Cloning of the papaya chromoplast-specific lycopene β-cyclase, CpCYC-b, controlling fruit flesh color reveals conserved microsynteny and a recombination hot spot

Plant Physiology

Volumn 152, Issue 4, 2010, Pages 2013-2022

  Blas, Andrea L ^a,d,f   Ming, Ray ^a,b   Liu, Zhiyong ^a,c   Veatch, Olivia J ^a,d,g   Paull, Robert E ^d   Moore, Paul H ^a   Yu, Qingyi ^a,e  

^a HAWAII AGRICULTURE RESEARCH CENTER   (United States)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^c CHINA AGRICULTURAL UNIVERSITY   (China)

^d UNIVERSITY OF HAWAII   (United States)

^e TEXAS A AND M UNIVERSITY   (United States)

^f IRTA   (Spain)

^g VANDERBILT UNIVERSITY MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; BACTERIA (MICROORGANISMS); CARICA PAPAYA; LYCOPERSICON ESCULENTUM; SOLANUM; VITACEAE; VITIS VINIFERA;

EID: 77950524829     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.109.152298     Document Type: Article

References (42)

1. Ball EV, Stenson PD, Abeysinghe SS, Krawczak M, Cooper DN, Chuzhanova NA (2005) Microdeletions and microinsertions causing human genetic disease: common mechanisms of mutagenesis and the role of local DNA sequence complexity. Hum Mutat 26: 205-213
2. Blas AL, Yu Q, Chen C, Veatch O, Moore PH, Paull RE, Ming R (2009) Enrichment of a papaya high-density genetic map with AFLP markers. Genome 52: 716-725
3. Bouvier F, Hugueney P, d'Harlingue A, Kuntz M, Camara B (1994) Xanthophyll biosynthesis in chromoplasts: isolation and molecular cloning of an enzyme catalyzing the conversion of 5,6-epoxycarotenoid into ketocarotenoid. Plant J 6: 45-54
4. Bowers JE, Chapman BA, Rong J, Paterson AH (2003) Unraveling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events. Nature 422: 433-438
5. Bramley PM (2002) Regulation of carotenoid formation during tomato fruit ripening and development. J Exp Bot 53: 2107-2113
6. Byers PH (2002) Killing the messenger: new insights into non-sense mediated mRNA decay. J Clin Invest 109: 3-6
7. Chen C, Yu Q, Hou S, Li Y, Eustice M, Skelton RL, Veatch O, Herdes RE, Diebold L, Saw J, et al (2007) Construction of a sequence-tagged high-density genetic map of papaya for comparative structural and evolutionary genomics in Brassicales. Genetics 177: 2481-2491
8. Chung CT, Niemela SL, Miller RH (1989) One-step preparation of competent Escherichia coli: transformation and storage of bacterial cells in the same solution. Proc Natl Acad Sci USA 86: 2172-2175
9. Cunningham FX, Gantt E (1998) Genes and enzymes of carotenoid biosynthesis in plants. Annu Rev Plant Physiol Plant Mol Biol 49: 557-583
10. Cunningham FX, Gantt E (2007) A portfolio of plasmids for identification and analysis of carotenoid pathway enzymes: Adonis aestivalis as a case study. Photosynth Res 92: 245-259
11. De Iorio M, de Silva E, Stumpf MPH (2005) Recombination hotspots as a point process. Philos Trans R Soc Lond B Biol Sci 360: 1597-1603
12. DellaPenna D, Pogson BJ (2006) Vitamin synthesis in plants: tocopherols and carotenoids. Annu Rev Plant Biol 57: 711-738
13. Felsenstein J (2005) PHYLIP (Phylogeny Inference Package) Version 3.6. http://evolution.genetics.washington.edu/phylip.html (March 4, 2010)
14. Freeling M, Lyon E, Pedersen B, Alam M, Ming R, Lisch D (2008) Many or most genes in Arabidopsis transposed after the origin of the order Brassicales. Genome Res 18: 1924-1937
15. Ha SW, Kim JB, Park JS, Lee SW, Cho KJ (2007) A comparison of the carotenoid accumulation in Capsicum varieties that show different ripening colours: deletion of the capsanthin-capsorubin synthase gene is not a prerequisite for the formation of a yellow pepper. J Exp Bot 58: 3135-3144
16. Hamilton RA, Ito PJ, Paull RE (1993) 'Sunset' Solo Papaya. Hawaii Cooperative Extension Service, University of Hawaii, Honolulu
17. Hey J (2004) What's so hot about recombination hotspots? PLoS Biol 2: e190
18. Hirschberg J (2001) Carotenoid biosynthesis in flowering plants. Curr Opin Plant Biol 4: 210-218
19. Hugueney P, Badillo A, Chen HC, Klein A, Hirschberg J, Camara B, Kuntz M (1995) Metabolism of cyclic carotenoids: a model for the alteration of this biosynthetic pathway in Capsicum annuum chromoplasts. Plant J 8: 417-424
