Chemical cross-linking and mass spectrometry as a low-resolution protein structure determination technique

Analytical Chemistry

Volumn 82, Issue 7, 2010, Pages 2636-2642

  Singh, Pragya ^a   Panchaud, Alexandre ^a   Goodlett, David R ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMICAL EXPERIMENTS; CELLULAR PROCESS; CENTRAL PROBLEMS; CHEMICAL CROSS-LINKING; COMPUTER PROGRAM; DATA ANALYSIS; EASE OF USE; LOW-RESOLUTION PROTEIN STRUCTURES; MASS ACCURACY; MASS RESOLUTION; PROTEIN COMPLEXES; STRUCTURAL ELUCIDATION; THREE-DIMENSIONAL STRUCTURE;

COMPLEXATION; CROSSLINKING; MASS SPECTROMETRY;

PROTEINS;

CROSS LINKING REAGENT; PROTEIN;

ARTICLE; BIOLOGY; CHEMISTRY; ISOTOPE LABELING; MASS SPECTROMETRY; METHODOLOGY; PROTEIN CONFORMATION;

COMPUTATIONAL BIOLOGY; CROSS-LINKING REAGENTS; ISOTOPE LABELING; MASS SPECTROMETRY; PROTEIN CONFORMATION; PROTEINS;

EID: 77950415030     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac1000724     Document Type: Article

References (29)

1. Suchanek, M.; Radzikowska, A.; Thiele, C. Nat. Meth. 2005, 2, 261-268.
2. Zhang, H.; Tang, X.; Munske, G. R.; Tolic, N.; Anderson, G. A.; Bruce, J. E. Mol. Cell. Proteomics 2009, 8, 409-420.
3. Back, J. W.; de Jong, L.; Muijsers, A. O.; de Koster, C. G. J. Mol. Biol. 2003, 331, 303-313.
4. Sinz, A-J. Mass Spectrom. 2003, 38, 1225-1237.
5. Sinz, A. Mass Spectrom. Rev. 2006, 25, 663-682.
6. Pierce. Rockford, IL, 2003.
7. Chen, X.; Chen, Y. H.; Anderson, V. E. Anal. Biochem. 1999, 273, 192-203.
8. Taverner, T.; Hall, N. E.; O'Hair, R. A. J.; Simpson, R. J. J. Biol. Chem. 2002, 277, 46487-46492.
9. Back, J. W.; Notenboom, V.; de Koning, L. J.; Muijsers, A. O.; Sixma, T. K.; de Koster, C. G.; de Jong, L. Anal. Chem. 2002, 74, 4417-4422.
10. Muller, D. R.; Schindler, P.; Towbin, H.; Wirth, U.; Voshol, H.; Hoving, S.; Steinmetz, M. O. Anal. Chem. 2001, 73, 1927-1934.
11. Collins, C. J.; Schilling, B.; Young, M.; Dollinger, G.; Guy, R. K. Bioorg. Med. Chem. Lett. 2003, 13, 4023-4026.
12. Back, J. W.; Hartog, A. F.; Dekker, H. L.; Muijsers, A. O.; de Koning, L. J.; de Jong, L. J. Am. Soc. Mass Spectrom. 2001, 12, 222-227.
13. Soderblom, E. J.; Bobay, B. J.; Cavanagh, J.; Goshe, M. B. Rapid Commun. Mass Spectrom. 2007, 21, 3395-3408.
14. Soderblom, E. J.; Goshe, M. B. Anal. Chem. 2006, 78, 8059-8068.
15. Lu, Y.; Tanasova, M.; Borhan, B.; Reid, G. E. Anal. Chem. 2008, 80, 9279-9287.
16. Tang, X.; Munske, G. R.; Siems, W. F.; Bruce, J. E. Anal. Chem. 2005, 77, 311-318.
17. Zhang, H.; Tang, X.; Munske, G. R.; Zakharova, N.; Yang, L.; Zheng, C.; Wolff, M. A; Tolic, N.; Anderson, G. A; Shi, L; Marshall, M. J.; Fredrickson, J. K.; Bruce, J. E. J. Proteome Res. 2008, 7, 1712-1720.
18. Chowdhury, S. M.; Munske, G. R.; Tang, X.; Bruce, J. E. Anal. Chem. 2006, 78, 8183-8193.
19. Gardner, M. W.; Vasicek, L. A.; Shabbir, S.; Anslyn, E. V.; Brodbelt, J. S. Anal. Chem. 2008, 80, 4807-4819.
20. Rinner, O.; Seebacher, J.; Walzthoeni, T.; Mueller, L.; Beck, M.; Schmidt, A.; Mueller, M.; Aebersold, R. Nat. Meth. 2008, 5, 315-318.
21. Singh, P.; Shaffer, S. A.; Scherl, A.; Holman, C; Pfuetzner, R. A.; Larson Freeman, T. J.; Miller, S. I.; Hernandez, P.; Appel, R. D.; Goodlett, D. R. Anal. Chem. 2008, 80, 8799-8806.
22. Gao, Q.; Xue, S.; Doneanu, C. E.; Shaffer, S. A.; Goodlett, D. R.; Nelson, S. D. Anal. Chem. 2006, 78, 2145-2149.
23. Seebacher, J.; Mallick, P.; Zhang, N.; Eddes, J. S.; Aebersold, R.; Gelb, M. H. J. Proteome Res. 2006, 5, 2270-2282.
24. Lee, Y. J.; Lackner, L. L.; Nunnari, J. M.; Phinney, B. S. J. Proteome Res. 2007, 6, 3908-3917.
25. Maiolica, A.; Cittaro, D.; Borsotti, D.; Sennels, L.; Ciferri, C; Tarricone, C; Musacchio, A.; Rappsilber, J. Mol. Cell. Proteomics 2007, 6, 2200-2211.
26. Hernandez, P.; Gras, R.; Frey, J.; Appel, R. D. Proteomics 2003, 3, 870-878.
27. Schmitt-Ulms, G.; Hansen, K.; Liu, J.; Cowdrey, C.; Yang, J.; DeArmond, S. J.; Cohen, F. E.; Prusiner, S. B.; Baldwin, M. A. Nat. Biotechnol. 2004, 22, 724-731.
28. Bai, Y.; Markham, K.; Chen, F.; Weerasekera, R.; Watts, J.; Home, P.; Wakutani, Y.; Bagshaw, R.; Mathews, P. M.; Fraser, P. E.; Westaway, D.; St. George-Hyslop, P.; Schmitt-Ulms, G. Mol. Cell. Proteomics 2008, 7,1534.
29. Heymann, M.; Paramelle, D.; Subra, G.; Forest, E.; Martinez, J.; Geourjon, C.; Deleage, G. Bioinformatics 2008, 24, 2782-2783.