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Volumn 33, Issue 2, 2010, Pages 67-70

Comparison of 16S rRNA gene phylogeny and functional tfdA gene distribution in thirty-one different 2, 4-dichlorophenoxyacetic acid and 4-chloro-2-methylphenoxyacetic acid degraders

Author keywords

Bacterial degraders; Biodegradation; Microbial ecology; Mineralization; Phenoxy acid

Indexed keywords

2 (4 CHLORO 2 METHYLPHENOXY)ACETIC ACID; 2,4 DICHLOROPHENOXYACETIC ACID; BACTERIAL PROTEIN; PROTEIN TFDA; RNA 16S; UNCLASSIFIED DRUG;

EID: 77950370424     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2010.01.001     Document Type: Article
Times cited : (35)

References (26)
  • 1
    • 2142825479 scopus 로고    scopus 로고
    • Presence of 2,4-D-catabolizing bacteria in a Japanese arable soil that belong to BANA (Bradyrhizobium-Agromonas-Nitrobacter-Afipia) cluster in α-Proteobacteria
    • Itoh K., Kanda R., Momoda Y., Sumita Y., Kamagata Y., Suyama K., Yamamoto H. Presence of 2,4-D-catabolizing bacteria in a Japanese arable soil that belong to BANA (Bradyrhizobium-Agromonas-Nitrobacter-Afipia) cluster in α-Proteobacteria. Microbes Environ. 2000, 15:113-117.
    • (2000) Microbes Environ. , vol.15 , pp. 113-117
    • Itoh, K.1    Kanda, R.2    Momoda, Y.3    Sumita, Y.4    Kamagata, Y.5    Suyama, K.6    Yamamoto, H.7
  • 2
    • 0002417001 scopus 로고
    • Evolution and spread of pesticide degrading ability among soil microorganisms
    • Elsevier, Amsterdam, K.N. Timmis, A. Pühler (Eds.)
    • Pemberton J.M., Corney B., Don R.H. Evolution and spread of pesticide degrading ability among soil microorganisms. Plasmids of Medical, Environmental and Commercial Importance 1979, 287-299. Elsevier, Amsterdam. K.N. Timmis, A. Pühler (Eds.).
    • (1979) Plasmids of Medical, Environmental and Commercial Importance , pp. 287-299
    • Pemberton, J.M.1    Corney, B.2    Don, R.H.3
  • 3
    • 0028833294 scopus 로고
    • Polyphasic characterization of a suite of bacterial isolates capable of degrading 2,4-D
    • Tonso N.L., Matheson V.G., Holben W.E. Polyphasic characterization of a suite of bacterial isolates capable of degrading 2,4-D. Microb. Ecol. 1995, 30:3-24.
    • (1995) Microb. Ecol. , vol.30 , pp. 3-24
    • Tonso, N.L.1    Matheson, V.G.2    Holben, W.E.3
  • 4
    • 33144468213 scopus 로고    scopus 로고
    • Degradation of 2-methyl-4-chlorophenoxyacetic acid in top- and subsoil is quantitatively linked to the class III tfdA gene
    • BÆlum J., Henriksen T., Hansen H.C.B., Jacobsen C.S. Degradation of 2-methyl-4-chlorophenoxyacetic acid in top- and subsoil is quantitatively linked to the class III tfdA gene. Appl. Environ. Microbiol. 2006, 72:1476-1486.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 1476-1486
    • BÆlum, J.1    Henriksen, T.2    Hansen, H.C.B.3    Jacobsen, C.S.4
  • 5
    • 44849121863 scopus 로고    scopus 로고
    • Direct analysis of tfdA gene expression by indigenous bacteria in phenoxy acid amended agricultural soil
    • BÆlum J., Nicolaisen M.H., Holben W.E., Strobel B.W., Sorensen J., Jacobsen C.S. Direct analysis of tfdA gene expression by indigenous bacteria in phenoxy acid amended agricultural soil. ISME J. 2008, 2:677-687.
    • (2008) ISME J. , vol.2 , pp. 677-687
    • BÆlum, J.1    Nicolaisen, M.H.2    Holben, W.E.3    Strobel, B.W.4    Sorensen, J.5    Jacobsen, C.S.6
  • 6
    • 0031009131 scopus 로고    scopus 로고
    • Pristine environments harbor a new group of oligotrophic 2,4-dichlorophenoxyacetic acid-degrading bacteria
