Novel method for genotyping hepatitis B virus on the basis of taqMan real-time PCR

Journal of Clinical Microbiology

Volumn 48, Issue 4, 2010, Pages 1105-1111

  Malmström, Sebastian ^a   Berglin Enquist, Ida ^b   Lindh, Magnus ^c  

^a UNIVERSITY OF GOTHENBURG   (Sweden)

^b GENENTECH INC   (United States)

^c NONE

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS DNA;

ARTICLE; DIAGNOSTIC ACCURACY; GENE SEQUENCE; GENOTYPE; HEPATITIS B VIRUS; HYDROLYSIS; NONHUMAN; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; VIRAL GENETICS; VIRUS GENE;

DNA, VIRAL; HEPATITIS B VIRUS; HEPATITIS B, CHRONIC; HUMANS; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; VIROLOGY;

HEPATITIS B VIRUS;

EID: 77950510124     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.01442-09     Document Type: Article

References (32)

1. 1. Chan, H. L., A. Y. Hui, M. L. Wong, A. M. Tse, L. C. Hung, V. W. Wong, and J. J. Sung. 2004. Genotype C hepatitis B virus infection is associated with an increased risk of hepatocellular carcinoma. Gut 53:1494-1498. (Pubitemid 39265273)
2. Chan, H. L., M. L. Wong, A. Y. Hui, L. C. Hung, F. K. Chan, and J. J. Sung. 2003. Hepatitis B virus genotype C takes a more aggressive disease course than hepatitis B virus genotype B in hepatitis B e antigen-positive patients. J. Clin. Microbiol. 41:1277-1279.
3. Chen, B. F., P. J. Chen, G. M. Jow, E. Sablon, C. J. Liu, D. S. Chen, and J. H. Kao. 2004. High prevalence of mixed genotype infections in hepatitis B virus infected intravenous drug users. J. Med. Virol. 74:536-542.
4. Chen, J., J. Yin, X. Tan, H. Zhang, H. Zhang, B. Chen, W. Chang, S. Schaefer, and G. Cao. 2007. Improved multiplex-PCR to identify hepatitis B virus genotypes A-F and subgenotypes B1, B2, C1 and C2. J. Clin. Virol. 38:238-243.
5. 5. Chu, C. J., M. Hussain, and A. S. Lok. 2002. Hepatitis B virus genotype B is associated with earlier HBeAg seroconversion compared with hepatitis B virus genotype C. Gastroenterology 122:1756-1762. (Pubitemid 34651418)
6. Chu, C. J., E. B. Keeffe, S. H. Han, R. P. Perrillo, A. D. Min, C. Soldevila-Pico, W. Carey, R. S. Brown, Jr., V. A. Luketic, N. Terrault, and A. S. Lok. 2003. Hepatitis B virus genotypes in the United States: results of a nationwide study. Gastroenterology 125:444-451.
7. 7. Chu, C. J., and A. S. Lok. 2002. Clinical significance of hepatitis B virus genotypes. Hepatology 35:1274-1276. (Pubitemid 34454026)
8. Hannoun, C., K. Krogsgaard, P. Horal, and M. Lindh. 2002. Genotype mixtures of hepatitis B virus in patients treated with interferon. J. Infect. Dis. 186:752-759.
9. Hannoun, C., H. Norder, and M. Lindh. 2000. An aberrant genotype revealed in recombinant hepatitis B virus strains from Vietnam. J. Gen. Virol. 81:2267-2272.
10. Huy, T. T. T., T. N. Trinh, and K. Abe. 2008. New complex recombinant genotype of hepatitis B virus in Vietnam. J. Virol. 82:5657-5663.
11. Jardi, R., F. Rodriguez-Frias, M. Schaper, E. Giggi, D. Tabernero, M. Homs, R. Esteban, and M. Buti. 2008. Analysis of hepatitis B genotype changes in chronic hepatitis B infection: influence of antiviral therapy. J. Hepatol. 49:695-701.
12. 12. Kao, J. H., P. J. Chen, M. Y. Lai, and D. S. Chen. 2000. Hepatitis B genotypes correlate with clinical outcomes in patients with chronic hepatitis B. Gastroenterology 118:554-559. (Pubitemid 30140853)
13. Kao, J. H., N. H. Wu, P. J. Chen, M. Y. Lai, and D. S. Chen. 2000. Hepatitis B genotypes and the response to interferon therapy. J. Hepatol. 33:998-1002.
14. Kew, M. C., A. Kramvis, M. C. Yu, K. Arakawa, and J. Hodkinson. 2005. Increased hepatocarcinogenic potential of hepatitis B virus genotype A in Bantu-speaking sub-Saharan Africans. J. Med. Virol. 75:513-521.
15. Kirschberg, O., C. Schuttler, R. Repp, and S. Schaefer. 2004. A multiplex-PCR to identify hepatitis B virus-genotypes A-F. J. Clin. Virol. 29:39-43.
