-
1
-
-
0030060689
-
Sequence-based identification of microbial pathogens: A reconsideration of Koch's postulates
-
Fredericks DN, Relman DA: Sequence-based identification of microbial pathogens: a reconsideration of Koch's postulates. Clin Microbiol Rev 1996;9:18-33.
-
(1996)
Clin Microbiol Rev
, vol.9
, pp. 18-33
-
-
Fredericks, D.N.1
Relman, D.A.2
-
2
-
-
43849099955
-
Microbiology in the post-genomic era
-
Medini D, Serruto D, Parkhill J, Relman DA, Donati C, et al: Microbiology in the post-genomic era. Nat Rev Microbiol 2008;6:419-430.
-
(2008)
Nat Rev Microbiol
, vol.6
, pp. 419-430
-
-
Medini, D.1
Serruto, D.2
Parkhill, J.3
Relman, D.A.4
Donati, C.5
-
3
-
-
0029653518
-
Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
-
Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, et al: Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 1995;269:496-512.
-
(1995)
Science
, vol.269
, pp. 496-512
-
-
Fleischmann, R.D.1
Adams, M.D.2
White, O.3
Clayton, R.A.4
Kirkness, E.F.5
-
4
-
-
0028829125
-
The minimal gene complement of Mycoplasma genitalium
-
Fraser CM, Gocayne JD, White O, Adams MD, Clayton RA, et al: The minimal gene complement of Mycoplasma genitalium. Science 1995;270:397-403.
-
(1995)
Science
, vol.270
, pp. 397-403
-
-
Fraser, C.M.1
Gocayne, J.D.2
White, O.3
Adams, M.D.4
Clayton, R.A.5
-
5
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, et al: Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 2004;428:37-43.
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
-
7
-
-
41649109613
-
Functional metagenomic profiling of nine biomes
-
Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, et al: Functional metagenomic profiling of nine biomes. Nature 2008;452:629-632.
-
(2008)
Nature
, vol.452
, pp. 629-632
-
-
Dinsdale, E.A.1
Edwards, R.A.2
Hall, D.3
Angly, F.4
Breitbart, M.5
-
8
-
-
77955914167
-
-
National Microbial Pathogen Data Resource [database on the Internet]. Version of March 24, Chicago: Computation Institute, University of Chicago/Argonne National Laboratory/Fellowship for Interpretation of Genomes; 2004- [cited 2008 May 10]. Available from:
-
National Microbial Pathogen Data Resource [database on the Internet]. Version of March 24, 2008. Chicago: Computation Institute, University of Chicago/Argonne National Laboratory/Fellowship for Interpretation of Genomes; 2004- [cited 2008 May 10]. Available from: http://www.nmpdr.org// FIG/seedviewer.cgi?pattern = 71421.1;page = SearchResult
-
(2008)
-
-
-
9
-
-
40549120596
-
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, et al: The RAST Server: rapid annotations using subsystems technology: BMC Genomics 2008;9:75-89.
-
(2008)
The RAST Server: Rapid Annotations Using Subsystems Technology: BMC Genomics
, vol.9
, pp. 75-89
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
Dejongh, M.4
Disz, T.5
-
10
-
-
36448974114
-
Principia aetiologica: Taking causality beyond Koch's postulates
-
Inglis TJ: Principia aetiologica: taking causality beyond Koch's postulates. J Med Microbiol 2007;56: 1419-1422.
-
(2007)
J Med Microbiol
, vol.56
, pp. 1419-1422
-
-
Inglis, T.J.1
-
11
-
-
0024041593
-
Molecular Koch's postulates applied to microbial pathogenicity
-
Falkow S: Molecular Koch's postulates applied to microbial pathogenicity. Rev Infect Dis 1988;10: S274-S276.
-
(1988)
Rev Infect Dis
, vol.10
-
-
Falkow, S.1
-
12
-
-
1842434337
-
Molecular Koch's postulates applied to bacterial pathogenicity-A personal recollection 15 years later
-
Falkow S: Molecular Koch's postulates applied to bacterial pathogenicity-a personal recollection 15 years later. Nat Rev Microbiol 2004;2:67-72.
-
(2004)
Nat Rev Microbiol
, vol.2
, pp. 67-72
-
-
Falkow, S.1
-
13
-
-
35349003200
-
Bacterial pathogenomics
-
Pallen MJ, Wren BW: Bacterial pathogenomics. Nature 2007;449:835-842.
-
(2007)
Nature
, vol.449
, pp. 835-842
-
-
Pallen, M.J.1
Wren, B.W.2
-
14
-
-
0029799009
-
The plasmin-binding protein Plr of group A streptococci is identified as glyceraldehyde- 3-phosphate dehydrogenase
-
Winram SB, Lottenberg R: The plasmin-binding protein Plr of group A streptococci is identified as glyceraldehyde- 3-phosphate dehydrogenase. Microbiology 1996;142:2311-2320.