    • Kamagata Y., Fulthorpe R.R., Tamura K., Takami H., Forney L.J., Tiedje J.M. Pristine environments harbor a new group of oligotrophic 2,4-dichlorophenoxyacetic acid-degrading bacteria. Appl. Environ. Microbiol. 1997, 63:2266-2272.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2266-2272
    • Kamagata, Y.1    Fulthorpe, R.R.2    Tamura, K.3    Takami, H.4    Forney, L.J.5    Tiedje, J.M.6
  • 7
    • 0028265724 scopus 로고
    • Genetic and phenotypic diversity of 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils
    • Ka J.O., Holben W.E., Tiedje J.M. Genetic and phenotypic diversity of 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils. Appl. Environ. Microbiol. 1994, 60:1106-1115.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 1106-1115
    • Ka, J.O.1    Holben, W.E.2    Tiedje, J.M.3
  • 8
    • 0022003968 scopus 로고
    • Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes-eutrophus JMP134(pJP4)
    • Don R.H., Weightman A.J., Knackmuss H.J., Timmis K.N. Transposon mutagenesis and cloning analysis of the pathways for degradation of 2,4-dichlorophenoxyacetic acid and 3-chlorobenzoate in Alcaligenes-eutrophus JMP134(pJP4). J. Bacteriol. 1985, 161:85-90.
    • (1985) J. Bacteriol. , vol.161 , pp. 85-90
    • Don, R.H.1    Weightman, A.J.2    Knackmuss, H.J.3    Timmis, K.N.4
  • 9
    • 0027484167 scopus 로고
    • Purification and characterization of 2,4-dichlorophenoxyacetate α-ketoglutarate dioxygenase
    • Fukumori F., Hausinger R.P. Purification and characterization of 2,4-dichlorophenoxyacetate α-ketoglutarate dioxygenase. J. Biol. Chem. 1993, 268:24311-24317.
    • (1993) J. Biol. Chem. , vol.268 , pp. 24311-24317
    • Fukumori, F.1    Hausinger, R.P.2
  • 10
    • 0001853051 scopus 로고
    • Metabolism of 2,4-dichlorophenoxyacetic acid, 4-chloro-2-methylphenoxyacetic acid and 2-methylphenoxyacetic acid by Alcaligenes eutrophus JMP134
    • Pieper D.H., Reineke W., Engesser K.H., Knackmuss H.J. Metabolism of 2,4-dichlorophenoxyacetic acid, 4-chloro-2-methylphenoxyacetic acid and 2-methylphenoxyacetic acid by Alcaligenes eutrophus JMP134. Arch. Microbiol. 1988, 150:95-102.
    • (1988) Arch. Microbiol. , vol.150 , pp. 95-102
    • Pieper, D.H.1    Reineke, W.2    Engesser, K.H.3    Knackmuss, H.J.4
  • 11
    • 0023191349 scopus 로고
    • Analysis, cloning, and high-level expression of 2,4-dichlorophenoxyacetate monooxygenase gene tfda of Alcaligenes eutrophus JMP134
    • Streber W.R., Timmis K.N., Zenk M.H. Analysis, cloning, and high-level expression of 2,4-dichlorophenoxyacetate monooxygenase gene tfda of Alcaligenes eutrophus JMP134. J. Bacteriol. 1987, 169:2950-2955.
    • (1987) J. Bacteriol. , vol.169 , pp. 2950-2955
    • Streber, W.R.1    Timmis, K.N.2    Zenk, M.H.3
  • 12
    • 0029903298 scopus 로고    scopus 로고
    • Characterization of a chromosomally encoded 2,4-dichlorophenoxyacetic acid α-ketoglutarate dioxygenase from Burkholderia sp strain RASC
    • Suwa Y., Wright A.D., Fukimori F., Nummy K.A., Hausinger R.P., Holben W.E., Forney L.J. Characterization of a chromosomally encoded 2,4-dichlorophenoxyacetic acid α-ketoglutarate dioxygenase from Burkholderia sp strain RASC. Appl. Environ. Microbiol. 1996, 62:2464-2469.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2464-2469
    • Suwa, Y.1    Wright, A.D.2    Fukimori, F.3    Nummy, K.A.4    Hausinger, R.P.5    Holben, W.E.6    Forney, L.J.7
  • 13
    • 0031660780 scopus 로고    scopus 로고
    • Evidence for interspecies gene transfer in the evolution of 2,4-dichlorophenoxyacetic acid degraders
