메뉴 건너뛰기




Volumn 34, Issue 5, 2010, Pages 770-781

Global sensitivity analysis in dynamic metabolic networks

Author keywords

DAE systems; Global sensitivity analysis; Metabolic networks

Indexed keywords

ALGEBRAIC EQUATIONS; CONCENTRATION PROFILES; DAE SYSTEMS; DYNAMIC MASS BALANCE; EXTRACELLULAR; GLOBAL SENSITIVITY ANALYSIS; INTRACELLULAR METABOLITES; KINETIC RATES; LARGE-SCALE DYNAMICS; METABOLIC NETWORK; PHOSPHOTRANSFERASE SYSTEM; SAMPLE SIZES; SENSITIVITY INDICES;

EID: 77950368645     PISSN: 00981354     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.compchemeng.2010.01.006     Document Type: Article
Times cited : (17)

References (43)
  • 1
    • 0025895183 scopus 로고
    • Toward a science of metabolic engineering
    • Bailey J.E. Toward a science of metabolic engineering. Science 252 (1991) 1668-1675
    • (1991) Science , vol.252 , pp. 1668-1675
    • Bailey, J.E.1
  • 3
    • 0004003433 scopus 로고    scopus 로고
    • The numerical solution of initial value problems in differential-algebraic equations
    • Elsevier Science Publishing Co.
    • Brenan K.E., Campbell S.L., and Petzold L. The numerical solution of initial value problems in differential-algebraic equations. SIAM Classics Series. 2nd ed. (1996), Elsevier Science Publishing Co.
    • (1996) SIAM Classics Series. 2nd ed.
    • Brenan, K.E.1    Campbell, S.L.2    Petzold, L.3
  • 4
    • 0035812464 scopus 로고    scopus 로고
    • Probing the performance limits of the Escherichia coli metabolic network subject to gene additions or deletions
    • Burgard A.P., and Maranas C.D. Probing the performance limits of the Escherichia coli metabolic network subject to gene additions or deletions. Biotechnology and Bioengineering 74 (2001) 364-375
    • (2001) Biotechnology and Bioengineering , vol.74 , pp. 364-375
    • Burgard, A.P.1    Maranas, C.D.2
  • 9
    • 79952291722 scopus 로고    scopus 로고
    • Global sensitivity analysis: Estimation of sensitivity indexes in metabolic network dynamic models
    • November 16-21, 2008, Philadelphia, USA
    • Di Maggio J., Diaz Ricci J.C., and Diaz M.S. Global sensitivity analysis: Estimation of sensitivity indexes in metabolic network dynamic models. AIChE annual meeting. November 16-21, 2008, Philadelphia, USA (2008)
    • (2008) AIChE annual meeting
    • Di Maggio, J.1    Diaz Ricci, J.C.2    Diaz, M.S.3
  • 12
    • 0029935382 scopus 로고    scopus 로고
    • Influence of phosphoenolpyruvate on the dynamic behavior of phosphofructokinase of Escherichia coli
    • Diaz Ricci J.C. Influence of phosphoenolpyruvate on the dynamic behavior of phosphofructokinase of Escherichia coli. Journal of Theoretical Biology 178 (1996) 145-150
    • (1996) Journal of Theoretical Biology , vol.178 , pp. 145-150
    • Diaz Ricci, J.C.1
  • 13
    • 0034728781 scopus 로고    scopus 로고
    • ADP modulates the dynamic behavior of the glycolytic pathway of Escherichia coli
    • Diaz Ricci J.C. ADP modulates the dynamic behavior of the glycolytic pathway of Escherichia coli. Biochemical and Biophysical Research Communications 271 (2000) 244-249
    • (2000) Biochemical and Biophysical Research Communications , vol.271 , pp. 244-249
    • Diaz Ricci, J.C.1
  • 14
    • 0026191130 scopus 로고
    • In vivo NMR analysis of the influence of pyruvate decarboxylase and alcohol dehydrogenase of Zymomonas mobilis on the anaerobic metabolism of Escherichia coli
    • Diaz Ricci J.C., Hitzmann B., and Bailey J.E. In vivo NMR analysis of the influence of pyruvate decarboxylase and alcohol dehydrogenase of Zymomonas mobilis on the anaerobic metabolism of Escherichia coli. Biotechnology Progress 7 (1991) 305-310