16. Lin, C. L., and J. H. Kao. 2008. Hepatitis B viral factors and clinical outcomes of chronic hepatitis B. J. Biomed Sci. 15:137-145.
17. Lindh, M., A. S. Andersson, and A. Gusdal. 1997. Genotypes, nt 1858 variants, and geographic origin of hepatitis B virus - large-scale analysis using a new genotyping method. J. Infect. Dis. 175:1285-1293.
18. 18. Lindh, M., J. E. Gonzalez, G. Norkrans, and P. Horal. 1998. Genotyping of hepatitis B virus by restriction pattern analysis of a pre-S amplicon. J. Virol. Methods 72:163-174. (Pubitemid 28306959)
19. Lindh, M., P. Horal, A. P. Dhillon, and G. Norkrans. 2000. Hepatitis B virus DNA levels, precore mutations, genotypes and histological activity in chronic hepatitis B. J. Viral Hepat. 7:258-267.
20. Liu, W. C., M. Mizokami, M. Buti, M. Lindh, K. C. Young, K. T. Sun, Y. C. Chi, H. H. Li, and T. T. Chang. 2006. Simultaneous quantification and genotyping of hepatitis B virus for genotypes A to G by real-time PCR and two-step melting curve analysis. J. Clin. Microbiol. 44:4491-4497.
21. 21. Liu, W. C., P. H. Phiet, T. Y. Chiang, K. T. Sun, K. H. Hung, K. C. Young, I. C. Wu, P. N. Cheng, and T. T. Chang. 2007. Five subgenotypes of hepatitis B virus genotype B with distinct geographic and virological characteristics. Virus Res. 129:212-223. (Pubitemid 47588438)
22. Madan, K., Y. Batra, V. Sreenivas, M. Mizokami, Y. Tanaka, S. B. Chalamalasetty, S. K. Panda, and S. K. Acharya. 2009. HBV genotypes in India: do they influence disease severity? Hepatol. Res. 39:157-163.
23. Naito, H., S. Hayashi, and K. Abe. 2001. Rapid and specific genotyping system for hepatitis B virus corresponding to six major genotypes by PCR using type-specific primers. J. Clin. Microbiol. 39:362-364.
24. 24. Norder, H., A. M. Courouce, P. Coursaget, J. M. Echevarria, S. D. Lee, I. K. Mushahwar, B. H. Robertson, S. Locarnini, and L. O. Magnius. 2004. Genetic diversity of hepatitis B virus strains derived worldwide: genotypes, subgenotypes, and HBsAg subtypes. Intervirology 47:289-309. (Pubitemid 39541275)
25. Osiowy, C., and E. Giles. 2003. Evaluation of the INNO-LiPA HBV genotyping assay for determination of hepatitis B virus genotype. J. Clin. Microbiol. 41:5473-5477.
26. Sakamoto, T., Y. Tanaka, E. Orito, J. Co, J. Clavio, F. Sugauchi, K. Ito, A. Ozasa, A. Quino, R. Ueda, J. Sollano, and M. Mizokami. 2006. Novel subtypes (subgenotypes) of hepatitis B virus genotypes B and C among chronic liver disease patients in the Philippines. J. Gen. Virol. 87:1873-1882.
27. 27. Sanchez-Tapias, J. M., J. Costa, A. Mas, M. Bruguera, and J. Rodes. 2002. Influence of hepatitis B virus genotype on the long-term outcome of chronic hepatitis B in western patients. Gastroenterology 123:1848-1856. (Pubitemid 35408309)
28. Schaefer, S. 2007. Hepatitis B virus taxonomy and hepatitis B virus genotypes. World J. Gastroenterol. 13:14-21.
29. Schaefer, S. 2005. Hepatitis B virus: significance of genotypes. J. Viral Hepat. 12:111-124.
30. Wai, C. T., C. J. Chu, M. Hussain, and A. S. Lok. 2002. HBV genotype B is associated with better response to interferon therapy in HBeAg(+) chronic hepatitis than genotype C. Hepatology 36:1425-1430.
31. 31. Westland, C., W. T. Delaney, H. Yang, S. S. Chen, P. Marcellin, S. Hadziyannis, R. Gish, J. Fry, C. Brosgart, C. Gibbs, M. Miller, and S. Xiong. 2003. Hepatitis B virus genotypes and virologic response in 694 patients in phase III studies of adefovir dipivoxil1. Gastroenterology 125:107-116. (Pubitemid 36799112)
32. 32. Zeng, G., Z. Wang, S. Wen, J. Jiang, L. Wang, J. Cheng, D. Tan, F. Xiao, S. Ma, W. Li, K. Luo, N. V. Naoumov, and J. Hou. 2005. Geographic distribution, virologic and clinical characteristics of hepatitis B virus genotypes in China. J. Viral Hepat. 12:609-617. (Pubitemid 41532492)