari H. A simple quantitative assay for urinary adenosine using column-switching high-performance liquid chromatography. Tohoku J Exp Med 208: 57-63, 2006.
    • (2006) Tohoku J Exp Med , vol.208 , pp. 57-63
    • Taniai, H.1    Sumi, S.2    Ito, T.3    Ueta, A.4    Ohkubo, Y.5    Togari, H.6
  • 48
    • 23944479479 scopus 로고    scopus 로고
    • Earlier diagnosis of autosomal dominant polycystic kidney disease: Importance of family history and implications for cardiovascular and renal complications
    • Taylor M, Johnson AM, Tison M, Fain P, Schrier RW. Earlier diagnosis of autosomal dominant polycystic kidney disease: importance of family history and implications for cardiovascular and renal complications. Am J Kidney Dis 46: 415-423, 2005.
    • (2005) Am J Kidney Dis , vol.46 , pp. 415-423
    • Taylor, M.1    Johnson, A.M.2    Tison, M.3    Fain, P.4    Schrier, R.W.5
  • 49
    • 0031906203 scopus 로고    scopus 로고
    • New insights into polycystic kidney disease and its treatment
    • Torres VE. New insights into polycystic kidney disease and its treatment. Curr Opin Nephrol Hypertens 7: 159-169, 1998.
    • (1998) Curr Opin Nephrol Hypertens , vol.7 , pp. 159-169
    • Torres, V.E.1
  • 50
    • 33845989853 scopus 로고    scopus 로고
    • Polycystic kidney disease: Genes, proteins, animal models, disease mechanisms and therapeutic opportunities
    • Torres VE, Harris PC. Polycystic kidney disease: genes, proteins, animal models, disease mechanisms and therapeutic opportunities. J Intern Med 261: 17-31, 2007.
    • (2007) J Intern Med , vol.261 , pp. 17-31
    • Torres, V.E.1    Harris, P.C.2
  • 51
    • 24944499837 scopus 로고    scopus 로고
    • Nek8 mutation causes over-expression of galectin-1, sorcin, andvimentin and accumulation o fthe major urinary protein in renal cysts of jck mice
    • Valkova N, Yunis R, Mak SK, Kang K, Kultz D. Nek8 mutation causes over-expression of galectin-1, sorcin, andvimentin and accumulation o fthe major urinary protein in renal cysts of jck mice. Mol Cell Proteomics 4: 1009-1018, 2005.
    • (2005) Mol Cell Proteomics , vol.4 , pp. 1009-1018
    • Valkova, N.1    Yunis, R.2    Mak, S.K.3    Kang, K.4    Kultz, D.5
  • 54
    • 4644367485 scopus 로고    scopus 로고
    • Calcium restriction allows cAMP activation of the B-Raf/ ERK pathway, switching cells to a cAMP-dependent growth-stimulated phenotype
    • Yamaguchi T, Wallace DP, Magenheimer BS, Hempson SJ, Grantham JJ, Calvet JP. Calcium restriction allows cAMP activation of the B-Raf/ ERK pathway, switching cells to a cAMP-dependent growth-stimulated phenotype. J Biol Chem 279: 40419-40430, 2004.
    • (2004) J Biol Chem , vol.279 , pp. 40419-40430
    • Yamaguchi, T.1    Wallace, D.P.2    Magenheimer, B.S.3    Hempson, S.J.4    Grantham, J.J.5    Calvet, J.P.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.