Protein crystallography reveals a role for the FS0 cluster of Escherichia coli nitrate reductase a (NarGHI) in enzyme maturation

Journal of Biological Chemistry

Volumn 285, Issue 12, 2010, Pages 8801-8807

  Rothery, Richard A ^a   Bertero, Michela G ^b   Spreter, Thomas ^b   Bouromand, Nasim ^a   Strynadka, Natalie C J ^b   Weiner, Joel H ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

^b UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ARG RESIDUES; CATALYTIC ACTIVITY; CATALYTIC SUBUNITS; COFACTORS; CONCOMITANT DECREASE; CRITICAL SEGMENTS; DINUCLEOTIDES; ELECTRON TRANSFER; EPR SPECTROSCOPY; NITRATE REDUCTASE A; POTENTIOMETRY; PROSTHETIC GROUPS; PROTEIN CRYSTALLOGRAPHY; SITE DIRECTED MUTAGENESIS; WILD TYPES;

CRYSTALLOGRAPHY; ELECTRON RESONANCE; ELECTRON SPIN RESONANCE SPECTROSCOPY; ENZYMES; ESCHERICHIA COLI; MINERALOGY; MOLYBDENUM; PARAMAGNETIC RESONANCE; QUANTUM THEORY;

ENZYME ACTIVITY;

BACTERIAL ENZYME; GUANINE NUCLEOTIDE; MOLYBDOBIS(PYRANOPTERIN GUANINE DINUCLEOTIDE); NITRATE REDUCTASE; UNCLASSIFIED DRUG; CYSTEINE; IRON SULFUR PROTEIN; MOLYBDENUM; OXYGEN; SERINE;

ARTICLE; CONTROLLED STUDY; CRYSTALLOGRAPHY; ELECTRON SPIN RESONANCE; ELECTRON TRANSPORT; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME METABOLISM; ENZYME STRUCTURE; ESCHERICHIA COLI; NONHUMAN; OXIDATION REDUCTION POTENTIAL; PRIORITY JOURNAL; PROTEIN ASSEMBLY; SITE DIRECTED MUTAGENESIS; STRUCTURE ACTIVITY RELATION; WILD TYPE; CATALYSIS; CELL MEMBRANE; CHEMISTRY; ENZYMOLOGY; METABOLISM; METHODOLOGY; MUTATION; X RAY CRYSTALLOGRAPHY;

ESCHERICHIA COLI;

CATALYSIS; CELL MEMBRANE; CRYSTALLOGRAPHY, X-RAY; CYSTEINE; ELECTRON SPIN RESONANCE SPECTROSCOPY; ELECTRON TRANSPORT; ESCHERICHIA COLI; IRON-SULFUR PROTEINS; MOLYBDENUM; MUTAGENESIS, SITE-DIRECTED; MUTATION; NITRATE REDUCTASES; OXYGEN; SERINE;

EID: 77950570076     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.066027     Document Type: Article

References (66)

