DNA minor groove binding of small molecules: Experimental and computational evidence

Journal of Chemical Sciences

Volumn 122, Issue 2, 2010, Pages 247-257

  Pandya, Prateek ^a   Islam, Maidul ^b   Kumar, G Suresh ^b   Jayaram, B ^c   Kumar, Surat ^a  

^a DAYALBAGH EDUCATIONAL INSTITUTE   (India)

^b INDIAN INSTITUTE OF CHEMICAL BIOLOGY   (India)

^c INDIAN INSTITUTE OF TECHNOLOGY DELHI   (India)

Author keywords

DNA binding; DNA interaction; Drug dna binding; Fluorescence; Indole derivatives; Indole DNA binding, Pu Py specificity; Non specific DNA binding

Indexed keywords

BINS; COMPLEXATION; COMPUTATIONAL METHODS; DNA; FLUORESCENCE; POLYCYCLIC AROMATIC HYDROCARBONS; QUENCHING;

CORRELATION CONSTANTS; DNA BINDING; DNA BINDING ABILITY; DNA INTERACTION; FLUORESCENCE QUENCHING; INDOLE DERIVATIVES; THEORETICAL STUDY; THERMODYNAMIC PROFILES;

DNA SEQUENCES;

EID: 77950201807     PISSN: 09743626     EISSN: 09737103     Source Type: Journal    
DOI: 10.1007/s12039-010-0029-4     Document Type: Article

References (29)

1. Singh, M P, Joseph T, Kumar S, Bathini Y and Lown J W 1992 Chem. Res. Toxicol. 5 597
2. Sartorius J and Schneider H J 1995 FEBS Lett. 374 387
3. Brun F, Toulme J J and Helene C 1975 Biochem. 14 558
4. Dimicoli J L and Helene C 1974 Biochem. 13 714
5. Helene C, Dimicoli J L and Brun F 1971a Biochemistry 10 3802
6. Helene C and Maurizot J C 1981 CRC Crit. Rev. Biochem. 10 213
7. Coll M, Aymami J, van der Marel G A, van Boom J H, Rich A and Wang A H J 1989 Biochemistry 28 310
8. Dwyer T J, Geierstanger B H, Mrksich M, Dervan P D and Wemmer D E 1993 J. Am. Chem. Soc. 115 9900
9. Klevit R E, Wemmer D and Reid B R 1986 Biochemistry 25 3296
10. Lown J W 1994 J. Mol. Rec. 7 79
11. Rajeswari M R, Montenay-Garestier T and Helene C 1987 Biochemistry 26 6825-6831 and references cited therein
12. Darnell J E 2002 Nature Rev. 2 740
13. Pandolfi P P 2001 Oncogene 20 3116
14. Baraldi P G et al 2004 Med. Res. Rev. 24 475
15. Tse W C and Boger D L 2004 Chem. Biol. 11 1607
16. Haq I 2002 Arch. Biochem. Biophys. 403 1
17. Chyan Y-J, Poeggeler B, Rawhi A O, Chain D G, Frangione B, Ghiso J and Pappolla M A 1999 J. Biol. Chem. 274 21937
18. Bach N J, Dillard R D, Draheim S E, Hermann R B and Schevitz R W 2001 Patent No. 6252084, USA
19. Jayaram B 2007 DNA Ligand Docking. Retrieved 2008, from supercomputing Facility of bioinformatics and computational biology; http://www.scfbioiitd.res. in/dock/dnadock.jsp
20. Gupta A, Gandhimathi A and Sharma P and Jayaram B 2007 14 632
21. Pearlman D A, Case D A, Caldwell J W, Ross W S, Cheathem III J E, Debolt S, Ferguson D, Seibel G and Kollman P 1995 Comp. Phys. Comm. 91 1
22. Shaikh S A and Jayaram B 2007 J. Med. Chem. 50 2240
23. Veal J M and Rill R 1989 Biochemistry 28 3243
24. Huang Q Q, Harvey C M, Paterson A R, Cass C E and Young J D 1993 J. Biol. Chem. 268 20613
25. Kumar S, Reed M, Gamper H, Gorn V, Kutyavin I, Lukhtanov E, Meyer R and Schweitzer B I 1998 Nucleic Acids Res. 26 831
26. Jeffrey G A and Saenger W 1991 Hydrogen bonding in biological structures (Berlin: Springer-Verlag)
27. Chairs J B 2006 Arch. Biochem. Biophys. 453 26
28. Islam M M, Pandya P, Choudhary S R, Kumar S and Kumar G S 2008 J. Mol. Struct. 891 489
29. Islam M M, Pandya P, Kumar S and Kumar G S 2009 J. Mol. Biosystems. 5 244