Gene cloning and characterization of a novel thermophilic esterase from Fervidobacterium nodosum Rt17-B1

Acta Biochimica et Biophysica Sinica

Volumn 42, Issue 4, 2010, Pages 288-295

  Yu, Shanshan ^a   Zheng, Baisong ^a   Zhao, Xinyu ^a   Feng, Yan ^a,b  

^a JILIN UNIVERSITY   (China)

^b Shanghai Jiao Tong University   (China)

Author keywords

Esterase; Fervidobacterium nodosum Rt17 B1; Phylogenetic analysis; Thermostability

Indexed keywords

ESTERASE; RECOMBINANT PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; ASPERGILLUS; BIOLOGY; CATALYSIS; CHEMISTRY; ENZYME SPECIFICITY; ENZYMOLOGY; ESCHERICHIA COLI; GENETICS; GRAM NEGATIVE ANAEROBIC BACTERIA; KINETICS; METABOLISM; METHODOLOGY; MOLECULAR CLONING; MOLECULAR GENETICS; MUTATION; SEQUENCE HOMOLOGY; SITE DIRECTED MUTAGENESIS;

AMINO ACID SEQUENCE; ASPERGILLUS; CATALYSIS; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; ESCHERICHIA COLI; ESTERASES; GRAM-NEGATIVE ANAEROBIC STRAIGHT, CURVED, AND HELICAL RODS; KINETICS; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; MUTATION; RECOMBINANT PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SUBSTRATE SPECIFICITY;

ASPERGILLUS; ASPERGILLUS ACULEATUS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; FERVIDOBACTERIUM NODOSUM;

EID: 77950580788     PISSN: 16729145     EISSN: 17457270     Source Type: Journal    
DOI: 10.1093/abbs/gmq020     Document Type: Article

References (34)

