Diversity of mitochondrial large subunit rDNA haplotypes of Glomus intraradices in two agricultural field experiments and two semi-natural grasslands

Molecular Ecology

Volumn 19, Issue 7, 2010, Pages 1497-1511

  Börstler, Boris ^a   Thiéry, Odile ^a   Sýkorová, Zuzana ^b   Berner, Alfred ^c   Redecker, Dirk ^a  

^a UNIVERSITY OF BASEL   (Switzerland)

^b INSTITUTE OF BOTANY   (Czech Republic)

^c RESEARCH INSTITUTE OF ORGANIC AGRICULTURE FIBL   (Switzerland)

Author keywords

Agriculture; Genetic differentiation; Glomus intraradices; Mutualism; Mycorrhiza; Population structure

Indexed keywords

FUNGAL DNA; MITOCHONDRIAL DNA; RIBOSOME DNA;

AGRICULTURE; ARTICLE; CLASSIFICATION; DNA SEQUENCE; ECOSYSTEM; FRANCE; GENETIC VARIABILITY; GENETICS; GLOMEROMYCOTA; HAPLOTYPE; MICROBIOLOGY; MYCORRHIZA; PHYLOGENY; PLANT ROOT; POACEAE; POPULATION GENETICS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SWITZERLAND; SYMBIOSIS;

AGRICULTURE; DNA, FUNGAL; DNA, MITOCHONDRIAL; DNA, RIBOSOMAL; ECOSYSTEM; FRANCE; GENETIC VARIATION; GENETICS, POPULATION; GLOMEROMYCOTA; HAPLOTYPES; MYCORRHIZAE; PHYLOGENY; PLANT ROOTS; POACEAE; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; SWITZERLAND; SYMBIOSIS;

ARBUSCULAR; FUNGI; GLOMUS INTRARADICES;

EID: 77949782605     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2010.04590.x     Document Type: Article

References (46)