-
(1996)
Microbiology
, vol.142
, pp. 2311-2320
-
-
Winram, S.B.1
Lottenberg, R.2
-
15
-
-
0029995819
-
Cloning, sequencing and functional overexpression of the Streptococcus equisimilis H46A gapC gene encoding a glyceraldehyde-3-phosphate dehydrogenase that also functions as a plasmin(ogen)-binding protein. Purification and biochemical characterization of the protein
-
Gase K, Gase A, Schirmer H, Malke H: Cloning, sequencing and functional overexpression of the Streptococcus equisimilis H46A gapC gene encoding a glyceraldehyde-3-phosphate dehydrogenase that also functions as a plasmin(ogen)-binding protein. Purification and biochemical characterization of the protein. Eur J Biochem 1996;239:42-51.
-
(1996)
Eur J Biochem
, vol.239
, pp. 42-51
-
-
Gase, K.1
Gase, A.2
Schirmer, H.3
Malke, H.4
-
16
-
-
77955864378
-
The genomics of disease-causing organisms: Mapping a strategy for discovery and defense
-
Buckley M: The genomics of disease-causing organisms: mapping a strategy for discovery and defense. American Academy of Microbiology 2004 (http:// academy.asm.org/index.php?option = com-content &task = blogcategory&id = 22&Itemid = 57).
-
(2004)
American Academy of Microbiology
-
-
Buckley, M.1
-
17
-
-
33748659861
-
Genes for the majority of group A streptococcal virulence factors and extracellular surface proteins do not confer an increased propensity to cause invasive disease
-
McMillan DJ, Beiko RG, Geffers R, Buer J, Schouls LM, et al: Genes for the majority of group A streptococcal virulence factors and extracellular surface proteins do not confer an increased propensity to cause invasive disease. Clin Infect Dis 2006;43:884-891.
-
(2006)
Clin Infect Dis
, vol.43
, pp. 884-891
-
-
McMillan, D.J.1
Beiko, R.G.2
Geffers, R.3
Buer, J.4
Schouls, L.M.5
-
18
-
-
34249009232
-
Strain prevalence, rather than innate virulence potential, is the major factor responsible for an increase in serious group A Streptococcus infections
-
Rogers S, Commons R, Danchin MH, Selvaraj G, Kelpie L, et al: Strain prevalence, rather than innate virulence potential, is the major factor responsible for an increase in serious group A Streptococcus infections. J Infect Dis 2007;195:1625-1633.
-
(2007)
J Infect Dis
, vol.195
, pp. 1625-1633
-
-
Rogers, S.1
Commons, R.2
Danchin, M.H.3
Selvaraj, G.4
Kelpie, L.5
-
19
-
-
0036908653
-
An immunogenetic and molecular basis for differences in outcomes of invasive group A streptococcal infections
-
Kotb M, Norrby-Teglund A, McGeer A, El-Sherbini H, Dorak MT, et al: An immunogenetic and molecular basis for differences in outcomes of invasive group A streptococcal infections. Nat Med 2002;8: 1398-1404.
-
(2002)
Nat Med
, vol.8
, pp. 1398-1404
-
-
Kotb, M.1
Norrby-Teglund, A.2
McGeer, A.3
El-Sherbini, H.4
Dorak, M.T.5
-
20
-
-
0035479288
-
Genetic control of susceptibility to group A streptococcal infection in mice
-
Medina E, Goldmann O, Rohde M, Lengeling A, Chhatwals GS: Genetic control of susceptibility to group A streptococcal infection in mice. J Infect Dis 2001;184:846-852.
-
(2001)
J Infect Dis
, vol.184
, pp. 846-852
-
-
Medina, E.1
Goldmann, O.2
Rohde, M.3
Lengeling, A.4
Chhatwals, G.S.5
-
21
-
-
25444501564
-
A new set of BXD recombinant inbred lines from advanced intercross populations in mice
-
Peirce JL, Lu L, Gu J, Silver LM, Williams RW: A new set of BXD recombinant inbred lines from advanced intercross populations in mice. BMC Genet 2004;5:7-23.
-
(2004)
BMC Genet
, vol.5
, pp. 7-23
-
-
Peirce, J.L.1
Lu, L.2
Gu, J.3
Silver, L.M.4
Williams, R.W.5
-
22
-
-
34547520746
-
Susceptibility to severe streptococcal sepsis: Use of a large set of isogenic mouse lines to study genetic and environmental factors
-
Aziz RK, Kansal R, Abdeltawab NF, Rowe SL, Su Y, et al: Susceptibility to severe streptococcal sepsis: use of a large set of isogenic mouse lines to study genetic and environmental factors. Genes Immun 2007;8:404-415.
