Phylogeography and population structure of Glossina fuscipes fuscipes in Uganda: Implications for control of tsetse

PLoS Neglected Tropical Diseases

Volumn 4, Issue 3, 2010, Pages

  Beadell, Jon S ^a   Hyseni, Chaz ^a   Abila, Patrick P ^b   Azabo, Rogers ^b   Enyaru, John C K ^c   Ouma, Johnson O ^d   Mohammed, Yassir O ^e   Okedi, Loyce M ^b   Aksoy, Serap ^a   Caccone, Adalgisa ^a  

^a YALE UNIVERSITY   (United States)

^b National Livestock Resources Research Institute   (Uganda)

^c MAKERERE UNIVERSITY   (Uganda)

^d KENYA AGRICULTURAL RESEARCH INSTITUTE   (Kenya)

^e Central Veterinary Research Laboratory Sudan   (Sudan)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME B; CYTOCHROME C OXIDASE; CYTOCHROME OXIDASE 1; MITOCHONDRIAL DNA; UNCLASSIFIED DRUG; MICROSATELLITE DNA;

AFRICAN TRYPANOSOMIASIS; ANIMAL TISSUE; ARTICLE; CORRELATION ANALYSIS; CYTOCHROME B GENE; CYTOCHROME OXIDASE I GENE; EFFECTIVE POPULATION SIZE; GENE; GENE FLOW; GENETIC ISOLATION BY DISTANCE; GENETIC VARIABILITY; GLOSSINA; GLOSSINA FUSCA; INSECT GENETICS; MICROSATELLITE MARKER; NONHUMAN; PARSIMONY ANALYSIS; PHYLOGEOGRAPHY; POPULATION GENETIC STRUCTURE; UGANDA; VALIDATION PROCESS; VECTOR CONTROL; ANIMAL; CLASSIFICATION; CLUSTER ANALYSIS; DISEASE CARRIER; GENETICS; GEOGRAPHY; HUMAN; KENYA; PHYLOGENY; SUDAN; TSETSE FLY;

ANIMALS; CLUSTER ANALYSIS; DISEASE VECTORS; DNA, MITOCHONDRIAL; GENE FLOW; GEOGRAPHY; HUMANS; KENYA; MICROSATELLITE REPEATS; PHYLOGENY; SUDAN; TSETSE FLIES; UGANDA;

EID: 77950407523     PISSN: None     EISSN: None     Source Type: Journal    
DOI: 10.1371/journal.pntd.0000636     Document Type: Article

References (67)