    • (1991) Biotechnology Progress , vol.7 , pp. 305-310
    • Diaz Ricci, J.C.1    Hitzmann, B.2    Bailey, J.E.3
  • 15
    • 0017011515 scopus 로고
    • Formulation of structured growth models
    • Fredrickson A.G. Formulation of structured growth models. Biotechnology and Bioengineering 18 10 (1976) 1481-1486
    • (1976) Biotechnology and Bioengineering , vol.18 , Issue.10 , pp. 1481-1486
    • Fredrickson, A.G.1
  • 16
    • 15744367731 scopus 로고    scopus 로고
    • Closing the loop between feasible flux scenario identification for construct evaluation and resolution of realized fluxes via NMR
    • Ghosh S., Zhu T., Grossmann I.E., Ataai M.M., and Domach M.M. Closing the loop between feasible flux scenario identification for construct evaluation and resolution of realized fluxes via NMR. Computers & Chemical Engineering 29 3 (2005) 459-466
    • (2005) Computers & Chemical Engineering , vol.29 , Issue.3 , pp. 459-466
    • Ghosh, S.1    Zhu, T.2    Grossmann, I.E.3    Ataai, M.M.4    Domach, M.M.5
  • 17
    • 77950367646 scopus 로고    scopus 로고
    • g-PROMS
    • g-PROMS, http://www.psenterprise.com.
  • 18
    • 0030121081 scopus 로고    scopus 로고
    • Importance measures in global sensitivity analysis of nonlinear models
    • Homma T., and Saltelli A. Importance measures in global sensitivity analysis of nonlinear models. Reliability Engineering & System Safety 52 (1996) 1-17
    • (1996) Reliability Engineering & System Safety , vol.52 , pp. 1-17
    • Homma, T.1    Saltelli, A.2
  • 19
    • 0001509662 scopus 로고
    • Sensitivity analysis of partial differential equations with application to reaction and diffusion processes
    • Koda M., Dogru A.H., and Seinfeld J.H. Sensitivity analysis of partial differential equations with application to reaction and diffusion processes. Journal of Computational Physics 30 (1979) 259-282
    • (1979) Journal of Computational Physics , vol.30 , pp. 259-282
    • Koda, M.1    Dogru, A.H.2    Seinfeld, J.H.3
  • 22
    • 0034661295 scopus 로고    scopus 로고
    • Recursive MILP model for finding all the alternate optima in LP models for metabolic networks
    • Lee S., Palakornkule C., Domach M.M., and Grossmann I.E. Recursive MILP model for finding all the alternate optima in LP models for metabolic networks. Computers & Chemical Engineering 24 2-7 (2000) 711-716
    • (2000) Computers & Chemical Engineering , vol.24 , Issue.2-7 , pp. 711-716
    • Lee, S.1    Palakornkule, C.2    Domach, M.M.3    Grossmann, I.E.4
  • 23
    • 0022223737 scopus 로고
    • A dynamic model of a closed ecosystem: Development and global sensitivity analysis
    • Liepmann D., and Stephanopoulos G. A dynamic model of a closed ecosystem: Development and global sensitivity analysis. Ecological Modelling 30 (1985) 13-30
    • (1985) Ecological Modelling , vol.30 , pp. 13-30
    • Liepmann, D.1    Stephanopoulos, G.2
  • 24
  • 25
    • 0025405421 scopus 로고
    • Simple constrained optimization view of acetate overflow in E. coli
    • Majewski R.A., and Domach M.M. Simple constrained optimization view of acetate overflow in E. coli. Biotechnology and Bioengineering 35 (1990) 732-738
    • (1990) Biotechnology and Bioengineering , vol.35 , pp. 732-738
    • Majewski, R.A.1    Domach, M.M.2
  • 26
    • 0031214207 scopus 로고    scopus 로고
    • Dynamic sensitivity analysis for metabolic systems