    • Mcgowan C., Fulthorpe R., Wright A., Tiedje J.M. Evidence for interspecies gene transfer in the evolution of 2,4-dichlorophenoxyacetic acid degraders. Appl. Environ. Microbiol. 1998, 64:4089-4092.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4089-4092
    • Mcgowan, C.1    Fulthorpe, R.2    Wright, A.3    Tiedje, J.M.4
  • 14
    • 0036304247 scopus 로고    scopus 로고
    • TfdA-like genes in 2,4-dichlorophenoxyacetic acid-degrading bacteria belonging to the Bradyrhizobium-Agromonas-Nitrobacter-Afipia cluster in α-Proteobacteria
    • Itoh K., Kanda R., Sumita Y., Kim H., Kamagata Y., Suyama K., Yamamoto H., Hausinger R.P., Tiedje J.M. tfdA-like genes in 2,4-dichlorophenoxyacetic acid-degrading bacteria belonging to the Bradyrhizobium-Agromonas-Nitrobacter-Afipia cluster in α-Proteobacteria. Appl. Environ. Microbiol. 2002, 68:3449-3454.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3449-3454
    • Itoh, K.1    Kanda, R.2    Sumita, Y.3    Kim, H.4    Kamagata, Y.5    Suyama, K.6    Yamamoto, H.7    Hausinger, R.P.8    Tiedje, J.M.9
  • 15
    • 0342844467 scopus 로고    scopus 로고
    • Analysis of the 2,4-dichlorophenoxyacetic acid-degradative plasmid pEST4011 of Achromobacter xylosoxidans subsp denitrificans strain EST4002
    • Vedler E., Koiv V., Heinaru A. Analysis of the 2,4-dichlorophenoxyacetic acid-degradative plasmid pEST4011 of Achromobacter xylosoxidans subsp denitrificans strain EST4002. Gene 2000, 255:281-288.
    • (2000) Gene , vol.255 , pp. 281-288
    • Vedler, E.1    Koiv, V.2    Heinaru, A.3
  • 16
    • 0030200765 scopus 로고    scopus 로고
    • The metabolic pathway of 2,4-dichlorophenoxyacetic acid degradation involves different families of tfdA and tfdB genes according to PCR-RFLP analysis
    • Vallaeys T., Fulthorpe R.R., Wright A.M., Soulas G. The metabolic pathway of 2,4-dichlorophenoxyacetic acid degradation involves different families of tfdA and tfdB genes according to PCR-RFLP analysis. FEMS Microbiol. Ecol. 1996, 20:163-172.
    • (1996) FEMS Microbiol. Ecol. , vol.20 , pp. 163-172
    • Vallaeys, T.1    Fulthorpe, R.R.2    Wright, A.M.3    Soulas, G.4
  • 17
    • 0030958150 scopus 로고    scopus 로고
    • Genetic diversity through the looking glass: effect of enrichment bias
    • Dunbar J., White S., Forney L. Genetic diversity through the looking glass: effect of enrichment bias. Appl. Environ. Microbiol. 1997, 63:1326-1331.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 1326-1331
    • Dunbar, J.1    White, S.2    Forney, L.3
  • 18
    • 0033001947 scopus 로고    scopus 로고
    • Diversity of Pseudomonas strains isolated with King's B and Gould's S1 agar determined by repetitive extragenic palindromic polymerase chain reaction, 16S rDNA sequencing and Fourier transform infrared spectroscopy characterisation
    • Johnsen K., Nielsen P. Diversity of Pseudomonas strains isolated with King's B and Gould's S1 agar determined by repetitive extragenic palindromic polymerase chain reaction, 16S rDNA sequencing and Fourier transform infrared spectroscopy characterisation. FEMS Microbiol. Lett. 1999, 173:155-162.
    • (1999) FEMS Microbiol. Lett. , vol.173 , pp. 155-162
    • Johnsen, K.1    Nielsen, P.2
  • 19
    • 0029020201 scopus 로고
    • Characterization of diverse 2,4-dichlorophenoxyacetic acid-degradative plasmids isolated from soil by complementation
    • Top E.M., Holben W.E., Forney L.J. Characterization of diverse 2,4-dichlorophenoxyacetic acid-degradative plasmids isolated from soil by complementation. Appl. Environ. Microbiol. 1995, 61:1691-1698.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1691-1698