1. Blasco, F., Guigliarelli, B., Magalon, A., Asso, M., Giordano, G., and Rothery, R. A. (2001) Cell. Mol. Life Sci. 58, 179-193
2. Bertero, M. G., Rothery, R. A., Palak, M., Hou, C., Lim, D., Blasco, F., Weiner, J. H., and Strynadka, N. C. (2003) Nat. Struct. Biol. 10, 681-687
3. Jormakka, M., Richardson, D., Byrne, B., and Iwata, S. (2004) Structure 12, 95-104
4. Rothery, R. A., Workun, G. J., and Weiner, J. H. (2008) Biochim. Biophys. Acta 1778, 1897-1929
5. Jormakka, M., Törnroth, S., Byrne, B., and Iwata, S. (2002) Science 295, 1863-1868
6. Weiner, J. H., Rothery, R. A., Sambasivarao, D., and Trieber, C. A. (1992) Biochim. Biophys. Acta 1102, 1-18
7. Krafft, T., Bokranz, M., Klimmeck, O., Schröder, I., Fahrenholz, F., Kojro, E., and Kröger, A. (1992) Eur. J. Biochem. 206, 503-510
8. Jormakka, M., Yokoyama, K., Yano, T., Tamakoshi, M., Akimoto, S., Shimamura, T., Curmi, P., and Iwata, S. (2008) Nat. Struct. Mol. Biol. 15, 730-737
9. Heinzinger, N. K., Fujimoto, S. Y., Clark, M. A., Moreno, M. S., and Barrett, E. L. (1995) J. Bacteriol. 177, 2813-2820
10. Hinsley, A. P., and Berks, B. C. (2002) Microbiology 148, 3631-3638
11. Hille, R. (1996) Chem. Rev. 96, 2757-2816
12. Hille, R. (2002) Met. Ions Biol. Syst. 39, 187-226
13. Moura, J. J., Brondino, C. D., Trincão, J., and Romão, M. J. (2004) J. Biol. Inorg. Chem. 9, 791-799
14. Kloer, D. P., Hagel, C., Heider, J., and Schulz, G. E. (2006) Structure 14, 1377-1388
15. Hilton, J. C., and Rajagopalan, K. V. (1996) Arch. Biochem. Biophys. 325, 139-143
16. Johnson, J. L., and Rajagopalan, K. V. (1982) Proc. Natl. Acad. U.S.A. 79, 6856-6860
17. Johnson, J. L., Bastian, N. R., and Rajagopalan, K. V. (1990) Proc. Natl. Acad. Sci. U.S.A. 87, 3190-3194
18. Rothery, R. A., Bertero, M. G., Cammack, R., Palak, M., Blasco, F., Strynadka, N. C., and Weiner, J. H. (2004) Biochemistry 43, 5324-5333
19. Magalon, A., Asso, M., Guigliarelli, B., Rothery, R. A., Bertrand, P., Giordano, G., and Blasco, F. (1998) Biochemistry 37, 7363-7370
20. Trieber, C. A., Rothery, R. A., and Weiner, J. H. (1996) J. Biol. Chem. 271, 4620-4626
21. Gladyshev, V. N., Boyington, J. C., Khangulov, S. V., Grahame, D. A., Stadtman, T. C., and Sun, P. D. (1996) J. Biol. Chem. 271, 8095-8100
22. González, P. J., Rivas, M. G., Brondino, C. D., Bursakov, S. A., Moura, I., and Moura, J. J. (2006) J. Biol. Inorg. Chem. 11, 609-616
23. Jepson, B. J., Mohan, S., Clarke, T. A., Gates, A. J., Cole, J. A., Butler, C. S., Butt, J. N., Hemmings, A. M., and Richardson, D. J. (2007) J. Biol. Chem. 282, 6425-6437
24. Palmer, T., Santini, C. L., Iobbi-Nivol, C., Eaves, D. J., Boxer, D. H., and Giordano, G. (1996) Mol. Microbiol. 20, 875-884
25. Blasco, F., Pommier, J., Augier, V., Chippaux, M., and Giordano, G. (1992) Mol. Microbiol. 6, 221-230
26. Blasco, F., Iobbi, C., Giordano, G., Chippaux, M., and Bonnefoy, V. (1989) Mol. Gen. Genet. 218, 249-256
27. Blasco, F., Dos Santos, J. P., Magalon, A., Frixon, C., Guigliarelli, B., Santini, C. L., and Giordano, G. (1998) Mol. Microbiol. 28, 435-447
28. Lanciano, P., Vergnes, A., Grimaldi, S., Guigliarelli, B., and Magalon, A. (2007) J. Biol. Chem. 282, 17468-17474
29. Turner, R. J., Papish, A. L., and Sargent, F. (2004) Can. J. Microbiol. 50, 225-238
30. Li, H., and Turner, R. J. (2009) Can. J. Microbiol. 55, 179-188
31. Weiner, J. H., Bilous, P. T., Shaw, G. M., Lubitz, S. P., Frost, L., Thomas, G. H., Cole, J. A., and Turner, R. J. (1998) Cell 93, 93-101
32. Berks, B. C., Sargent, F., and Palmer, T. (2000) Mol. Microbiol. 35, 260-274