    • Mauch K., Arnold S., and Reuss M. Dynamic sensitivity analysis for metabolic systems. Chemical Engineering Science 52 15 (1997) 2589-2598
    • (1997) Chemical Engineering Science , vol.52 , Issue.15 , pp. 2589-2598
    • Mauch, K.1    Arnold, S.2    Reuss, M.3
  • 27
    • 0019926821 scopus 로고
    • Global sensitivity analysis-A computational implementation of the Fourier Amplitude Sensitivity Test (FAST)
    • McRae G.J., Tilden J.W., and Seinfeld J.H. Global sensitivity analysis-A computational implementation of the Fourier Amplitude Sensitivity Test (FAST). Computers & Chemical Engineering 6 (1982) 15
    • (1982) Computers & Chemical Engineering , vol.6 , pp. 15
    • McRae, G.J.1    Tilden, J.W.2    Seinfeld, J.H.3
  • 28
    • 84952096573 scopus 로고
    • Factorial sampling plans for preliminary computational experiments
    • Morris M.D. Factorial sampling plans for preliminary computational experiments. Technometrics 33 (1991) 161-174
    • (1991) Technometrics , vol.33 , pp. 161-174
    • Morris, M.D.1
  • 29
    • 15744374803 scopus 로고    scopus 로고
    • A cybernetic modeling framework for analysis of metabolic systems
    • Namjoshi A.A., and Ramkrishna D. A cybernetic modeling framework for analysis of metabolic systems. Computers & Chemical Engineering 29 3 (2005) 487-498
    • (2005) Computers & Chemical Engineering , vol.29 , Issue.3 , pp. 487-498
    • Namjoshi, A.A.1    Ramkrishna, D.2
  • 31
    • 13744250483 scopus 로고    scopus 로고
    • A comparison between the uncertainties in model parameters and in forcing functions: Its application to a 3D water-quality model
    • Pastres R., and Ciavatta S. A comparison between the uncertainties in model parameters and in forcing functions: Its application to a 3D water-quality model. Environmental Modelling & Software 20 (2005) 981-989
    • (2005) Environmental Modelling & Software , vol.20 , pp. 981-989
    • Pastres, R.1    Ciavatta, S.2
  • 32
    • 33845292612 scopus 로고    scopus 로고
    • Parameter estimation in metabolic flux balance models for batch fermentation-formulation & solution using differential variational inequalities
    • Raghunathan A.U., Pérez-Correa J.R., Agosin E., and Biegler L.T. Parameter estimation in metabolic flux balance models for batch fermentation-formulation & solution using differential variational inequalities. Annals of Operations Research 148 1 (2006) 251-270
    • (2006) Annals of Operations Research , vol.148 , Issue.1 , pp. 251-270
    • Raghunathan, A.U.1    Pérez-Correa, J.R.2    Agosin, E.3    Biegler, L.T.4
  • 33
    • 0343907200 scopus 로고    scopus 로고
    • In vivo analysis of metabolic dynamics in Sccharomyces cerevisiae. II. Mathematical model
    • Rizzi M., Baltes M., Theobald U., and Reuss M. In vivo analysis of metabolic dynamics in Sccharomyces cerevisiae. II. Mathematical model. Biotechnology and Bioengineering 55 4 (1997) 592-607
    • (1997) Biotechnology and Bioengineering , vol.55 , Issue.4 , pp. 592-607
    • Rizzi, M.1    Baltes, M.2    Theobald, U.3    Reuss, M.4
  • 34
    • 0029509837 scopus 로고
    • About the use of rank transformation in sensitivity analysis of model output
    • Saltelli A., and Sobol' I.M. About the use of rank transformation in sensitivity analysis of model output. Reliability Engineering & System Safety 50 (1995) 225-239
    • (1995) Reliability Engineering & System Safety , vol.50 , pp. 225-239
    • Saltelli, A.1    Sobol', I.M.2
  • 35
    • 0036744550 scopus 로고    scopus 로고
    • On the relative importance of input factors in mathematical models: Safety assessment for nuclear waste disposal