    • Top, E.M.1    Holben, W.E.2    Forney, L.J.3
  • 20
    • 0035020964 scopus 로고    scopus 로고
    • Enhanced degradation of phenoxyacetic acid in soil by horizontal transfer of the tfdA gene encoding a 2,4-dichlorophenoxyacetic acid dioxygenase
    • de Lipthay J.R., Barkay T., Sorensen S.J. Enhanced degradation of phenoxyacetic acid in soil by horizontal transfer of the tfdA gene encoding a 2,4-dichlorophenoxyacetic acid dioxygenase. FEMS Microbiol. Ecol. 2001, 35:75-84.
    • (2001) FEMS Microbiol. Ecol. , vol.35 , pp. 75-84
    • de Lipthay, J.R.1    Barkay, T.2    Sorensen, S.J.3
  • 21
    • 0029903958 scopus 로고    scopus 로고
    • Gene transfer of Alcaligenes eutrophus JMP134 plasmid pJP4 to indigenous soil recipients
    • DiGiovanni G.D., Neilson J.W., Pepper I.L., Sinclair N.A. Gene transfer of Alcaligenes eutrophus JMP134 plasmid pJP4 to indigenous soil recipients. Appl. Environ. Microbiol. 1996, 62:2521-2526.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2521-2526
    • DiGiovanni, G.D.1    Neilson, J.W.2    Pepper, I.L.3    Sinclair, N.A.4
  • 22
    • 0030013485 scopus 로고    scopus 로고
    • Evidence for acquisition in nature of a chromosomal 2,4-dichlorophenoxyacetic acid α-ketoglutarate dioxygenase gene by different Burkholderia spp
    • Matheson V.G., Forney L.J., Suwa W., Nakatsu C.H., Sexstone A.J., Holben W.E. Evidence for acquisition in nature of a chromosomal 2,4-dichlorophenoxyacetic acid α-ketoglutarate dioxygenase gene by different Burkholderia spp. Appl. Environ. Microbiol. 1996, 62:2457-2463.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2457-2463
    • Matheson, V.G.1    Forney, L.J.2    Suwa, W.3    Nakatsu, C.H.4    Sexstone, A.J.5    Holben, W.E.6
  • 23
    • 0034954581 scopus 로고    scopus 로고
    • Substrate specificity of chlorophenoxyalkanoic acid-degrading bacteria is not dependent upon phylogenetically related tfdA gene types
    • Smejkal C.W., Vallaeys T., Burton S.K., Lappin-Scott H.M. Substrate specificity of chlorophenoxyalkanoic acid-degrading bacteria is not dependent upon phylogenetically related tfdA gene types. Biol. Fert. Soils 2001, 33:507-513.
    • (2001) Biol. Fert. Soils , vol.33 , pp. 507-513
    • Smejkal, C.W.1    Vallaeys, T.2    Burton, S.K.3    Lappin-Scott, H.M.4
  • 24
    • 0028995655 scopus 로고
    • A review of bacterial-degradation of pesticides
    • Aislabie J., Lloyd-Jones G. A review of bacterial-degradation of pesticides. Aust. J. soil. Res. 1995, 33:925-942.
    • (1995) Aust. J. soil. Res. , vol.33 , pp. 925-942
    • Aislabie, J.1    Lloyd-Jones, G.2
  • 25
    • 28644444340 scopus 로고    scopus 로고
    • Bacterial degradation of xenobiotic compounds: evolution and distribution of novel enzyme activities
    • Janssen D.B., Dinkla I.J.T., Poelarends G.J., Terpstra P. Bacterial degradation of xenobiotic compounds: evolution and distribution of novel enzyme activities. Environ. Microbiol. 2005, 7:1868-1882.
    • (2005) Environ. Microbiol. , vol.7 , pp. 1868-1882
    • Janssen, D.B.1    Dinkla, I.J.T.2    Poelarends, G.J.3    Terpstra, P.4
  • 26
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing. In: Stackebrandt, E., Goodfellow, M. (Eds.), Nucleic Acid Techniques in Bacterial Systematics, Wiley, New York,
    • Lane, D.J., 1991. 16S/23S rRNA sequencing. In: Stackebrandt, E., Goodfellow, M. (Eds.), Nucleic Acid Techniques in Bacterial Systematics, Wiley, New York, pp. 115-175.
    • (1991) , pp. 115-175
    • Lane, D.J.,,1


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