1. Hotez PJ, Kamath A (2009) Neglected tropical diseases in sub-Saharan Africa: review of their prevalence, distribution, and disease burden. PLoS Neglect Trop D 3(8): e412.
2. Aksoy S (2003) Control of tsetse flies and trypanosomes using molecular genetics. Vet Parasitol 115: 125-145.
3. Torr S, Hargrove J, Vale G (2005) Towards a rational policy for dealing with tsetse. Trends Parasitol 21: 537-541.
4. Maudlin I (2006) African trypanosomiasis. Annals Trop Med Parasitol 100: 679-701.
5. Vreysen MJB (2006) Prospects for area-wide integrated control of tsetse flies (Diptera: Glossinidae) and trypanosomosis in sub-Saharan Africa. Rev Soc Entomol Argent 65: 1-21.
6. Schofield CJ, Kabayo JP (2008) Trypanosomiasis vector control in Africa and Latin America. Parasite Vect 1: 24. doi:10.1186/1756-3305-1-24.
7. Kabayo JP (2002) Aiming to eliminate tsetse from Africa. Trends Parasitol 18(11): 473-475.
8. Cohuet A, Dia I, Simard F, Raymond M, Rousset F, et al. (2005) Gene flow between chromosomal forms of the malaria vector Anopheles funestus in Cameroon, Central Africa, and its relevance in malaria fighting. Genetics 169: 301-311.
9. Tripet F, Dolo G, Lanzaro GC (2005) Multilevel analyses of genetic differentiation in Anopheles gambiae s.s. reveal patterns of gene flow important for malaria-fighting mosquito projects. Genetics 169: 313-324.
10. Berrang-Ford L, Odiit M, Maiso F, Waltner-Toews D, McDermott J (2006) Sleeping sickness in Uganda: revisiting current and historical distributions. Afr Health Sci 6(4): 223-231.
11. Picozzi K, Fevre EM, Odiit M, Carrington M, Eisler MC, et al. (2008) Sleeping sickness in Uganda: a thin line between two fatal diseases. BMJ 331: 1238-1241.
12. Abila PP, Slotman MA, Parmakelis A, Dion K, Robinson AS, et al. (2008) High levels of genetic differentiation between Ugandan Glossina fuscipes fuscipes populations separated by Lake Kyoga. PLoS Neglect Trop D 2(5): e242.
13. Krafsur ES, Marquez JG, Ouma JO (2008) Structure of some East African Glossina fuscipes fuscipes populations. Med Vet Entomol 22: 222-227.
14. Challier A, Laveissiere C (1973) Un nouveau piège pour la capture des glossines (Glossina: Diptera, Muscidae): description et essais sur le terrain. Cah ORSTOM sér Ent Méd Parasitol 11: 251-262.
15. Simon C, Frati F, Beckenbach A, Crespi B, Liu H, et al. (1994) Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann Entomol Soc Am87(6): 651-701.
16. Richly E, Leister D (2004) NUMTs in sequenced eukaryotic genomes. Mol Biol Evol 21(6): 1081-1084.
17. Brown JE, Komatsu KJ, Abila PP, Robinson AS, Okedi LM, et al. (2008) Polymorphic microsatellite markers for the tsetse fly Glossina fuscipes fuscipes (Diptera: Glossinidae), a vector of human African trypanosomiasis. Mol Ecol Res 8: 1506-1508.
18. Ouma J, Cummings MA, Jones KC, Krafsur ES (2003) Characterization of microsatellite markers in the tsetse fly, Glossina pallidipes (Diptera: Glossinidae). Mol Ecol Notes 3: 450-453.
19. Luna C, Bonizzoni M, Cheng Q, Robinson AS, Aksoy S, et al. (2001) Microsatellite polymorphism in tsetse flies (Diptera: Glossinidae). J Med Entomol 38(3): 376-381.
20. Baker MD, Krafsur ES (2001) Identification and properties of microsatellite markers in tsetse flies Glossina morsitans sensu lato (Diptera: Glossinidae). Mol Ecol Notes 1: 234-236.
21. Boutin-Ganache I, Raposo M, Raymond M, Deschepper C (2001) M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods. Biotechniques 31: 26-28.
22. Librado P, Rozas J (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
23. Rousset F (2008) GENEPOP'007: a complete re-implementation of the Genepop software for Windows and Linux. Mol Ecol Res 8: 103-106.
24. Goudet J (1995) FSTAT (version 1.2): a computer program to calculate F-statistics. J Hered 86: 485-486.
25. Clement M, Posada D, Crandall K (2000) TCS: a computer program to estimate gene genealogies. Mol Ecol 9(10): 1657-1660.
26. Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9: 552-569.
27. Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925.
28. Ramos-Onsins SE, Rozas J (2002) Statistical properties of new neutrality tests against population growth. Mol Biol Evol 19(12): 2092-2100.
29. de Meeûs T, McCoy KD, Prugnolle F, Chevillon C, Durand P, et al. (2007) Population genetics and molecular epidemiology or how to "débusquer la bête." Infect Genet Evol 7: 308-332.
30. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: an integrated software package for population genetics data analysis. Evol Bioinf Online 1: 47-50.
31. Pritchard JK, Stephens P, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
32. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of cluster of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14: 2611-2620.
33. Guillot G, Estoup A, Mortier F, Cosson JF (2005) A spatial statistical model for landscape genetics. Genetics 170: 1261-1280.
34. Goudet J (2005) HIERFSTAT, a package for R to compute and test hierarchical F-statistics. Mol Ecol Notes 5: 184-186.
35. Dieringer D, Schlotterer C (2003) MICROSATELLITE ANALYSER (MSA): a platform independent analysis tool for large microsatellite data sets. Mol Ecol Notes 3: 167-169.
36. Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145: 1219-1228.
37. Jensen JL, Bohonak AJ, Kelley ST (2005) Isolation by distance, web service. BMC Genetics 6: 13. v.3.16 http://ibdws.sdsu.edu/.
38. Waples RS, Do C (2008) LDNE: a program for estimating effective population size from data on linkage disequilibrium. Mol Ecol Res 8: 753-756.
39. Tallmon DA, Koyuk A, Luikart G, Beaumont MA (2008) ONeSAMP: a program to estimate effective population size using approximate Bayesian computation. Mol Ecol Res 8: 299-301.