-
(2007)
Genes Immun
, vol.8
, pp. 404-415
-
-
Aziz, R.K.1
Kansal, R.2
Abdeltawab, N.F.3
Rowe, S.L.4
Su, Y.5
-
23
-
-
43049085937
-
An unbiased systems genetics approach to mapping genetic loci modulating susceptibility to severe streptococcal sepsis
-
Abdeltawab NF, Aziz RK, Kansall R, Rowe SL, Su Y, et al: An unbiased systems genetics approach to mapping genetic loci modulating susceptibility to severe streptococcal sepsis. PLoS Pathogens 2008; 4:e1000042.
-
(2008)
PLoS Pathogens
, vol.4
-
-
Abdeltawab, N.F.1
Aziz, R.K.2
Kansall, R.3
Rowe, S.L.4
Su, Y.5
-
24
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, et al: The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res 2005;33: 5691-5702.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5691-5702
-
-
Overbeek, R.1
Begley, T.2
Butler, R.M.3
Choudhuri, J.V.4
Chuang, H.Y.5
-
25
-
-
34447271298
-
National Institute of Allergy and Infectious Diseases bioinformatics resource centers: New assets for pathogen informatics
-
Greene JM, Collins F, Lefkowitz EJ, Roos D, Scheuermann RH, et al: National Institute of Allergy and Infectious Diseases bioinformatics resource centers: new assets for pathogen informatics. Infect Immun 2007;75:3212-3219.
-
(2007)
Infect Immun
, vol.75
, pp. 3212-3219
-
-
Greene, J.M.1
Collins, F.2
Lefkowitz, E.J.3
Roos, D.4
Scheuermann, R.H.5
-
26
-
-
33846119130
-
The National Microbial Pathogen Database Resource (NMPDR): A genomics platform based on subsystem annotation
-
McNeil LK, Reich C, Aziz RK, Bartels D, Cohoon M, et al: The National Microbial Pathogen Database Resource (NMPDR): A genomics platform based on subsystem annotation. Nucleic Acids Res 2007;35: D347-D353.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
McNeil, L.K.1
Reich, C.2
Aziz, R.K.3
Bartels, D.4
Cohoon, M.5
-
27
-
-
38549144166
-
The Genomes OnLine Database (GOLD) in 2007 status of genomic and metagenomic projects and their associated metadata
-
Liolios K, Mavromatis K, Tavernarakis N, Kyrpides NC: The Genomes OnLine Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 2008;36:D475-D479.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Liolios, K.1
Mavromatis, K.2
Tavernarakis, N.3
Kyrpides, N.C.4
-
28
-
-
5044230561
-
Two-dimensional annotation of genomes
-
Palsson B: Two-dimensional annotation of genomes. Nat Biotechnol 2004;22:1218-1219.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 1218-1219
-
-
Palsson, B.1
-
29
-
-
34248632008
-
Toward the automated generation of genome-scale metabolic networks in the SEED
-
De Jongh M, Formsma K, Boillot P, Gould J, Rycenga M, Best A: Toward the automated generation of genome-scale metabolic networks in the SEED. BMC Bioinformatics 2007;8:139-155.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 139-155
-
-
De Jongh, M.1
Formsma, K.2
Boillot, P.3
Gould, J.4
Rycenga, M.5
Best, A.6
-
30
-
-
0037316342
-
FluxAnalyzer: Exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps
-
Klamt S, Stelling J, Ginkel M, Gilles ED: FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps. Bioinformatics 2003;19:261-269.
-
(2003)
Bioinformatics
, vol.19
, pp. 261-269
-
-
Klamt, S.1
Stelling, J.2
Ginkel, M.3
Gilles, E.D.4
-
31
-
-
33845985292
-
Discovery of a new prokaryotic type i GTP cyclohydrolase family
-
El Yacoubi B, Bonnett S, Anderson JN, Swairjo MA, Iwata-Reuyl D, de Crecy-Lagard V: Discovery of a new prokaryotic type I GTP cyclohydrolase family. J Biol Chem 2006;281:37586-37593.
-
(2006)
J Biol Chem
, vol.281
, pp. 37586-37593
-
-
El Yacoubi, B.1
Bonnett, S.2
Anderson, J.N.3
Swairjo, M.A.4
Iwata-Reuyl, D.5
De Crecy-Lagard, V.6
-
32
-
-
34548506752
-
Comparative genomics of bacterial and plant folate synthesis and salvage: Predictions and validations
-
de Crécy-Lagard V, El Yacoubi B, de la Garza RD, Noiriel A, Hanson AD: Comparative genomics of bacterial and plant folate synthesis and salvage: predictions and validations. BMC Genomics 2007;8: 245-249.