    • Saltelli A., and Tarantola S. On the relative importance of input factors in mathematical models: Safety assessment for nuclear waste disposal. Journal of the American Statistical Association 97 459 (2002) 702-709
    • (2002) Journal of the American Statistical Association , vol.97 , Issue.459 , pp. 702-709
    • Saltelli, A.1    Tarantola, S.2
  • 37
    • 0033079533 scopus 로고    scopus 로고
    • Quantitative model-independent method for global sensitivity analysis of model output
    • Saltelli A., Tarantola S., and Chan K. Quantitative model-independent method for global sensitivity analysis of model output. Technometrics 41 1 (1999) 39-56
    • (1999) Technometrics , vol.41 , Issue.1 , pp. 39-56
    • Saltelli, A.1    Tarantola, S.2    Chan, K.3
  • 38
    • 0000760143 scopus 로고
    • Sensitivity estimates for nonlinear mathematical models. Matematicheskoe Modelirovanie, 2, 112-118 in Russian, translated in English in Sobol
    • Sobol', I.M. (1990). Sensitivity estimates for nonlinear mathematical models. Matematicheskoe Modelirovanie, 2, 112-118 in Russian, translated in English in Sobol' (1993). Mathematical Modelling and Computational Experiment, 1, 407-414.
    • (1990) Mathematical Modelling and Computational Experiment , vol.1 , pp. 407-414
    • Sobol', I.M.1
  • 39
    • 0034926426 scopus 로고    scopus 로고
    • Global sensitivity indices for nonlinear mathematical models and their Monte Carlo estimates
    • Sobol' I.M. Global sensitivity indices for nonlinear mathematical models and their Monte Carlo estimates. Mathematics and Computers in Simulation 55 (2001) 271-280
    • (2001) Mathematics and Computers in Simulation , vol.55 , pp. 271-280
    • Sobol', I.M.1
  • 40
    • 0033099773 scopus 로고    scopus 로고
    • On the use of variance reducing multipliers in Monte Carlo computations of a global sensitivity index
    • Sobol' I.M., and Levitan Y.L. On the use of variance reducing multipliers in Monte Carlo computations of a global sensitivity index. Computer Physics Communications 117 1999 (1999) 52-61
    • (1999) Computer Physics Communications , vol.117 , Issue.1999 , pp. 52-61
    • Sobol', I.M.1    Levitan, Y.L.2
  • 41
    • 0037194106 scopus 로고    scopus 로고
    • Metabolic engineering: A new frontier of chemical reaction engineering
    • Stephanopoulos G., and Stafford D. Metabolic engineering: A new frontier of chemical reaction engineering. Chemical Engineering Science 57 (2002) 2595-2602
    • (2002) Chemical Engineering Science , vol.57 , pp. 2595-2602
    • Stephanopoulos, G.1    Stafford, D.2
  • 42
    • 33845410054 scopus 로고    scopus 로고
    • Dynamic modelling and analysis of biochemical networks: Mechanism-based models and model-based experiments
    • van Riel N. Dynamic modelling and analysis of biochemical networks: Mechanism-based models and model-based experiments. Briefings in Bioinformatics 7 4 (2006) 364-374
    • (2006) Briefings in Bioinformatics , vol.7 , Issue.4 , pp. 364-374
    • van Riel, N.1
  • 43
    • 0028146781 scopus 로고
    • Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild type Escherichia coli W3110
    • Varma A., and Palsson B.O. Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild type Escherichia coli W3110. Applied and Environmental Microbiology 60 10 (1994) 3724-3731
    • (1994) Applied and Environmental Microbiology , vol.60 , Issue.10 , pp. 3724-3731
    • Varma, A.1    Palsson, B.O.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.