1. Appoloni S, Lekberg Y, Tercek MT, Zabinski CA, Redecker D (2008) Molecular community analysis of arbuscular mycorrhizal fungi in roots of geothermal soils in Yellowstone National Park (USA). Microbial Ecology, 56, 649 659.
2. Berner A, Hildermann I, Fließbach A et al. (2008) Crop yield and soil fertility response to reduced tillage under organic management. Soil & Tillage Research, 101, 89 96.
3. Börstler B, Renker C, Kahmen A, Buscot F (2006) Species composition of arbuscular mycorrhizal fungi in two mountain meadows with differing management types and levels of plant biodiversity. Biology and Fertility of Soils, 42, 286 298.
4. Börstler B, Raab PA, Thiéry O, Morton JB, Redecker D (2008) Genetic diversity of the arbuscular mycorrhizal fungus Glomus intraradices as determined by mitochondrial large subunit rRNA gene sequences is considerably higher than previously expected. New Phytologist, 180, 452 465.
5. ter Braak CFJ, Smilauer P (2004) CANOCO Reference Manual and CanoDraw for Windows User's guide: Software for Canonical Community Ordination (version 4.5), Biometris, Wageningen, Netherlands Ceske Budejovice, Czech Republic.
6. Bruns TD, Kennedy PG (2009) Individuals, populations, communities and function: the growing field of ectomycorrhizal ecology. New Phytologist, 182, 12 14.
7. Carriconde F, Gardes M, Jargeat P et al. (2008) Population Evidence of Cryptic Species and Geographical Structure in the Cosmopolitan Ectomycorrhizal Fungus, Tricholoma scalpturatum. Microbial Ecology, 56, 513 524.
8. Clapp JP, Young JPW, Merryweather JW, Fitter AH (1995) Diversity of fungal symbionts in arbuscular mycorrhizas from a natural community. New Phytologist, 130, 259 265.
9. Colwell RK (2005) EstimateS: Statistical Estimation of Species Richness and Shared Species from Samples. Version 7.5. http://purl.oclc.org/estimates.
10. Croll D, Wille L, Gamper HA et al. (2008) Genetic diversity and host plant preferences revealed by simple sequence repeat and mitochondrial markers in a population of the arbuscular mycorrhizal fungus Glomus intraradices. New Phytologist, 178, 672 687.
11. Croll D, Giovannetti M, Koch AM et al. (2009) Nonself vegetative fusion and genetic exchange in the arbuscular mycorrhizal fungus Glomus intraradices. New Phytologist, 181, 924 937.
12. Doner LW, Bécard G (1991) Solubilization of gellan gels by chelation of cations. Biotechnology Techniques, 5, 25 28.
13. Geml J, Laursen GA, O'Neill K, Nusbaum HC, Taylor DL (2006) Beringian origins and cryptic speciation events in the fly agaric (Amanita muscaria). Molecular Ecology, 15, 225 239.
14. Goudet J (2005) HIERFSTAT, a package for R to compute and test hierarchical F-statistics. Molecular Ecology Notes, 5, 184 186.
15. Hall TA (1999) Bioedit: User-friendly Biological Sequence Alignment and Analysis Program for Windows 95/98/NT. North Carolina State University, Raleigh, NC, USA.
16. van der Heijden MGA, Klironomos JN, Ursic M et al. (1998) Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity. Nature, 396, 69 72.
17. Helber N, Requena N (2008) Expression of the fluorescence markers DsRed and GFP fused to a nuclear localization signal in the arbuscular mycorrhizal fungus Glomus intraradices. New Phytologist, 177, 537 548.
18. Helgason T, Daniell TJ, Husband R, Fitter AH, Young JPW (1998) Ploughing up the wood-wide web? Nature, 394, 431 431.
19. Hijri I, Sýkorová Z, Oehl F et al. (2006) Communities of arbuscular mycorrhizal fungi in arable soils are not necessarily low in diversity. Molecular Ecology, 15, 2277 2289.
20. Hovmøller MS, Yahyaoui AH, Milus EA, Justesen AF (2008) Rapid global spread of two aggressive strains of a wheat rust fungus. Molecular Ecology, 17, 3818 3826.
21. Jansa J, Mozafar A, Anken T et al. (2002) Diversity and structure of AMF communities as affected by tillage in a temperate soil. Mycorrhiza, 12, 225 234.
22. Jansa J, Mozafar A, Kuhn G et al. (2003) Soil tillage affects the community structure of mycorrhizal fungi in maize roots. Ecological Applications, 13, 1164 1176.
23. Koch AM, Kuhn G, Fontanillas P et al. (2004) High genetic variability and low local diversity in a population of arbuscular mycorrhizal fungi. Proceedings of the National Academy of Sciences, USA, 101, 2369 2374.
24. Koch AM, Croll D, Sanders IR (2006) Genetic variability in a population of arbuscular mycorrhizal fungi causes variation in plant growth. Ecology Letters, 9, 103 110.
