메뉴 건너뛰기




Volumn 5, Issue 2, 2010, Pages

A boolean model of the pseudomonas syringaehrp Regulon predicts a tightly regulated system

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; HRP GENE; INFORMATION PROCESSING; INFORMATION SCIENCE; PATHOTYPE; PSEUDOMONAS SYRINGAE; REGULON; SIMULATION; TYPE III SECRETION SYSTEM; BIOLOGICAL MODEL; COMPUTER SIMULATION; GENE INACTIVATION; GENE REGULATORY NETWORK; GENETICS; METABOLISM;

EID: 77950185290     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0009101     Document Type: Article
Times cited : (20)

References (31)
  • 1
    • 0033591446 scopus 로고    scopus 로고
    • Type iii secretion machines: Bacterial devices for protein delivery into host cells
    • Galán JE, Collmer A (1999) Type iii secretion machines: bacterial devices for protein delivery into host cells. Science 284: 1322-8.
    • (1999) Science , vol.284 , pp. 1322-1328
    • Galán, J.E.1    Collmer, A.2
  • 2
    • 0032562678 scopus 로고    scopus 로고
    • Supramolecular structure of the salmonella typhimurium type iii protein secretion system
    • Kubori T, Matsushima Y, Nakamura D, Uralil J, Lara-Tejero M, et al. (1998) Supramolecular structure of the salmonella typhimurium type iii protein secretion system. Science 280: 602-5.
    • (1998) Science , vol.280 , pp. 602-605
    • Kubori, T.1    Matsushima, Y.2    Nakamura, D.3    Uralil, J.4    Lara-Tejero, M.5
  • 3
    • 0034055715 scopus 로고    scopus 로고
    • Ralstonia solanacearum produces hrp-dependent pili that are required for popa secretion but not for attachment of bacteria to plant cells
    • Gijsegem FV, Vasse J, Camus JC, Marenda M, Boucher C (2000) Ralstonia solanacearum produces hrp-dependent pili that are required for popa secretion but not for attachment of bacteria to plant cells. Mol Microbiol 36: 249-60.
    • (2000) Mol Microbiol , vol.36 , pp. 249-260
    • Gijsegem, F.V.1    Vasse, J.2    Camus, J.C.3    Marenda, M.4    Boucher, C.5
  • 4
    • 0141674806 scopus 로고    scopus 로고
    • Pathogenicity and other genomic islands in plant pathogenic bacteria
    • Arnold DL, Pitman A, Jackson RW (2000) Pathogenicity and other genomic islands in plant pathogenic bacteria. Mol Plant Pathol 102: 407-420.
    • (2000) Mol Plant Pathol , vol.102 , pp. 407-420
    • Arnold, D.L.1    Pitman, A.2    Jackson, R.W.3
  • 5
    • 33750208366 scopus 로고    scopus 로고
    • Regulation of the type iii secretion system in phytopathogenic bacteria
    • Tang X, Xiao Y, Zhou JM (2006) Regulation of the type iii secretion system in phytopathogenic bacteria. Mol Plant Microbe Interact 19: 1159-66.
    • (2006) Mol Plant Microbe Interact , vol.19 , pp. 1159-1166
    • Tang, X.1    Xiao, Y.2    Zhou, J.M.3
  • 6
    • 0031783182 scopus 로고    scopus 로고
    • Negative regulation of hrp genes in pseudomonas syringae by hrpv
    • Preston G, Deng WL, Huang HC, Collmer A (1998) Negative regulation of hrp genes in pseudomonas syringae by hrpv. J Bacteriol 180: 4532-7.
    • (1998) J Bacteriol , vol.180 , pp. 4532-4537
    • Preston, G.1    Deng, W.L.2    Huang, H.C.3    Collmer, A.4
  • 7
    • 0034038637 scopus 로고    scopus 로고
    • The alternative sigma factor rpon is required for hrp activity in pseudomonas syringae pv. maculicola and acts at the level of hrpl transcription
    • Hendrickson EL, Guevera P, Ausubel FM (2000) The alternative sigma factor rpon is required for hrp activity in pseudomonas syringae pv. maculicola and acts at the level of hrpl transcription. J Bacteriol 182: 3508-16.
    • (2000) J Bacteriol , vol.182 , pp. 3508-3516
    • Hendrickson, E.L.1    Guevera, P.2    Ausubel, F.M.3
  • 8
    • 0033735499 scopus 로고    scopus 로고
    • Regulation of hrp genes and type iii protein secretion in erwinia amylovora by hrpx/hrpy, a novel two-component system, and hrps
    • Wei Z, Kim JF, Beer SV (2000) Regulation of hrp genes and type iii protein secretion in erwinia amylovora by hrpx/hrpy, a novel two-component system, and hrps. Mol Plant Microbe Interact 13: 1251-62.
    • (2000) Mol Plant Microbe Interact , vol.13 , pp. 1251-1262