-
(2007)
BMC Genomics
, vol.8
, pp. 245-249
-
-
De Crécy-Lagard, V.1
El Yacoubi, B.2
De La Garza, R.D.3
Noiriel, A.4
Hanson, A.D.5
-
33
-
-
14044254160
-
A nudix enzyme removes pyrophosphate from dihydroneopterin triphosphate in the folate synthesis pathway of bacteria and plants
-
Klaus SM, Wegkamp A, Sybesma W, Hugenholtz J, Gregory JF 3rd, Hanson AD: A nudix enzyme removes pyrophosphate from dihydroneopterin triphosphate in the folate synthesis pathway of bacteria and plants. J Biol Chem 2005;280:5274-5280.
-
(2005)
J Biol Chem
, vol.280
, pp. 5274-5280
-
-
Klaus, S.M.1
Wegkamp, A.2
Sybesma, W.3
Hugenholtz, J.4
Gregory III, J.F.5
Hanson, A.D.6
-
34
-
-
34547657390
-
Structure and function of the E. coli dihydroneopterin triphosphate pyrophosphatase: A Nudix enzyme involved in folate biosynthesis
-
Gabelli SB, Bianchet MA, Xu W, Dunn CA, Niu ZD, et al: Structure and function of the E. coli dihydroneopterin triphosphate pyrophosphatase: a Nudix enzyme involved in folate biosynthesis. Structure 2007;15:1014-1022.
-
(2007)
Structure
, vol.15
, pp. 1014-1022
-
-
Gabelli, S.B.1
Bianchet, M.A.2
Xu, W.3
Dunn, C.A.4
Niu, Z.D.5
-
36
-
-
0037007095
-
Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks
-
Smoot JC, Barbian KD, Van Gompel JJ, Smoot LM, Chaussee MS, et al: Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks. Proc Natl Acad Sci USA 2002;99:4668-4673.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 4668-4673
-
-
Smoot, J.C.1
Barbian, K.D.2
Van Gompel, J.J.3
Smoot, L.M.4
Chaussee, M.S.5
-
37
-
-
3943087577
-
Progress toward characterization of the group A Streptococcus metagenome: Complete genome sequence of a macrolide-resistant serotype M6 strain
-
Banks DJ, Porcella SF, Barbian KD, Beres SB, Philips LE, et al: Progress toward characterization of the group A Streptococcus metagenome: complete genome sequence of a macrolide-resistant serotype M6 strain. J Infect Dis 2004;190:727-738.
-
(2004)
J Infect Dis
, vol.190
, pp. 727-738
-
-
Banks, D.J.1
Porcella, S.F.2
Barbian, K.D.3
Beres, S.B.4
Philips, L.E.5
-
38
-
-
23944510259
-
Genome sequence of a serotype M28 strain of group A Streptococcus: Potential new insights into puerperal sepsis and bacterial disease specificity
-
Green NM, Zhang S, Porcella SF, Nagiec MJ, Barbian KD, et al: Genome sequence of a serotype M28 strain of group A Streptococcus: potential new insights into puerperal sepsis and bacterial disease specificity. J Infect Dis 2005;192:760-770.
-
(2005)
J Infect Dis
, vol.192
, pp. 760-770
-
-
Green, N.M.1
Zhang, S.2
Porcella, S.F.3
Nagiec, M.J.4
Barbian, K.D.5
-
39
-
-
33646149163
-
Describing ancient horizontal gene transfers at the nucleotide and gene levels by comparative pathogenicity island genometrics
-
Collyn F, Guy L, Marceau M, Simonet M, Roten CA: Describing ancient horizontal gene transfers at the nucleotide and gene levels by comparative pathogenicity island genometrics. Bioinformatics 2006;22: 1072-1079.
-
(2006)
Bioinformatics
, vol.22
, pp. 1072-1079
-
-
Collyn, F.1
Guy, L.2
Marceau, M.3
Simonet, M.4
Roten, C.A.5
-
40
-
-
33846087685
-
Towards pathogenomics: A web-based resource for pathogenicity islands
-
Yoon SH, Park YK, Lee S, Choi D, Oh TK, et al: Towards pathogenomics: a web-based resource for pathogenicity islands. Nucleic Acids Res 2007;35: D395-D400.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Yoon, S.H.1
Park, Y.K.2
Lee, S.3
Choi, D.4
Oh, T.K.5
|