33. Berks, B. C. (1996) Mol. Microbiol. 22, 393-404
34. Ize, B., Coulthurst, S. J., Hatzixanthis, K., Caldelari, I., Buchanan, G., Barclay, E. C., Richardson, D. J., Palmer, T., and Sargent, F. (2009) Microbiology 155, 3992-4004
35. Pascal, M. C., Burini, J. F., Ratouchniak, J., and Chippaux, M. (1982) Mol. Gen. Genet. 188, 103-106
36. Guigliarelli, B., Magalon, A., Asso, M., Bertrand, P., Frixon, C., Giordano, G., and Blasco, F. (1996) Biochemistry 35, 4828-4836
37. Rothery, R. A., and Weiner, J. H. (1991) Biochemistry 30, 8296-8305
38. Rothery, R. A., Blasco, F., Magalon, A., Asso, M., and Weiner, J. H. (1999) Biochemistry 38, 12747-12757
39. Bertero, M. G., Rothery, R. A., Boroumand, N., Palak, M., Blasco, F., Ginet, N., Weiner, J. H., and Strynadka, N. C. (2005) J. Biol. Chem. 280, 14836-14843
40. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
41. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
42. McRee, D. E. (1999) J. Struct. Biol. 125, 156-165
43. Rothery, R. A., Blasco, F., and Weiner, J. H. (2001) Biochemistry 40, 5260-5268
44. Lowry, O. H., Rosebrough, N. J., Farr, A. L., and Randall, R. J. (1951) J. Biol. Chem. 193, 265-275
45. Markwell, M. A., Haas, S. M., Bieber, L. L., and Tolbert, N. E. (1978) Anal. Biochem. 87, 206-210
46. Rothery, R. A., Chatterjee, I., Kiema, G., McDermott, M. T., and Weiner, J. H. (1998) Biochem. J. 332, 35-41
47. Sambasivarao, D., Turner, R. J., Simala-Grant, J. L., Shaw, G., Hu, J., and Weiner, J. H. (2000) J. Biol. Chem. 275, 22526-22531
48. Morpeth, F. F., and Boxer, D. H. (1985) Biochemistry 24, 40-46
49. Buc, J., Santini, C. L., Blasco, F., Giordani, R., Cárdenas, M. L., Chippaux, M., Cornish-Bowden, A., and Giordano, G. (1995) Eur. J. Biochem. 234, 766-772
50. Trieber, C. A., Rothery, R. A., and Weiner, J. H. (1994) J. Biol. Chem. 269, 7103-7109
51. Bennett, B. D., Kimball, E. H., Gao, M., Osterhout, R., Van Dien, S. J., and Rabinowitz, J. D. (2009) Nat. Chem. Biol. 5, 593-599
52. Vergnes, A., Gouffi-Belhabich, K., Blasco, F., Giordano, G., and Magalon, A. (2004) J. Biol. Chem. 279, 41398-41403
53. Hettmann, T., Siddiqui, R. A., von Langen, J., Frey, C., Romão, M. J., and Diekmann, S. (2003) Biochem. Biophys. Res. Commun. 310, 40-47
54. Daizadeh, I., Medvedev, D. M., and Stuchebrukhov, A. A. (2002) Mol. Biol. Evol. 19, 406-415
55. Wittekindt, C., Schwarz, M., Friedrich, T., and Koslowski, T. (2009) J. Am. Chem. Soc. 131, 8134-8140
56. Moser, C. C., Chobot, S. E., Page, C. C., and Dutton, P. L. (2008) Biochim. Biophys. Acta 1777, 1032-1037
57. Hagen, W. R. (1992) Adv. Inorg. Chem. 38, 165-222
58. Duderstadt, R. E., Brereton, P. S., Adams, M. W., and Johnson, M. K. (1999) FEBS Lett. 454, 21-26
59. Lanciano, P., Savoyant, A., Grimaldi, S., Magalon, A., Guigliarelli, B., and Bertrand, P. (2007) J. Phys. Chem. B 111, 13632-13637
60. Cheng, V. W., Ma, E., Zhao, Z., Rothery, R. A., and Weiner, J. H. (2006) J. Biol. Chem. 281, 27662-27668
61. Rothery, R. A., Magalon, A., Giordano, G., Guigliarelli, B., Blasco, F., and Weiner, J. H. (1998) J. Biol. Chem. 273, 7462-7469
62. Chan, C. S., Howell, J. M., Workentine, M. L., and Turner, R. J. (2006) Biochem. Biophys. Res. Commun. 343, 244-251
63. Watts, C. A., Ridley, H., Dridge, E. J., Leaver, J. T., Reilly, A. J., Richardson, D. J., and Butler, C. S. (2005) Biochem. Soc. Trans. 33, 173-175
64. Sargent, F. (2007) Microbiology 153, 633-651
65. Temple, C. A., and Rajagopalan, K. V. (2000) J. Biol. Chem. 275, 40202-40210
66. Neumann, M., Mittelstädt, G., Seduk, F., Iobbi-Nivol, C., and Leimkühler, S. (2009) J. Biol. Chem. 284, 21891-21898