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Volumn , Issue , 2009, Pages 716-721

Fusion of conditional random field and signalp for protein cleavage site prediction

Author keywords

Cleavage sites; Conditional random fields; Discriminative models; Protein sequences; Signal peptides

Indexed keywords

CLEAVAGE SITES; CONDITIONAL RANDOM FIELD; DISCRIMINATIVE MODELS; PROTEIN SEQUENCES; SIGNAL PEPTIDE;

EID: 77950555852     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (4)

References (18)
  • 1
    • 0024963567 scopus 로고
    • Signal sequences
    • L. M. Gierasch, "Signal sequences," Biochemistry, vol.28, pp. 923-930, 1989.
    • (1989) Biochemistry , vol.28 , pp. 923-930
    • Gierasch, L.M.1
  • 2
    • 0023046815 scopus 로고
    • A new method for predicting signal sequence cleavage sites
    • G. von Heijne, "A new method for predicting signal sequence cleavage sites," Nucleic Acids Research, vol.14, no.11, pp. 4683-4690, 1986.
    • (1986) Nucleic Acids Research , vol.14 , Issue.11 , pp. 4683-4690
    • Von Heijne, G.1
  • 3
    • 3242878999 scopus 로고    scopus 로고
    • PrediSi: Prediction of signal peptides and their cleavage positions
    • K. Hiller, A. Grote, M. Scheer, R. Munch, and D. Jahn, "PrediSi: Prediction of signal peptides and their cleavage positions," Nucleic Acids Research, vol.32, pp. 375-379, 2004.
    • (2004) Nucleic Acids Research , vol.32 , pp. 375-379
    • Hiller, K.1    Grote, A.2    Scheer, M.3    Munch, R.4    Jahn, D.5
  • 4
    • 0031240609 scopus 로고    scopus 로고
    • A neural network method for identification of prokaryotic and eukaryotic signal perptides and prediction of their cleavage sites
    • H. Nielsen, J. Engelbrecht, S. Brunak, and G. von Heijne, "A neural network method for identification of prokaryotic and eukaryotic signal perptides and prediction of their cleavage sites," Int. J. Neural Sys., vol.8, pp. 581-599, 1997.
    • (1997) Int. J. Neural Sys. , vol.8 , pp. 581-599
    • Nielsen, H.1    Engelbrecht, J.2    Brunak, S.3    Von Heijne, G.4
  • 5
    • 84856990137 scopus 로고    scopus 로고
    • BLOMAP: An encoding of amino acids which improves signal peptide cleavage site prediction
    • Y. P. Phoebe Chen and L. Wong, Eds., Singapore, 17-21 Jan
    • S. R. Maetschke, M. Towsey, and M. B. Boden, "BLOMAP: An encoding of amino acids which improves signal peptide cleavage site prediction," in 3rd Asia Pacific Bioinformatics Conference, Y. P. Phoebe Chen and L. Wong, Eds., Singapore, 17-21 Jan 2005, pp. 141-150.
    • (2005) 3rd Asia Pacific Bioinformatics Conference , pp. 141-150
    • Maetschke, S.R.1    Towsey, M.2    Boden, M.B.3
  • 6
    • 0031603460 scopus 로고    scopus 로고
    • Prediction of signal peptides and signal anchors by a hidden Markov model
    • J. Glasgow et al., Ed., AAAI Press
    • H. Nielsen and A. Krogh, "Prediction of signal peptides and signal anchors by a hidden Markov model," in Proc. Sixth Int. Conf. on Intelligent Systems for Molecular Biology, J. Glasgow et al., Ed. 1998, pp. 122-130, AAAI Press.
    • (1998) Proc. Sixth Int. Conf. on Intelligent Systems for Molecular Biology , pp. 122-130
    • Nielsen, H.1    Krogh, A.2
  • 7
    • 3042521098 scopus 로고    scopus 로고
    • Improved prediction of signal peptides: SignalP 3.0
    • DOI 10.1016/j.jmb.2004.05.028, PII S0022283604005972
    • J. D. Bendtsen, H. Nielsen, G. von Heijne, and S. Brunak, "Improved prediction of signal peptides: Signalp 3.0," J. Mol. Biol., vol.340, pp. 783-795, 2004. (Pubitemid 38829638)