25. Kretzer AM, Dunham S, Molina R, Spatafora JW (2005) Patterns of vegetative growth and gene flow in Rhizopogon vinicolor and R. vesiculosus (Boletales, Basidiomycota). Molecular Ecology, 14, 2259 2268.
26. Lee J, Young JPW (2009) The mitochondrial genome sequence of the arbuscular mycorrhizal fungus Glomus intraradices isolate 494 and implications for the phylogenetic placement of Glomus. New Phytologist, 183, 200 211.
27. Martin F, Gianinazzi-Pearson V, Hijri M et al. (2008) The long hard road to a completed Glomus intraradices genome. New Phytologist, 180, 747 750.
28. Mathimaran N, Falquet L, Ineichen K et al. (2008a) Microsatellites for disentangling underground networks: strain-specific identification of Glomus intraradices, an arbuscular mycorrhizal fungus. Fungal Genetics and Biology, 45, 812 817.
29. Mathimaran N, Falquet L, Ineichen K et al. (2008b) Unexpected vagaries of microsatellite loci in Glomus intraradices: length polymorphisms are rarely caused by variation in repeat number only. New Phytologist, 180, 568 570.
30. Munkvold L, Kjøller R, Vestberg M, Rosendahl S, Jakobsen I (2004) High functional diversity within species of arbuscular mycorrhizal fungi. New Phytologist, 164, 357 364.
31. Oehl F, Sieverding E, Ineichen K et al. (2003) Impact of land use intensity on the species diversity of arbuscular mycorrhizal fungi in agroecosystems of Central Europe. Applied and Environmental Microbiology, 69, 2816 2824.
32. Posada D (2004) Modeltest 3.5. Facultad de Biologia, Universidad de Vigo, Vigo, Spain.
33. Raab PA, Brennwald A, Redecker D (2005) Mitochondrial large ribosomal subunit sequences are homogeneous within isolates of Glomus (arbuscular mycorrhizal fungi, Glomeromycota). Mycological Research, 109, 1315 1322.
34. Redecker D, Thierfelder H, Walker C, Werner D (1997) Restriction analysis of PCR-amplified internal transcribed spacers of ribosomal DNA as a tool for species identification in different genera of the order Glomales. Applied and Environmental Microbiology, 63, 1756 1761.
35. Rosenberg MS (2001) PASSAGE. Pattern Analysis, Spatial Statistics, and Geographic Exegesis. Version 1.1.3.4. Department of Biology, Arizona State University, Temper.
36. Rosendahl S (2008) Communities, populations and individuals of arbuscular mycorrhizal fungi. New Phytologist, 178, 253 266.
37. Rosendahl S, Matzen HB (2008) Genetic structure of arbuscular mycorrhizal populations in fallow and cultivated soils. New Phytologist, 179, 1154 1161.
38. Rosendahl S, McGee P, Morton JB (2009) Lack of global population genetic differentiation in the arbuscular mycorrhizal fungus Glomus mosseae suggests a recent range expansion which may have coincided with the spread of agriculture. Molecular Ecology, 18, 4316 4329.
39. Sanders IR, Alt M, Groppe K, Boller T, Wiemken A (1995) Identification of ribosomal DNA polymorphisms among and within spores of the Glomales: application to studies on the genetic diversity of arbuscular mycorrhizal fungal communities. New Phytologist, 130, 419 427.
40. Schüßler A, Schwarzott D, Walker C (2001) A new fungal phylum, the Glomeromycota: phylogeny and evolution. Mycological Research, 105, 1413 1421.
41. Smith SE, Read DJ (2008) Mycorrhizal Symbiosis, 3rd edn. Academic Press, London.
42. Stockinger H, Walker C, Schüßler A (2009) 'Glomus intraradices DAOM197198', a model fungus in arbuscular mycorrhiza research, is not Glomus intraradices. New Phytologist, 183, 1176 1187.
43. Stukenbrock EH, Rosendahl S (2005) Clonal diversity and population genetic structure of arbuscular mycorrhizal fungi (Glomus spp.) studied by multilocus genotyping of single spores. Molecular Ecology, 14, 743 752.
44. Swofford DL (2001) PAUP*. Phylogenetic Analysis Using Parsimony (*and other methods). Sinauer Associates, Sunderland, MA.
45. Sýkorová Z, Ineichen K, Wiemken A, Redecker D (2007a) The cultivation bias: different communities of arbuscular mycorrhizal fungi detected in roots from the field, from bait plants transplanted to the field, and from a greenhouse trap experiment. Mycorrhiza, 18, 1 14.
46. Sýkorová Z, Wiemken A, Redecker D (2007b) Cooccurring Gentiana verna and Gentiana acaulis and their neighboring plants in two Swiss upper montane meadows harbor distinct arbuscular mycorrhizal fungal communities. Applied and Environmental Microbiology, 73, 5426 5434.