40. Piry S, Luikart G, Cornuet J-M (1999) BOTTLENCK: A computer program for detecting recent reductions in the effective population size using allele frequency data. J Hered 90: 502-503.
41. de Meeûs T, Guegan J-F, Teriokhin AT (2009) MultiTest V.1.2, a program to binomially combine independent tests and performance comparison with other related methods on proportional data. BMC Bioinform 10: 443.
42. van Oosterhout C, Hutchinson WF, Shipley P (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: 535-538.
43. Nei M, Li W-H (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci U S A 76: 5269-5273.
44. Tamura K (1992) The rate and pattern of nucleotide substitution in Drosophila mitochondrial DNA. Mol Biol Evol 9(5): 814-825.
45. Hutchison DW, Templeton AR (1999) Correlation of pairwise genetic and geographic distance measures: inferring the relative influences of gene flow and drift on the distribution of genetic variability. Evolution 53: 1898-1914.
46. Moloo SK, Kabata JM, Waweru F, Gooding RH (1998) Selection of susceptible and refractory lines of Glossina morsitans centralis for Trypanosoma congolense infection and their susceptibility to different pathogenic Trypanosoma species. Med Vet Entomol 12: 391-398.
47. Geiger A, Ravel S, Mateille T, Janelle J, Patrel D, et al. (2006) Vector competence of Glossina palpalis gambiensis for Trypanosoma brucei s.l. and genetic diversity of the symbiont Sodalis glossinidius. Mol Biol Evol 24: 102-109.
48. Pais R, Lohs C, Wu Y, Wang J, Aksoy S (2008) The obligate mutualist Wigglesworthia glossinidia influences reproduction, digestion, and immunity processes of its host, the tsetse fly. Appl Env Microbiol 74(19): 5965-5974.
49. Farikou O, Njiokou F, Mbida Mbida JA, Njitchouang GR, Djeunga HN, et al. (2010) Tripartite interactions between tsetse flies, Sodalis glossinidius and trypanosomes - an epidemiological approach in two historical human African trypanosomiasis foci in Cameroon. Infect Genet Evol 10: 115-121.
50. Scholz CA, Johnson TC, Cohen AS, King JW, Peck JA, et al. (2007) East African megadroughts between 135 and 75 thousand years ago and bearing on early-modern human origins. Proc Natl Acad Sci U S A 104: 16416-16421.
51. Barker P, Gasse F (2003) New evidence for a reduced water balance in East Africa during the Last Glacial Maximum: implication for model-data comparison. Quat Sci Rev 22: 823-837.
52. Johnson TC, Scholz CA, Talbot MR, Kelts K, Ricketts RD, et al. (1996) Late pleistocene dessication of Lake Victoria and rapid evolution of cichlid fishes. Science 273: 1091-1093.
53. Gooding RH, Solano P, Ravel S (2004) X-chromosome mapping experiments suggest occurrence of cryptic species in the tsetse fly Glossina palpalis palpalis. Can J Zool 82: 1902-1909.
54. Buxton PA, Lewis DJ (1934) Climate and tsetse flies: laboratory studies upon Glossina submorsitans and tachinoides. Philos T R Soc B 224: 175-240.
55. Rogers DJ (1977) Study of a natural population of tsetse flies and a model for fly movement. J Animal Ecol 46: 309-330.
56. Cuisance D, Fevrier J, Dejardi J, Fillidier J (1985) Linear dispersal of Glossina palpalis gambiensis and Glossina tachinoides in a forest gallery in the Sudan Guinean area (Burkina Faso). Rev d'Elev Med Vet Pays Trop 38: 153-172.
57. Bouyer J, Balenghien T, Ravel S, Vial L, Sidibé I, et al. (2009) Population sizes and dispersal pattern of tsetse flies: rolling on the river? Mol Ecol 18: 2787-2797.
58. Ravel S, de Meeûs T, Dujardin JP, Zeze DG, Gooding RH, et al. (2007) The tsetse fly Glossina palpalis palpalis is composed of several genetically differentiated small populations in the sleeping sickness focus of Bonon, Côte d'Ivoire. Infect Genet Evol 7: 116-125.
59. Solano P, de la Rocque S, de Meeûs T, Cuny G, Duvalle G, et al. (2000) Microsatellite DNA markers reveal genetic differentiation among populations of Glossina palpalis gambiensis collected in the agro-pastoral zone of Sideradougou, Burkina Faso. Insect Mol Biol 9(4): 433-439.
60. Camara M, Caro-Riaño H, Ravel S, Dujardin J-P, Hervouet J-P, et al. (2006) Genetic and morphometric evidence for population isolation of Glossina palpalis gambiensis (Diptera: Glossinidae) on the Loos Islands, Guinea. J Med Entomol 43: 853-860.
61. Bouyer J, Ravel S, Dujardin J-P, de Meeûs T, Vial L, et al. (2007) Population structuring of Glossina palpalis gambiensis (Diptera: Glossinidae) according to landscape fragmentation in the Mouhoun River, Burkina Faso. J Med Entomol 44: 788-795.
62. Dyer NA, Furtado A, Cano J, Ferreira F, Afonso MO, et al. (2009) Evidence for a discrete evolutionary lineage within Equatorial Guinea suggests that the tsetse fly Glossina palpalis palpalis exists as a species complex. Mol Ecol 18: 3268-3282.
63. Solano P, Ravel S, Bouyer J, Camara M, Kagbadouno MS, et al. (2009) The population structure of Glossina palpalis gambiensis from island and continental locations in coastal Guinea. PLoS Neglect Trop D 3(3): e392.
64. Wegmann D, Currat M, Excoffier L (2006) Molecular diversity after a range expansion in heterogeneous environments. Genetics 174: 2009-2020.
65. Krafsur ES (2009) Tsetse flies: genetics, evolution, and role as vectors. Infect Genet Evol 9: 124-141.
66. Cornuet J-M, Luikart G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144: 2001-2014.
67. Wint W, Rogers D (2000) Predicted distributions of tsetse in Africa. Consultancy Report for the Animal Health Service of the Animal Production and Health Division of the Food and Agricultural Organization of the United Nations. FAO, Rome. http://www.fao.org/ag/againfo/programmes/en/paat/documents/maps/pdf/ tserep.pdf.