    • (2004) Journal of Molecular Biology , vol.340 , Issue.4 , pp. 783-795
    • Bendtsen, J.D.1    Nielsen, H.2    Von Heijne, G.3    Brunak, S.4
  • 8
    • 70349211737 scopus 로고    scopus 로고
    • Conditional random fields for the prediction of signal peptide cleavage sites
    • Taipei, April
    • M. W. Mak and S. Y. Kung, "Conditional random fields for the prediction of signal peptide cleavage sites," in Proc. ICASSP, Taipei, April 2009.
    • (2009) Proc. ICASSP
    • Mak, M.W.1    Kung, S.Y.2
  • 10
    • 0032554318 scopus 로고    scopus 로고
    • Correlations in protein sequences and property codes
    • DOI 10.1006/jtbi.1997.0560
    • O. Weiss and H. Herzel, "Correlations in protein sequences and property codes," J. theor. Biol, vol.190, pp. 341-353, 1998. (Pubitemid 28159752)
    • (1998) Journal of Theoretical Biology , vol.190 , Issue.4 , pp. 341-353
    • Weiss, O.1    Herzel, H.2
  • 11
    • 36248941599 scopus 로고    scopus 로고
    • A study of residue correlation within protein sequences and its application to sequence classification
    • C. Hemmerich and S. Kim, "A study of residue correlation within protein sequences and its application to sequence classification," EURASIP J. Bioinformatics Syst. Biol., vol.2007, no.1, pp. 9-9, 2007.
    • (2007) EURASIP J. Bioinformatics Syst. Biol. , vol.2007 , Issue.1 , pp. 9-9
    • Hemmerich, C.1    Kim, S.2
  • 12
    • 59549087165 scopus 로고    scopus 로고
    • On discriminative vs. generative classifiers: A comparison of logistic regression and naive bayes
    • Cambridge, MA, MIT Press
    • A. Y. Ng and M. I. Jordan, "On discriminative vs. generative classifiers: A comparison of logistic regression and naive bayes," in Advances in Neural Information Processing 14, Cambridge, MA, 2002, MIT Press.
    • (2002) Advances in Neural Information Processing , vol.14
    • Ng, A.Y.1    Jordan, M.I.2
  • 13
    • 27544451563 scopus 로고    scopus 로고
    • RNA secondary structural alignment with conditional random fields
    • K. Sato and Y. Sakakibara, "RNA secondary structural alignment with conditional random fields," Bioinformatics, vol.21, pp. 237-242, 2005.
    • (2005) Bioinformatics , vol.21 , pp. 237-242
    • Sato, K.1    Sakakibara, Y.2
  • 15
    • 0008608908 scopus 로고    scopus 로고
    • Alphabet indexing for approximating features of symbols
    • PII S0304397598000887
    • S. Shimozono, "Alphabet indexing for approximating features of symbols," Theor. Comput. Sci., vol.210, no.2, pp. 245-260, 1999. (Pubitemid 129611353)
    • (1999) Theoretical Computer Science , vol.210 , Issue.2 , pp. 245-260
    • Shimozono, S.1
  • 16
    • 0020770479 scopus 로고
    • Patterns of amino acids near signalsequence cleavage sites
    • Jun.
    • G. von Heijne, "Patterns of amino acids near signalsequence cleavage sites," Eur J Biochem., vol.133, no.1, pp. 17-21, Jun 1983.
    • (1983) Eur J Biochem. , vol.133 , Issue.1 , pp. 17-21
    • Von Heijne, G.1
  • 18
    • 0033738137 scopus 로고    scopus 로고
    • A comparison of signal sequence prediction methods using a test set of signal peptides
    • K. M. L. Menne, H. Hermjakob, and R. Apweiler, "A comparison of signal sequence prediction methods using a test set of signal peptides," Bioinformatics, vol.16, pp. 741-742, 2000.
    • (2000) Bioinformatics , vol.16 , pp. 741-742
    • Menne, K.M.L.1    Hermjakob, H.2    Apweiler, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.