Mismatched decoding in the brain

Journal of Neuroscience

Volumn 30, Issue 13, 2010, Pages 4815-4826

  Oizumi, Masafumi ^a   Ishii, Toshiyuki ^b   Ishibashi, Kazuya ^a   Hosoya, Toshihiko ^b   Okada, Masato ^a,b  

^a UNIVERSITY OF TOKYO   (Japan)

^b RIKEN BRAIN SCIENCE INSTITUTE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BRAIN; CONTROLLED STUDY; ENTROPY; INFORMATION PROCESSING; MATHEMATICAL MODEL; MISMATCHED DECODER; NERVE CELL; NONHUMAN; PRIORITY JOURNAL; PROBABILITY SAMPLE; RETINA;

ALGORITHMS; ANIMALS; BRAIN; INFORMATION THEORY; MODELS, NEUROLOGICAL; MODELS, STATISTICAL; PHOTIC STIMULATION; RETINAL GANGLION CELLS; URODELA; VISUAL PERCEPTION;

EID: 77950648337     PISSN: 02706474     EISSN: 15292401     Source Type: Journal    
DOI: 10.1523/JNEUROSCI.4360-09.2010     Document Type: Article

References (45)

1. Abbott LF, Dayan P (1999) The effect of correlated variability on the accuracy of a population code. Neural Comput 11: 91-101.
2. Amari S (2001) Information geometry on hierarchy of probability distributions. IEEE Trans Inform Theory 47: 1701-1711.
3. Amari S, Nakahara H (2006) Correlation and independence in the neural code. Neural Comput 18: 1259-1267.
4. Averbeck BB, Latham PE, Pouget A (2006) Neural correlations, population coding and computation. Nat Rev Neurosci 7: 358-366.
5. Berger A, Della Pietra S, Della Pietra C (1996) A maximum entropy approach to natural language processing. Comput Linguistics 22: 1-36. (Pubitemid 126420349)
6. Brody CD, Hopfield JJ (2003) Simple networks for spike-timing-based computation, with application to olfactory processing. Neuron 37: 843-852.
7. Cover TM, Thomas JA (1991) Elements of information theory. New York: Wiley.
8. Dan Y, Alonso JM, Usrey WM, Reid RC (1998) Coding of visual information by precisely correlated spikes in the lateral geniculate nucleus. Nat Neurosci 1: 501-507. (Pubitemid 128406061)
9. Golledge HD, Panzeri S, Zheng F, Pola G, Scannell JW, Giannikopoulos DV, Mason RJ, Tovée MJ, Young MP (2003) Correlations, feature-binding and population coding in primary visual cortex. Neuroreport 14: 1045-1050. (Pubitemid 36833249)
10. Gollisch T, MeisterM (2008) Rapid neural coding in the retina with relative spike latencies. Science 319: 1108-1111.
11. Gray CM, König P, Engel AK, SingerW (1989) Oscillatory responses in cat visual cortex exhibit inter-columnar synchronization which reflects global stimulus properties. Nature 338: 334-337. (Pubitemid 19082973)
12. Gutnisky DA, Dragoi V (2008) Adaptive coding of visual information in neural populations. Nature 452: 220-224. (Pubitemid 351380238)
13. Hopfield JJ (1999) Odor space and olfactory processing: collective algorithms and neural implementation. Proc Natl Acad Sci U S A 96: 12506-12511.
14. Ishikane H, Gangi M, Honda S, Tachibana M (2005) Synchronized retinal oscillations encode essential information for escape behavior in frogs. Nat Neurosci, 80: 1087-1095. (Pubitemid 41061520)
15. Jaynes ET (1957) Information theory and statistical mechanics. Phys Rev 106: 62-79.
16. Latham PE, Nirenberg S (2005) Synergy, redundancy, and independence in population codes, revisited. J Neurosci 25: 5195-5206.
17. Marre O, El Boustani S, Frégnac Y, Destexhe A (2009) Prediction of spatiotemporal patterns of neural activity from pairwise correlations. Phys Rev Lett 102: 138101.
18. Meister M (1996) Multineuronal codes in retinal signaling. Proc Natl Acad Sci U S A 93: 609-614.
19. Meister M, Pine J, BaylorDA (1994) Multi-neuronal signals from the retina: acquisition and analysis. J Neurosci Methods 51: 95-106.
20. Meister M, Lagnado L, Baylor DA (1995) Concerted signaling by retinal ganglion cells. Science 2700: 1207-1210.
21. Merhav N, Kaplan G, Lapidoth A, Shamai Shitz S (1994) On information rates for mismatched decoders. IEEE Trans Inform Theory 40: 1953-1967.
22. Montani F, Kohn A, Smith MA, Schultz SR (2007) The role of correlations in direction and contrast coding in the primary visual cortex. J Neurosci 27: 2338-2348. (Pubitemid 46340967)