    • Wei, Z.1    Kim, J.F.2    Beer, S.V.3
  • 9
    • 0034090630 scopus 로고    scopus 로고
    • The gene coding for the hrp pilus structural protein is required for type iii secretion of hrp and avr proteins in pseudomonas syringae pv. tomato
    • Wei W, Plovanich-Jones A, Deng WL, Jin QL, Collmer A, et al. (2000) The gene coding for the hrp pilus structural protein is required for type iii secretion of hrp and avr proteins in pseudomonas syringae pv. tomato. Proc Natl Acad Sci USA 97: 2247-52.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 2247-2252
    • Wei, W.1    Plovanich-Jones, A.2    Deng, W.L.3    Jin, Q.L.4    Collmer, A.5
  • 10
    • 0034836583 scopus 로고    scopus 로고
    • Enhancer-binding proteins hrpr and hrps interact to regulate hrp-encoded type iii protein secretion in pseudomonas syringae strains
    • Hutcheson SW, Bretz J, Sussan T, Jin S, Pak K (2001) Enhancer-binding proteins hrpr and hrps interact to regulate hrp-encoded type iii protein secretion in pseudomonas syringae strains. J Bacteriol 183: 5589-98.
    • (2001) J Bacteriol , vol.183 , pp. 5589-5598
    • Hutcheson, S.W.1    Bretz, J.2    Sussan, T.3    Jin, S.4    Pak, K.5
  • 11
    • 0036747469 scopus 로고    scopus 로고
    • Regulation of erwinia carotovora hrpl(ecc) (sigma-l(ecc)), which encodes an extracytoplasmic function subfamily of sigma factor required for expression of the hrp regulon
    • Chatterjee A, Cui Y, Chatterjee AK (2002) Regulation of erwinia carotovora hrpl(ecc) (sigma-l(ecc)), which encodes an extracytoplasmic function subfamily of sigma factor required for expression of the hrp regulon. Mol Plant Microbe Interact 15: 971-80.
    • (2002) Mol Plant Microbe Interact , vol.15 , pp. 971-980
    • Chatterjee, A.1    Cui, Y.2    Chatterjee, A.K.3
  • 12
    • 0037133169 scopus 로고    scopus 로고
    • Genomewide identification of pseudomonas syringae pv. tomato dc3000 promoters controlled by the hrpl alternative sigma factor
    • Fouts DE, Abramovitch RB, Alfano JR, Baldo AM, Buell CR, et al. (2002) Genomewide identification of pseudomonas syringae pv. tomato dc3000 promoters controlled by the hrpl alternative sigma factor. Proc Natl Acad Sci USA 99: 2275-80.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 2275-2280
    • Fouts, D.E.1    Abramovitch, R.B.2    Alfano, J.R.3    Baldo, A.M.4    Buell, C.R.5
  • 13
    • 0344495391 scopus 로고    scopus 로고
    • Gaca, the response regulator of a two-component system, acts as a master regulator in pseudomonas syringae pv. tomato dc3000 by controlling regulatory rna, transcriptional activators, and alternate sigma factors
    • Chatterjee A, Cui Y, Yang H, Collmer A, Alfano JR, et al. (2003) Gaca, the response regulator of a two-component system, acts as a master regulator in pseudomonas syringae pv. tomato dc3000 by controlling regulatory rna, transcriptional activators, and alternate sigma factors. Mol Plant Microbe Interact 16: 1106-17.
    • (2003) Mol Plant Microbe Interact , vol.16 , pp. 1106-1117
    • Chatterjee, A.1    Cui, Y.2    Yang, H.3    Collmer, A.4    Alfano, J.R.5
  • 14
    • 0037370947 scopus 로고    scopus 로고
    • The hrpx/hrpy two-component system activates hrps expression, the first step in the regulatory cascade controlling the hrp regulon in pantoea stewartii subsp. stewartii
    • Merighi M, Majerczak DR, Stover EH, Coplin DL (2003) The hrpx/hrpy two-component system activates hrps expression, the first step in the regulatory cascade controlling the hrp regulon in pantoea stewartii subsp. stewartii. Mol Plant Microbe Interact 16: 238-48.
    • (2003) Mol Plant Microbe Interact , vol.16 , pp. 238-248
    • Merighi, M.1    Majerczak, D.R.2    Stover, E.H.3    Coplin, D.L.4
  • 15
    • 0347457063 scopus 로고    scopus 로고
    • The regulatory cascade that activates the hrp regulon in erwinia herbicola pv. gypsophilae
    • Nizan-Koren R, Manulis S, Mor H, Iraki NM, Barash I (2003) The regulatory cascade that activates the hrp regulon in erwinia herbicola pv. gypsophilae. Mol Plant Microbe Interact 16: 249-60.
