Effects of hydrophobicity and anions on self-assembly of the peptide EMK16-II

Biopolymers

Volumn 93, Issue 4, 2010, Pages 318-329

  Zou, Dawei ^a   Tie, Zuoxiu ^a   Lu, Chunmei ^a   Qin, Meng ^a   Lu, Xiaomei ^a   Wang, Mu ^a   Wang, Wei ^a   Chen, P ^b  

^a NANJING UNIVERSITY   (China)

^b UNIVERSITY OF WATERLOO   (Canada)

Author keywords

EMK16 II; Fibril aggregation; Ionic complementary Peptide; Salt bridge

Indexed keywords

ATOMIC FORCE; CIRCULAR DICHROISM SPECTRA; CRITICAL AGGREGATION CONCENTRATION; DIVALENT CATION; ELECTROSTATIC INTERACTIONS; GEL-FILTRATION CHROMATOGRAPHY; IONIC-COMPLEMENTARY PEPTIDE; LOW CONCENTRATIONS; MONOVALENT ANIONS; NANO-FIBRILS; PEPTIDE FIBRILS; PEPTIDE SOLUTIONS; POSITIVELY CHARGED; PURE WATER; SALT BRIDGES; SELF-ASSEMBLING PROCESS;

ATOMIC FORCE MICROSCOPY; ATOMIC SPECTROSCOPY; DICHROISM; ELECTROSTATICS; GEL PERMEATION CHROMATOGRAPHY; HYDROPHOBIC CHROMATOGRAPHY; HYDROPHOBICITY; IONIZATION OF LIQUIDS; NEGATIVE IONS; PROTEIN FOLDING;

PEPTIDES;

CHLORIDE ION; CITRIC ACID; EMK 16-II PEPTIDE; MONOVALENT CATION; PEPTIDE; UNCLASSIFIED DRUG; WATER;

ARTICLE; ATOMIC FORCE MICROSCOPY; CHROMATOGRAPHY; CIRCULAR DICHROISM; ELECTRICITY; GEL FILTRATION; HYDROPHOBICITY; LIGHT SCATTERING; MOLECULAR SIZE; PROTEIN AGGREGATION; PROTEIN ASSEMBLY; PROTEIN FOLDING; PROTEIN FUNCTION;

ANIONS; CIRCULAR DICHROISM; DIMERIZATION; HYDROGEN-ION CONCENTRATION; HYDROPHOBICITY; MICROSCOPY, ATOMIC FORCE; OSMOLAR CONCENTRATION; PARTICLE SIZE; PEPTIDES; PHYSICOCHEMICAL PHENOMENA; PROTEIN BINDING; PROTEIN CONFORMATION;

EID: 77949886084     PISSN: 00063525     EISSN: 10970282     Source Type: Journal    
DOI: 10.1002/bip.21340     Document Type: Article

References (69)