23. Montani F, Ince RA, Senatore R, Arabzadeh E, Diamond ME, Panzeri S (2009) The impact of high-order interactions on the rate of synchronous discharge and information transmission in somatosensory cortex. Philos Transact A Math Phys Eng Sci 367: 3297-3310.
24. Montemurro MA, Senatore R, Panzeri S (2007) Tight data-robust bounds to mutual information combining shuffling and model selection techniques. Neural Comput 19: 2913-2957.
25. Nakahara H, Amari S (2002) Information-geometric measure for neural spikes. Neural Comput 14: 2269-2316.
26. Nirenberg S, Latham PE (2003) Decoding neural spike trains: how important are correlations? Proc Natl Acad Sci U S A 100: 7348-7353.
27. Nirenberg S, Carcieri SM, Jacobs AL, Latham PE (2001) Retinal ganglion cells act largely as independent encoders. Nature 411: 698-701. (Pubitemid 32531675)
28. Oizumi M, Ishii T, Ishibashi K, Hosoya T, OkadaM (2009) A general framework for investigating how far the decoding process in the brain can be simplified. Adv Neural Inform Process Syst 21: 1225-1232.
29. Panzeri S, Treves A (1996) Analytical estimates of limited sampling biases in different information measures. Network 7: 87-107.
30. Panzeri S, Petersen RS, Schultz SR, Lebedev M, Diamond ME (2001) The role of spike timing in the coding of stimulus location in rat somatosensory cortex. Neuron 29: 769-777. (Pubitemid 32323949)
31. Paradiso MA (1988) A theory for the use of visual orientation information which exploits the columnar structure of striate cortex. Biol Cybern 58: 35-49.
32. Perez-Orive J, Mazor O, Turner GC, Cassenaer S, Wilson RI, Laurent G (2002) Oscillations and sparsening of odor representations in the mushroom body. Science 297: 359-365. (Pubitemid 34790758)
33. Pillow JW, Paninski L, Uzzell VJ, Simoncelli EP, Chichilnisky EJ (2005) Prediction and decoding of retinal ganglion cell responses with a probabilistic spiking model. J Neurosci 250: 11003-11013. (Pubitemid 41692630)
34. Pillow JW, Shlens J, Paninski L, Sher A, Litke AM, Chichilnisky EJ, Simoncelli EP (2008) Spatio-temporal correlations and visual signalling in a complete neuronal population. Nature 4540: 995-999.
35. Pola G, Thiele A, Hoffmann KP, Panzeri S (2003) An exact method to quantify the information transmitted by different mechanisms of correlational coding. Network 14: 35-60. (Pubitemid 38010857)
36. Reich DS, Mechler F, Victor JD (2001) Temporal coding of contrast in primary visual cortex: when, what, and why. J Neurophysiol 85: 1039-1050. (Pubitemid 32209591)
37. Schneidman E, Still S, Berry MJ 2nd, BialekW (2003) Network information and connected correlations. Phys Rev Lett 91: 238701.
38. Schneidman E, Berry MJ 2nd, Segev R, BialekW (2006) Weak pairwise correlations imply strongly correlated network states in a neural population. Nature 440: 1007-1012.
39. Seung HS, SompolinskyH (1993) Simple models for reading neuronal population codes. Proc Natl Acad Sci U S A 90: 10749-10753. (Pubitemid 2007644)
40. Shannon CE (1948) A mathematical theory of communication. Bell System Tech J 27: 379-423, 623-656.
41. Shlens J, Field GD, Gauthier JL, Grivich MI, Petrusca D, Sher A, Litke AM, Chichilnisky EJ (2006) The structure of multi-neuron firing patterns in primate retina. J Neurosci 260: 8254-8266. (Pubitemid 44309839)
42. Stopfer M, Bhagavan S, Smith BH, Laurent G (1997) Impaired odour discrimination on desynchronization of odour-encoding neural assemblies. Nature 390: 70-74. (Pubitemid 27494757)
43. Tang A, Jackson D, Hobbs J, Chen W, Smith JL, Patel H, Prieto A, Petrusca D, Grivich MI, Sher A, Hottowy P, Dabrowski W, Litke AM, Beggs JM (2008) A maximum entropy model applied to spatial and temporal correlations from cortical networks in vitro. J Neurosci 28: 505-518.
44. van Hateren JH (1997) Processing of natural time series of intensities by the visual system of the blowfly. Vision Res 37: 3407-3416.
45. Wu S, Nakahara H, Amari S (2001) Population coding with correlation and an unfaithful model. Neural Comput 13: 775-797. (Pubitemid 33594304)