A SNP haplotype associated with a gene resistant to Xanthomonas axonopodis pv. malvacearum in upland cotton (Gossypium hirsutum L.)

Molecular Breeding

Volumn 25, Issue 4, 2010, Pages 593-602

  Xiao, Jinhua ^a   Fang, David D ^b   Bhatti, Muhammad ^a   Hendrix, Bill ^a   Cantrell, Roy ^a  

^a MONSANTO COMPANY   (United States)

^b SOUTHERN REGIONAL RESEARCH CENTER   (United States)

Author keywords

Bacterial blight; Bulked segregant analysis; Cotton (Gossypium spp.); DNA markers; Marker assisted selection; SNP marker haplotype; SSR markers

Indexed keywords

BACTERIA; BIOMARKERS; DIAGNOSIS; DNA SEQUENCES; GENES; PLANTS (BOTANY);

BACTERIAL BLIGHT; BULKED SEGREGANT ANALYSIS; COTTON (GOSSYPIUM SPP.); DNA MARKERS; GOSSYPIUM SPP; HAPLOTYPES; MARKER-ASSISTED SELECTION; SIMPLE SEQUENCE-REPEAT MARKERS; SINGLE NUCLEOTIDE POLYMORPHISM MARKER HAPLOTYPE; SINGLE-NUCLEOTIDE POLYMORPHISM MARKERS;

COTTON;

BACTERIA (MICROORGANISMS); GOSSYPIUM; GOSSYPIUM HIRSUTUM; XANTHOMONAS AXONOPODIS; XANTHOMONAS AXONOPODIS PV. MALVACEARUM;

EID: 77950023614     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-009-9355-y     Document Type: Article

References (29)