    • (2003) Mol Plant Microbe Interact , vol.16 , pp. 249-260
    • Nizan-Koren, R.1    Manulis, S.2    Mor, H.3    Iraki, N.M.4    Barash, I.5
  • 16
    • 14044275134 scopus 로고    scopus 로고
    • A high-throughput, near-saturating screen for type iii effector genes from pseudomonas syringae
    • Chang JH, Urbach JM, Law TF, Arnold LW, Hu A, et al. (2005) A high-throughput, near-saturating screen for type iii effector genes from pseudomonas syringae. Proc Natl Acad Sci USA 102: 2549-54.
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 2549-2554
    • Chang, J.H.1    Urbach, J.M.2    Law, T.F.3    Arnold, L.W.4    Hu, A.5
  • 20
    • 0017030517 scopus 로고
    • A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
    • Gillespie DT (1976) A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J Comp Phys 22: 403-434.
    • (1976) J Comp Phys , vol.22 , pp. 403-434
    • Gillespie, D.T.1
  • 21
    • 0032879544 scopus 로고    scopus 로고
    • Genetic control of flower morphogenesis in arabidopsis thaliana: A logical analysis
    • Mendoza L, Thieffry D, Alvarez-Buylla ER (1999) Genetic control of flower morphogenesis in arabidopsis thaliana: a logical analysis. Bioinformatics 15: 593-606.
    • (1999) Bioinformatics , vol.15 , pp. 593-606
    • Mendoza, L.1    Thieffry, D.2    Alvarez-Buylla, E.R.3
  • 22
    • 0037686112 scopus 로고    scopus 로고
    • The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in drosophila melanogaster
    • Albert R, Othmer HG (2003) The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in drosophila melanogaster. J Theor Biol 223: 1-18.
    • (2003) J Theor Biol , vol.223 , pp. 1-18
    • Albert, R.1    Othmer, H.G.2
  • 23
    • 0038460054 scopus 로고    scopus 로고
    • Light- and carbon-signaling pathways. modeling circuits of interactions
    • Thum KE, Shasha DE, Lejay LV, Coruzzi GM (2003) Light- and carbon-signaling pathways. modeling circuits of interactions. Plant Physiol 132: 440-52.
    • (2003) Plant Physiol , vol.132 , pp. 440-452
    • Thum, K.E.1    Shasha, D.E.2    Lejay, L.V.3    Coruzzi, G.M.4
  • 24
    • 16644389406 scopus 로고    scopus 로고
    • A gene regulatory network model for cell-fate determination during arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles
    • Espinosa-Soto C, Padilla-Longoria P, Alvarez-Buylla ER (2004) A gene regulatory network model for cell-fate determination during arabidopsis thaliana flower development that is robust and recovers experimental gene expression profiles. Plant Cell 16: 2923-39.
    • (2004) Plant Cell , vol.16 , pp. 2923-2939
    • Espinosa-Soto, C.1    Padilla-Longoria, P.2    Alvarez-Buylla, E.R.3
  • 25
    • 33947361606 scopus 로고    scopus 로고
    • Superstability of the yeast cell-cycle dynamics: Ensuring causality in the presence of biochemical stochasticity
    • Braunewell S, Bornholdt S (2007) Superstability of the yeast cell-cycle dynamics: ensuring causality in the presence of biochemical stochasticity. J Theor Biol 245: 638-43.
    • (2007) J Theor Biol , vol.245 , pp. 638-643
    • Braunewell, S.1    Bornholdt, S.2
  • 26
    • 33747874092 scopus 로고    scopus 로고
    • Dynamical analysis of a generic boolean model for the control of the mammalian cell cycle
    • Fauré A, Naldi A, Chaouiya C, Thieffry D (2006) Dynamical analysis of a generic boolean model for the control of the mammalian cell cycle. Bioinformatics 22: e124-31.
    • (2006) Bioinformatics , vol.22
    • Fauré, A.1    Naldi, A.2    Chaouiya, C.3    Thieffry, D.4
  • 29
    • 18844380444 scopus 로고    scopus 로고
    • Boolean models for genetic regulatory networks
    • Chaves M, Albert R, Sontag ED (2005) Boolean models for genetic regulatory networks. J Theor Biol 235: 431-439.
    • (2005) J Theor Biol , vol.235 , pp. 431-439
    • Chaves, M.1    Albert, R.2    Sontag, E.D.3
  • 30
  • 31
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, et al. (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13: 2498-504.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.