1. Gazit, E.; Tendler, S. J. B. Curr Opin Chem Biol 2006, 10, 385-386.
2. Carrell, R. W.; Lomas, D. A. Lancet 1997, 350, 134-138.
3. Chamberlain, A. K.; MacPhee, C. E.; Zurdo, J.; Morozova-Roche, L. A.; Hill, H. A. O.; Dobson, C. M.; Davis, J. J. Biophys J 2000, 79, 3282-3293.
4. Kelly, J. W.; Lansbury, P. T. Amyloid 1994, 1, 186-205.
5. Pan, K. M.; Baldwin, M.; Nguyen, J.; Gasset, M.; Serban, A.; Groth, D.; Mehlhorn, I.; Huang, Z. W.; Fletterick, R. J.; Cohen, F. E.; Prusiner, S. B. Proc Natl Acad Sci USA 1993, 90, 10962-10966.
6. Fraser, P. E.; McLachlan, D. R.; Surewicz, W. K.; Mizzen, C. A.; Snow, A. D.; Nguyen, J. T.; Kirschner, D. A. J Mol Biol 1994, 244, 64-73.
7. Hong, Y. S.; Legge, R. L.; Zhang, S.; Chen, P. Biomacromolecules 2003, 4, 1433-1442.
8. Caplan, M. R.; Lauffenburger, D. A. Ind Eng Chem Res 2002, 41, 403-412.
9. Chen, P. Colloids Surf A 2005, 261, 3-24.
10. Holmes, T. C.; de Lacalle, S.; Su, X.; Liu, G. S.; Rich, A.; Zhang, S. G. Proc Natl Acad Sci USA 2000, 97, 6728-6733.
11. Nowak, A. P.; Breedveld, V.; Pakstis, L.; Ozbas, B.; Pine, D. J.; Pochan, D.; Deming, T. J. Nature 2002, 417, 424-428.
12. Zhang, S. G.; Marini, D. M.; Hwang, W.; Santoso, S. Curr Opin Chem Biol 2002, 6, 865-871.
13. Hartgerink, J. D.; Beniash, E.; Stupp, S. I. Science 2001, 294, 1684-1688.
14. Vauthey, S.; Santoso, S.; Gong, H. Y.; Watson, N.; Zhang, S. G. Proc Natl Acad Sci USA 2002, 99, 5355-5360.
15. Whaley, S. R.; English, D. S.; Hu, E. L.; Barbara, P. F.; Belcher, A. M. Nature 2000, 405, 665-668.
16. Lee, S. W.; Mao, C. B.; Flynn, C. E.; Belcher, A. M. Science 2002, 296, 892-895.
17. Zhang, S. G. Biotechnol Adv 2002, 20, 321-339.
18. Zhang, S. G.; Holmes, T.; Lockshin, C.; Rich, A. Proc Natl Acad Sci USA 1993, 90, 3334-3338.
19. Zhang, S. G.; Holmes, T. C.; Dipersio, C. M.; Hynes, R. O.; Su, X.; Rich, A. Biomaterials 1995, 16, 1385-1393.
20. Altman, M.; Lee, P.; Rich, A.; Zhang, S. G. Protein Sci 2000, 9, 1095-1105.
21. Zhang, S. G.; Lockshin, C.; Cook, R.; Rich, A. Biopolymers 1994, 34, 663-672.
22. Zhang, S. G.; Altman, M. React Funct Polym 1999, 41, 91-102.
23. Jun, S.; Hong, Y.; Imamura, H.; Ha, B. Y.; Bechhoefer, J.; Chen, P. Biophys J 2004, 87, 1249-1259.
24. Keyes-Baig, C.; Duhamel, J.; Fung, S. Y.; Bezaire, J.; Chen, P. J Am Chem Soc 2004, 126, 7522-7532.
25. Fung, S. Y.; Keyes, C.; Duhamel, J.; Chen, P. Biophys J 2003, 85, 537-548.
26. Yang, H.; Pritzker, M.; Fung, S. Y.; Sheng, Y.; Wang, W.; Chen, P. Langmuir 2006, 22, 8553-8562.
27. Hong, Y. S.; Lau, L. S.; Legge, R. L.; Chen, P. J Adhes 2004, 80, 913-931.
28. Hartgerink, J. D.; Beniash, E.; Stupp, S. I. Proc Natl Acad Sci USA 2002, 99, 5133-5138.
29. Zhao, Y.; Yokoi, H.; Tanaka, M.; Kinoshita, T.; Tan, T. W. Biomacromolecules 2008, 9, 1511-1518.
30. Chiti,F.;Webster,P.;Taddei,N.;Clark,A.;Stefani,M.;Ramponi, G.;Dobson,C.M. Proc Natl Acad Sci USA, 1999 96 3590-3594.
31. Greenfie, N.; Fasman, G. D. Biochemistry 1969, 8, 4108-4116.
32. Barrow, C. J.; Zagorski, M. G. Science 1991, 253, 179-182.
33. Aggeli, A.; Bell, M.; Carrick, L. M.; Fishwick, C. W. G.; Harding, R.; Mawer, P. J.; Radford, S. E.; Strong, A. E.; Boden, N. J Am Chem Soc 2003, 125, 9619-9628.
34. Nandi, P. K.; Robinson, D. R. J Am Chem Soc 1972, 94, 1299-1308.
