CHIC - Converting hamburgers into cows

e-Science 2009 - 5th IEEE International Conference on e-Science

Volumn , Issue , 2009, Pages 337-343

  Townsend, Joseph A ^a   Downing, Jim ^a   Murray Rust, Peter ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

Conversion; SAF; Semantics; Workflow; XML

Indexed keywords

CHEMICAL MARKUP LANGUAGES; CONVERSION; DOCUMENT FORMATS; EMBEDDED DOMAINS; RESOURCE DESCRIPTION FORMATS; SAF; SCIENTIFIC DOCUMENTS; STAND-OFF;

HYPERTEXT SYSTEMS; INTERNATIONAL TRADE; MANAGEMENT; MARKUP LANGUAGES; SEMANTICS; XML;

COMPUTER HARDWARE DESCRIPTION LANGUAGES;

EID: 77949782358     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/e-Science.2009.54     Document Type: Conference Paper

References (28)

1. A J. G. Hey and A E Trefethen, "The Data Deluge: An e-Science Perspective," in Grid Computing - Making the Global Infrastructure a Reality, F Berman, G C Fox, and A J G Hey, Eds.: Wiley and Sons, 2003, ch. 36, pp. 809-824.
2. Lezan Hawizy, Nico Adams, Peter Murray-Rust, "Identification and visualisation of objects and their relationships in the scientific literature using natural language processing", IEEE Fifth International Conference on eScience 2009, in press.
3. Aaron Griffiths, "The Publication of Research Data: Researcher Attitudes and Behaviour," International Journal of Digital Curation, vol. 4, no. 1, pp. 46-56, 2009.
4. Joint Information Systems Committee. (2009, August) Grant Funding Call 07/09: Data Management Infrastructure : JISC. [Online]. http://www.jisc.ac.uk/ fundingopportunities/funding-calls/2009/05/ grant0709.aspx
5. Michael Kay. (2009, August) xml-dev - RE: [xml-dev] How we can convert pdf data into xml?. [Online]. http://lists.xml.org/archives/xml-dev/200607/ msg00509.html
6. Frank L Walker, Marie E Gallagher, and George R Thoma. (2009, August) PDF File Migration to PDF/A: Technical Considerations. [Online]. http://archive.nlm.nih.gov/pubs/ceb2007/2007020.pdf
7. International Organization for Standardization. (2009, August) ISO 19005-1:2005 - Document management - Electronic document file format for long-term preservation - Part 1: Use of PDF 1.4 (PDF/A-1). [Online]. http://www.iso.org/iso/catalogue-detail?csnumber=38920
8. Duff Johnson. (2009, August) Classic Planet PDF - Learning Centre - What is tagged PDF? [Online]. http://www.planetpdf.com/mainpage.asp?webpageid=1269
9. OASIS: Advancing the Standards for the Open Information Society. [Online]. http://www.oasis-open.org/home/index.php
10. DIaLOGIKa, Sonata-Software, Microsoft, Novell, Clever Age, Aztecsoft. (2009, July) OpenXML/ODF Translator Add-ins for Office. [Online]. http://odf-converter.sourceforge.net/index.html
11. (2009, July) Dublin Core Metadata Initiative. [Online]. http://dublincore.org/
12. MIT Libraries. (2009, August) Specifications for Thesis Preparation 2008-2009. [Online]. http://libraries.mit.edu/archives/thesis-specs/
13. I Lewin, "Using hand-crafted rules and machine learning to infer SciXML document structure," in Proceedings of the 6th UK e-science All Hands Meeting, Nottingham, 2007 [Online]. http://www.allhands.org.uk/2007/ proceedings/papers/820.pdf.
14. National Center for Biotechnology Information, U.S. National Library of Medicine. (2009, August) Journal Publishing Tag Set. [Online]. http://www.dtd.nlm.nih.gov/publishing/
15. (2009, August) HTML Tidy Project Page. [Online]. http://tidy.sourceforge. net/
16. World Wide Web Consortium. (2009, August) The W3C Markup Validation Service. [Online]. http://validator.w3.org/
17. Peter Corbett and Peter Murray-Rust, "High-Throughput Identification of Chemistry in Life Science Texts," in Lecture Notes in Computer Science II, W Huisinga et al., Eds.: Springer Berlin / Heidelberg, 2006, pp. 107-118.
18. Joseph Andrew Townsend et al., "Chemical documents: machine understanding and automated information extraction," Org. Bio. Chem., vol. 2, pp. 3294-3300, 2004.
19. K Degtyarenko et al., "ChEBI: a database and ontology for chemical entities of biological interest," Nucleic Acids Res., vol. 36, pp. D344-D350, 2008.
20. E E Bolton, Y Wang, P A Thiessen, and S H Bryant, "PubChem: Integrated Platform of Small Molecules and Biological Activities," in Annual Reports in Computational Chemistry , David Spellmeyer and Ralph Wheeler, Eds. Amsterdam, The Netherlands: Elsevier, 2008, vol. 4, ch. 12.
21. C J Rupp, Ann Copestake, Simone Teufel, and Benjamin Waldron, "Flexible Interfaces in the Application of Language Technology to an eScience Corpus," in Proceedings of the 4th UK E-Science All Hands Meeting, Nottingham, UK, 2006.
22. Benjamin Waldron and Ann Copestake, "A Standoff Annotation Interface between DELPH-IN Components," in Proceedings of the fifth workshop on NLP and XML, Trento, Italy, 2006.
23. Eric Wilde and David Lowe, Xpath, Xlink, Xpointer, and Xml: A Practical Guide to Web Hyperlinking and Transclusion. Boston, MA: Addison-Wesley Longman Publishing Co., 2002.
24. I V Filippov and M C Nicklaus, "Optical Structure Recognition Software To Recover Chemical Information: OSRA, An Open Source Solution," J. Chem. Inf. Model., vol. 49, no. 3, pp. 740-743, February 2009.
25. The Apache Software Foundation. (2009, August) Apache PDFBox - Java PDF Library. [Online]. http://www.pdfbox.org/
26. William B Cavnar and John M Trenkle, "N-gram-based text categorization," in Proceedings of Third Annual Symposium on Document Analysis and Information Retrieval, Las Vegas, Nevada, 1994, pp. 161-169.
27. Carl Lagoze. (2009, August) The oreChem Project: Integrating Chemistry Scholarship with the Semantic Web. [Online]. http://journal.webscience.org/112/ 2/websci09-submission-10.pdf
28. Nick Day, Jim Downing, Lezan Hawizy, Nico Adams and Peter Murray-Rust, " Towards Lensfield: data management, processing and semantic publication for vernacular e-science", IEEE Fifth International Conference on eScience 2009, in press.