20. Karthikeyan G, Chary KVR, Rao BJ (1999) Fold-back structures at the distal end influence DNA slippage at the proximal end during mono-nucleotide repeat expansions. Nucleic Acids Res 27: 3851-3858
21. Kim MS, Moore PH, Zee F, Fitch MMM, Steiger DL, Manshardt RM, Paull RE, Drew RA, Sekioka T, Ming R (2002) Genetic diversity of the Carica papaya as revealed by AFLP markers. Genome 45: 503-512
22. Kuo HF, Olsen KM, Richards EJ (2006) Natural variation in a subtelomeric region of Arabidopsis: implications for the genomic dynamics of a chromosome end. Genetics 173: 401-417
23. Li J, Hsia AP, Schnable PS (2007) Recent advances in plant recombination. Curr Opin Plant Biol 10: 131-135
24. Li L, Paolillo DJ, Parthasarathy MV, DiMuzio EM, Garvin DF (2001) A novel gene mutation that confers abnormal patterns of b-carotene accumulation in cauliflower (Brassica oleracea var. botrytis). Plant J 26: 59-67
25. Lu S, Van Eck J, Zhou X, Lopez AB, O'Halloran DM, Cosman KM, Conlin BJ, Paolillo DJ, Garvin DF, Vrebalov J, et al (2006) The cauliflower Or gene encodes a DnaJ cysteine-rich domain-containing protein that mediates high-levels of B-carotene accumulation. Plant Cell 18: 3594-3605
26. Lyons E, Pedersen B, Kane J, Freeling M (2008) The value of nonmodel genomes and an example using SynMap within CoGe to dissect the hexaploidy that predates the Rosids. Trop Plant Biol 1: 181-190
27. Ma H, Moore PH, Liu Z, Kim MS, Yu Q, Fitch MMM, Sekioka T, Paterson AH, Ming R (2004) High-density linkage mapping revealed suppression of recombination at the sex determination locus in papaya. Genetics 166: 419-436
28. Mézard C (2006) Meiotic recombination hotspots in plants. Biochem Soc Trans 34: 531-534
29. Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, et al (2008) The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 452: 991-996
30. Morton J (1987) Papaya. In J Morton, ed, Fruits of Warm Climates. Julia F. Morton, Miami, pp 336-346
31. Nagarajan N, Navajas-Pérez R, Pop M, Alam M, Ming R, Paterson AH, Salzberg SL (2008) Genome-wide analysis of repetitive elements in papaya. Trop Plant Biol 1: 191-201
32. Paull RE, Irikura B, Wu P, Turano H, Chen NJ, Blas A, Fellman JK, Gschwend AR, Wai CM, Yu Q, et al (2008) Fruit development, ripening and quality related genes in the papaya genome. Trop Plant Biol 1: 246-277
33. Rodriguez-Amaya DB (2003) Enhancing the Carotenoid Levels of Food through Agriculture and Food Technology. FoodAfrica. http://foodafrica.nri.org/nutrition/internetpapers/DeliaBRodriguez.pdf (March 4, 2010)
34. Ronen G, Carmel-Goren L, Zamir D, Hirschberg J (2000) An alternative pathway to beta-carotene formation in plant chromoplasts discovered by map-based cloning of beta and old-gold color mutations in tomato. Proc Natl Acad Sci USA 97: 11102-11107
35. Skelton RL, Yu Q, Srinivasan R, Manshardt R, Moore PH, Ming R (2006) Tissue differential expression of lycopene b-cyclase gene in papaya. Cell Res 16: 731-739
36. Storey WB (1969) Papaya. In FP Ferwerda, F Wit, eds, Outlines of Perennial Crop Breeding in the Tropics. H Veenman & Zonen, Wageningen, The Netherlands, pp 21-24
37. Suzuki JY, Tripathi S, Fermín GA, Jan FJ, Hou S, Saw JH, Ackerman CM, Yu Q, Schatz MC, Pitz KY, et al (2008) Characterization of insertion sites in Rainbow papaya, the first commercialized transgenic fruit crop. Trop Plant Biol 1: 293-309
38. Wang J, Chen C, Na JK, Yu Q, Hou S, Paull RE, Moore PH, Alam M, Ming R (2008) Genome-wide comparative analysis of microsatellites in papaya. Trop Plant Biol 1: 278-292
39. Weil CF (2002) Finding the crosswalks on DNA. Proc Natl Acad Sci USA 99: 5763-5765
40. World Health Organization (2007) Vitamin A Deficiency. World Health Organization. http://www.who.int/nutrition/topics/vad/en/ (March 4,2010)
41. Yamamoto HY (1964) Comparison of the carotenoids in yellow-and red-fleshed Carica papaya. Nature 201: 1049-1050
42. Yu Q, Tong E, Skelton RL, Bowers JE, Jones MR, Murray JE, Hou S, Guan P, Acob RA, Luo MC, et al (2009) A physical map of the papaya genome with integrated genetic map and genome sequence. BMC Genomics 10: 371-382