35. Hong, Y.; Pritzker, M. D.; Legge, R. L.; Chen, P. Colloids Surf B 2005, 46, 152-161.
36. Zou, D. W.; Tie, Z. X.; Qin, M.; Lu, C. M.; Wang, W. Chin Phys Lett 2009, 26.
37. de la Paz, M. L.; Goldie, K.; Zurdo, J.; Lacroix, E.; Dobson, C. M.; Hoenger, A.; Serrano, L. Proc Natl Acad Sci USA 2002, 99, 16052-16057.
38. Yu, Y.; Monera, O. D.; Hodges, R. S.; Privalov, P. L. J Mol Biol 1996, 255, 367-372.
39. Caplan, M. R.; Moore, P. N.; Zhang, S. G.; Kamm, R. D.; Lauffenburger, D. A. Biomacromolecules 2000, 1, 627-631.
40. Dahlgren, P. R.; Lyubchenko, Y. L. Biochemistry 2002, 41, 11372-11378.
41. http://www.acdlabs.com.
42. Yokoi, H.; Kinoshita, T.; Zhang, S. G. Proc Natl Acad Sci USA 2005, 102, 8414-8419.
43. Yang, H.; Fung, S.-Y.; Pritzker, M.; Chen, P. PLoS One 2007, 2, e1325-e1325.
44. Chen, Y. H.; Yang, J. T.; Chau, K. H. Biochemistry 1974, 13, 3350-3359.
45. Sonnichsen, F. D.; Vaneyk, J. E.; Hodges, R. S.; Sykes, B. D. Biochemistry 1992, 31, 8790-8798.
46. Klunk, W. E.; Jacob, R. F.; Mason, R. P. Anal Biochem 1999, 266, 66-76.
47. Yang, H.; Fung, S. Y.; Pritzker, M.; Chen, P. J Am Chem Soc 2007, 129, 12200-12210.
48. Kad, N. M.; Myers, S. L.; Smith, D. P.; Smith, D. A.; Radford, S. E.; Thomson, N. H. J Mol Biol 2003, 330, 785-797.
49. Zhou, N. E.; Kay, C. M.; Hodges, R. S. J Mol Biol 1994, 237, 500-512.
50. Hoshino, M.; Yumoto, N.; Yoshikawa, S.; Goto, Y. Protein Sci 1997, 6, 1396-1404.
51. Jelesarov, I.; Durr, E.; Thomas, R. M.; Bosshard, H. R. Biochemistry 1998, 37, 7539-7550.
52. Brack, A.; Orgel, L. E. Nature 1975, 256, 383-387.
53. Johansson, A. S.; Bergquist, J.; Volbracht, C.; Paivio, A.; Leist, M.; Lannfelt, L.; Westlind-Danielsson, A. Neuroreport 2007, 18, 559-563.
54. Choi, J.; Sullards, M. C.; Olzmann, J. A.; Rees, H. D.; Weintraub, S. T.; Bostwick, D. E.; Gearing, M.; Levey, A. I.; Chin, L. S.; Li, L. J Biol Chem 2006, 281, 10816-10824.
55. Forbes, J. G.; Jin, A. J.; Wang, K. Langmuir 2001, 17, 3067-3075.
56. Goldsbury, C.; Kistler, J.; Aebi, U.; Arvinte, T.; Cooper, G. J. S. J Mol Biol 1999, 285, 33-39.
57. Ionescu-Zanetti, C.; Khurana, R.; Gillespie, J. R.; Petrick, J. S.; Trabachino, L. C.; Minert, L. J.; Carter, S. A.; Fink, A. L. Proc Natl Acad Sci USA 1999, 96, 13175-13179.
58. Gale, M.; Pollanen, M. S.; Markiewicz, P.; Goh, M. C. Biophys J 1995, 68, 2124-2128.
59. Markiewicz, P.; Goh, M. C. Langmuir 1994, 10, 5-7.
60. Vesenka, J.; Guthold, M.; Tang, C. L.; Keller, D.; Delaine, E.; Bustamante, C. Ultramicroscopy 1992, 42, 1243-1249.
61. van Raaij, M. J.; Mitraki, A.; Lavigne, G.; Cusack, S. Nature 1999, 401, 935-938.
62. Kelly, J. W.; Balch, W. E. J Cell Biol 2003, 161, 461-462.
63. Dobson, C. M. Trends Biochem Sci 1999, 24, 329-332.
64. Krebs, M. R. H.; Wilkins, D. K.; Chung, E. W.; Pitkeathly, M. C.; Chamberlain, A. K.; Zurdo, J.; Robinson, C. V.; Dobson, C. M. J Mol Biol 2000, 300, 541-549.
65. Rochet, J. C.; Lansbury, P. T. Curr Opin Struct Biol 2000, 10, 60-68.
66. Polymeropoulos, M. H. Ann Neurol 1998, 44, S63-S64.
67. Lee, S.; Eisenberg, D. Nat Struct Biol 2003, 10, 725-730.
68. Scheibel, T.; Parthasarathy, R.; Sawicki, G.; Lin, X. M.; Jaeger, H.; Lindquist, S. L. Proc Natl Acad Sci USA 2003, 100, 4527-4532.
69. Inoue, Y.; Kishimoto, A.; Hirao, J.; Yoshida, M.; Taguchi, H. J Biol Chem 2001, 276, 35227-35230.