1. Aslam M, Jiang C, Wright R, Paterson AH (2000) Identification of molecular markers linked to leaf curl virus disease resistance in cotton. J Sci I R Iran 11: 277-280.
2. Blenda A, Scheffler J, Scheffler B, Palmer M, Lacape J-M, Yu J, Jesudurai C, Jung S, Muthukumar S, Yellambalase P, Ficklin S, Staton M, Eshelman R, Ulloa M, Saha S, Burr B, Liu S, Zhang T, Fang D, Pepper A, Kumpatla S, Jacobs J, Tomkins J, Cantrell R, Main D (2006) CMD: a cotton microsatellite database resource for Gossypium genomics. BMC Genomics 7: 132.
3. Bolek Y, El-Zik KM, Pepper AE, Bell AA, Magill CW, Thaxton PM, Reddy OUK (2005) Mapping of verticillium wilt resistance genes in cotton. Plant Sci 168: 1581-1590.
4. Brinkerhoff LA (1970) Variation in Xanthomonas malvacerum and its relation to control. Annu Rev Phytopathol 8: 85-110.
5. Brown JK (2001) Bacterial blight. In: Kirkpatrick TL, Rothrock CS (eds) Compedium of cotton diseases, 2nd edn. APS Press, St. Paul, pp 34-35.
6. Dighe ND, Robinson AF, Bell AA, Menz MA, Cantrell RG, Stelly DM (2009) Linkage mapping of resistance to reniform nematode in cotton following introgression from Gossypium longicalyx (Hutch. & Lee). Crop Sci 49: 1151-1164.
7. Eathington SR, Crosbie TM, Edwards MD, Reiter RS, Bull JK (2007) Molecular markers in a commercial breeding program. Crop Sci 47: S154-S163.
8. Fang DD, Xiao J, Canci PC, Cantrell RG (2009) A new SNP haplotype associated with blue disease resistance gene in cotton (Gossypium hirsutum L.). Theor Appl Genet (in press).
9. Guo WZ, Cai CP, Wang CB, Han ZG, Song XL, Wang K, Niu XW, Wang C, Lu KY, Shi B, Zhang TZ (2007) A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics 176: 527-541.
10. He DH, Lin ZX, Zhang XL, Nie YC, Guo XP, Zhang YX, Li W (2007) QTL mapping for economic traits based on a dense genetic map of cotton with PCR- based markers using the interspecific cross of Gossypium hirsutum x Gossypium barbadense. Euphytica 153: 181-197.
11. Hillocks RJ (1992) Bacterial blight. In: Hillocks RJ (ed) Cotton disease. CAB International, Wallingford, UK, pp 39-85.
12. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG (2007) ClustalW and ClustalX version 2. Bioinformatics 23: 2947-2948.
13. Michelmore RW, Paran I, Kessell RV (1991) Identification of markers linked to disease-resistance genes bybulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. PNAS 88: 9828-9832.
14. Nguyen TB, Giband M, Brottier P, Risterucci AM, Lacape JM (2004) Wide coverage of the tetraploid cotton genome using newly developed microsatellite markers. Theor Appl Genet 109: 167-175.
15. Niu C, Lister HE, Nguyen B, Wheeler TA, Wright RJ (2008) Resistance to Thielaviopsis basicola in the cultivated a genome cotton. Theor Appl Genet 117: 1313-1323.
16. Paterson AH, Brubaker CL, Wendel JF (1993) A rapid method for extraction of cotton (Gossypium spp.) genomic DNA suitable for RFLP or PCR analysis. Plant Mol Biol Report 11: 122-127.
17. ari) introgressed from Gossypium aridum into upland cotton (G. hirsutum). Theor Appl Genet 120: 139-150.
18. Rungis D, Llewellyn D, Dennis ES, Lyon BR (2002) Investigation of the chromosomal location of the bacterial blight resistance gene present in an Australian cotton (Gossypium hirsutum L.) cultivar. Aust J Agri Res 53: 551-560.
19. Sedcole JR (1977) Number of plants necessary to recover a trait. Crop Sci 17: 667-668.
20. Shen X, van Becelaere G, Kumar P, Davis RF, May LO, Chee P (2006) QTL mapping for resistance to root-knot nematodes in the M-120 RNR Upland cotton line (Gossypium hirsutum L.) of the Auburn 623 RNR source. Theor Appl Genet 113: 1539-1549.
21. Thaxton PM, El-Zik KM (1993) Methods for screening and identifying resistance to the bacterial blight pathogen in cotton in the MAR program. Proc Beltwide Cotton Prod Res Conf Cotton Dis Counc 53: 211-212.
22. ® 3. 0, Software for the calculation of genetic linkage maps. Plant Research International, Wageningen.
23. Verma JP (1986) Bacterial blight of cotton. CRC Press Inc, Boca Raton, FL.
24. Wallace TP, El-Zik KM (1989) Inheritance of resistance in three cotton cultivars to the HVI isolate of bacterial blight. Crop Sci 29: 1114-1119.
25. Wallace TP, El-Zik KM (1990) Quantitative analysis of resistance in cotton to three new isolates of the bacterial blight pathogen. Theor Appl Genet 79: 443-448.
26. Wang C, Ulloa M, Roberts PA (2006) Identification and mapping of microsatellite markers linked to a root-knot nematode resistance gene (rkn1) in Acala NemX cotton (Gossypium hirsutum L.). Theor Appl Genet 112: 770-777.
27. Wright RJ, Thaxton PM, El-Zik KM, Paterson AH (1998) D-subgenome bias of Xcm resistance genes in tetraploid Gossypium (cotton) suggests that polyploidy formation has created novel avenues for evolution. Genetics 149: 1987-1996.
28. Xiao J, Wu K, Fang DD, Stelly DM, Yu J, Cantrell RG (2009) New SSR markers for use in cotton (Gossypium spp.) improvement. J Cotton Sci 13: 75-157.
29. Ynturi P, Jenkins JN, McCarty JC Jr, Gutierrez OA, Saha S (2006) Association of root-knot nematode resistance genes with simple sequence repeat markers on two chromosomes in cotton. Crop Sci 46: 2670-2674.