1. Jaeger KE, Dijkstra BW and Reetz MT. Bacterial biocatalysts: molecular biology, three-dimensional structures, and biotechnological applications of lipases. Annu Rev Microbiol 1999, 53: 315-351.
2. Bornemann S, Cassells JM, Dordick JS and Hacking AJ. The use of enzymes to regioselectively deacylate sucrose esters. Biocatalysis 1992, 7: 1-12.
3. Bornscheuer UT. Methods to increase enantioselectivity of lipases and esterases. Curr Opin Biotechnol 2002, 13: 543-547.
4. Chen YR, Usui S, Queener SW and Yu CA. Purification and properties of a p-nitrobenzyl esterase from Bacillus subtilis. J Ind Microbiol Biotechnol 1995, 15: 10-18.
5. Akoh CC, Lee CC, Liaw YC, Huang TH and Shaw JF. GDSL family of serine esterases/lipases. Prog Lipid Res 2004, 43: 534-552.
6. Upton C and Buckley JT. A new family of lipolytic enzymes. Trends Biochem Sci 1995, 20: 178-179.
7. Koshland DE. Application of a theory of enzyme specificity to protein synthesis (in Symposium on Amino Acid Activation). Proc Natl Acad Sci USA 1958, 44: 98-104.
8. Dalrymple BP, Cybinski DH, Layton I, McSweeney CS, Xue GP and Swadling YJ, et al. Three Neocallimastix patriciarum esterases associated with the degradation of complex polysaccharides are members of a new family of hydrolases. Microbiology 1997, 143: 2605-2614.
9. Li J, Derewenda U, Dauter Z, Smith S and Derewenda ZS. Crystal structure of the Escherichia coli thioesterase II, a homolog of the human Nef binding enzyme. Nat Struct Biol 2000, 7: 555-559.
10. Molgaard A, Kauppinen S and Larsen S. Rhamnogalacturonan acetylesterase elucidates the structure and function of a new family of hydrolases. Struct Fold Des 2000, 8: 373-383.
11. Lo YC, Lin SC, Shaw JF and Liaw YC. Crystal structure of the Escherichia coli thioesterase I/protease I/lysophospholipase L1: onsensus sequence blocks constitute the catalytic center of SGNH-hydrolases through a conserved hydrogen bond network. J Mol Biol 2003, 330: 539-551.
12. Cho H and Cronan JE, Jr. Escherichia coli thioesterase I, molecular cloning and sequencing of the structural gene and identification as a periplasmic enzyme. J Biol Chem 1993, 268: 9238-9245.
13. Tyukhtenko SI, Litvinchuk AV, Chang CF, Lo YC, Lee SJ and Shaw JF, et al. Sequential structural changes of Escherichia coli thioesterase/protease I in the serial formation of Michaelis and tetrahedral complexes with diethyl p-nitrophenyl phosphate. Biochemistry 2003, 42: 8289-8297.
14. Park YJ, Choi SY and Lee HB. A carboxylesterase from the thermoacidophilic archaeon Sulfolobus solfataricus P1; purification, characterization, and expression. Biochim Biophys Acta 2006, 1760: 820-828.
15. Rhee JK, Ahn DG, Kim YG and Oh JW. New thermophilic and thermostable esterase with sequence similarity to the hormone-sensitive lipase family, cloned from a metagenomic library. Appl Environ Microbiol 2005, 71: 817-825.
16. Matthias H, Moritz K and Garabed A. Extremely thermostable esterases from the thermoacidophilic euryarchaeon Picrophilus torridus. Extremophiles 2008, 12: 351-364.
17. Manco G, Giosue E, D'Auria S, Herman P, Carrea G and Rossi M. Cloning, overexpression, and properties of a new thermophilic and thermostable esterase with sequence similarity to hormone-sensitive lipase subfamily from the archaeon Archaeoglobus fulgidus. Arch Biochem Biophys 2000, 373: 182-192.
18. Kim SB, Lee Wand Ryu YW. Cloning and characterization of thermostable esterase from Archaeoglobus fulgidus. J Microbiol 2008, 46: 100-107.
19. Morana A, Prizito ND, Aurilia V, Rossi M and Cannio R. Acarboxylesterase from the hyperthermophilic archaeon Sulfolobus solfataricus: cloning of the gene, characterization of the protein. Gene 2002, 283: 107-115.
20. Hotta Y, Ezaki S, Atomi H and Imanaka T. Extremely stable and versatile carboxylesterase from a hyperthermophilic archaeon. Appl Environ Microbiol 2002, 68: 3925-3931.
21. Mandrich L, Menchise V, Alterio V, De-Simone G, Pedone C, Rossi M and Manco G. Functional and structural features of the oxyanion hole in a themophilic esterase from Alicyclobacillus acidocaldarius. Proteins 2007, 71: 1721-1731.
22. Sobek H and Gorisch H. Further kinetic and molecular characterization of an extremely heat-stable carboxylesterase from the thermoacidophilic archaebacterium Sulfolobus acidocaldarius. Biochem J 1989, 261: 993-998.
23. Ikeda M and Clark DS. Molecular cloning of extremely thermostable esterase gene from hyperthermophilic archaeon Pyrococcus furiosus in Escherichia coli. Biotechnol Bioeng 1998, 57: 624-629.
24. Huddleston S, Yallop CA and Charalambous BM. The identification and partial characterisation of a novel inducible extracellular thermostable esterase from the archaeon Sulfolobus shibatae. Biochem Biophys Res Commun 1995, 216: 495-500.
25. Patel BKC, Morgan HW and Daniel RM. Fervidobacterium nodosum gen. nov. and spec. nov., a new chemoorganotrophic, caldoactive, anaerobic bacterium. Arch Microbiol 1984, 141: 63-69.
26. Seddon AM, Curnow P and Booth PJ. Membrane proteins, lipids and detergents: not just a soap opera. Biochimica et Biophysica Acta 2004, 1666: 105-117.
27. Gao RJ, Feng Y, Ishikawa K, Ishida H, Ando S, Kosugi Y and Cao SG. Cloning, purification and properties of a hyperthermophilic esterase from archaeon Aeropyrumpernix K1. J Mol Catal B-Enzym 2003, 24/25: 1-8.
28. Bradford MM. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 1976, 72: 248-254.
29. Juház T, Szeltner Z and Polgá L. Properties of the prolyl oligopeptidase homologue from Pyrococcus furiosus. FEBS Lett 2006, 580: 3493-3497.
30. Bates PA, Kelley LA, MacCallum RM and Sternberg MJ. Enhancement of protein modeling by human intervention in applying the automatic programs 3DJIGSAW and 3D-PSSM. Proteins 2001, 45: 39-46.
31. Kelley LA and Sternberg MJE. Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc 2009, 4: 363-371.
32. Luthy R, Bowie JU and Eisenberg D. Assessment of protein models with three-dimensional profiles. Nature 1992, 356: 83-85.
33. Riedel K, Talker-Huiber D, Givskov M, Schwab H and Eberl L. Identification and characterization of a GDSL esterase gene located proximal to the swr quorum-sensing system of Serratia liquefaciens MG1. Appl Environ Microbiol 2003, 69: 3901-3910.
34. Ling H. Sequence analysis of GDSL lipase gene family in Arabidopsis thaliana, Pak J Biol Sci 2008, 11: 763-767.