-
1
-
-
0242317345
-
Complex controls: The role of alternative promoters in mammalian genomes
-
Landry JR, Mager DL, Wilhelm BT (2003) Complex controls: the role of alternative promoters in mammalian genomes. Trends Genet 19: 640-648.
-
(2003)
Trends Genet
, vol.19
, pp. 640-648
-
-
Landry, J.R.1
Mager, D.L.2
Wilhelm, B.T.3
-
2
-
-
41149149041
-
The functional consequences of alternative promoter use in mammalian genomes
-
Davuluri RV, Suzuki Y, Sugano S, Plass C, Huang TH (2008) The functional consequences of alternative promoter use in mammalian genomes. Trends Genet 24: 167-177.
-
(2008)
Trends Genet
, vol.24
, pp. 167-177
-
-
Davuluri, R.V.1
Suzuki, Y.2
Sugano, S.3
Plass, C.4
Huang, T.H.5
-
3
-
-
30044442791
-
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
-
Kimura K, Wakamatsu A, Suzuki Y, Ota T, Nishikawa T, et al. (2006) Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes. Genome Research 16: 55-65.
-
(2006)
Genome Research
, vol.16
, pp. 55-65
-
-
Kimura, K.1
Wakamatsu, A.2
Suzuki, Y.3
Ota, T.4
Nishikawa, T.5
-
4
-
-
33846867489
-
Characterization and predictive discovery of evolutionarily conserved mammalian alternative promoters
-
Baek D, Davis C, Ewing B, Gordon D, Green P (2007) Characterization and predictive discovery of evolutionarily conserved mammalian alternative promoters. Genome Research 17: 145-155.
-
(2007)
Genome Research
, vol.17
, pp. 145-155
-
-
Baek, D.1
Davis, C.2
Ewing, B.3
Gordon, D.4
Green, P.5
-
5
-
-
30044451918
-
Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome
-
Cooper SJ, Trinklein ND, Anton ED, Nguyen L, Myers RM (2006) Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome. Genome Res 16: 1-10.
-
(2006)
Genome Res
, vol.16
, pp. 1-10
-
-
Cooper, S.J.1
Trinklein, N.D.2
Anton, E.D.3
Nguyen, L.4
Myers, R.M.5
-
6
-
-
23844519339
-
A high-resolution map of active promoters in the human genome
-
Kim TH, Barrera LO, Zheng M, Qu C, Singer MA, et al. (2005) A high-resolution map of active promoters in the human genome. Nature 436: 876-880.
-
(2005)
Nature
, vol.436
, pp. 876-880
-
-
Kim, T.H.1
Barrera, L.O.2
Zheng, M.3
Qu, C.4
Singer, M.A.5
-
8
-
-
60549083701
-
Complex organizational structure of the genome revealed by genome-wide analysis of single and alternative promoters in Drosophila melanogaster
-
Zhu Q, Halfon MS (2009) Complex organizational structure of the genome revealed by genome-wide analysis of single and alternative promoters in Drosophila melanogaster. BMC Genomics 10: 9.
-
(2009)
BMC Genomics
, vol.10
, pp. 9
-
-
Zhu, Q.1
Halfon, M.S.2
-
9
-
-
0029936752
-
Regulation of gene expression by alternative promoters
-
Ayoubi TA, Van De Ven WJ (1996) Regulation of gene expression by alternative promoters. FASEB J 10: 453-460.
-
(1996)
FASEB J
, vol.10
, pp. 453-460
-
-
Ayoubi, T.A.1
Van De Ven, W.J.2
-
10
-
-
0020548847
-
Two promoters of different strengths control the transcription of the mouse alpha-amylase gene Amy-1a in the parotid gland and the liver
-
Schibler U, Hagenbuchle O, Wellauer PK, Pittet AC (1983) Two promoters of different strengths control the transcription of the mouse alpha-amylase gene Amy-1a in the parotid gland and the liver. Cell 33: 501-508.
-
(1983)
Cell
, vol.33
, pp. 501-508
-
-
Schibler, U.1
Hagenbuchle, O.2
Wellauer, P.K.3
Pittet, A.C.4
-
11
-
-
0141889115
-
Transcriptional control of murine CD94 gene: Differential usage of dual promoters by lymphoid cell types
-
Wilhelm BT, Landry JR, Takei F, Mager DL (2003) Transcriptional control of murine CD94 gene: differential usage of dual promoters by lymphoid cell types. J Immunol 171: 4219-4226.
-
(2003)
J Immunol
, vol.171
, pp. 4219-4226
-
-
Wilhelm, B.T.1
Landry, J.R.2
Takei, F.3
Mager, D.L.4
-
12
-
-
0036430553
-
Widely spaced alternative promoters, conserved between human and rodent, control expression of the Opitz syndrome gene MID1
-
Landry JR, Mager DL (2002) Widely spaced alternative promoters, conserved between human and rodent, control expression of the Opitz syndrome gene MID1. Genomics 80: 499-508.
-
(2002)
Genomics
, vol.80
, pp. 499-508
-
-
Landry, J.R.1
Mager, D.L.2
-
14
-
-
1542515338
-
A census of human cancer genes
-
Futreal PA, Coin L, Marshall M, Down T, Hubbard T, et al. (2004) A census of human cancer genes. Nat Rev Cancer 4: 177-183.
-
(2004)
Nat Rev Cancer
, vol.4
, pp. 177-183
-
-
Futreal, P.A.1
Coin, L.2
Marshall, M.3
Down, T.4
Hubbard, T.5
-
16
-
-
35748982114
-
AILUN: Reannotating gene expression data automatically
-
Chen R, Li L, Butte AJ (2007) AILUN: reannotating gene expression data automatically. Nat Methods 4: 879.
-
(2007)
Nat Methods
, vol.4
, pp. 879
-
-
Chen, R.1
Li, L.2
Butte, A.J.3
-
17
-
-
57649201350
-
FitSNPs: Highly differentially expressed genes are more likely to have variants associated with disease
-
Chen R, Morgan AA, Dudley J, Deshpande T, Li L, et al. (2008) FitSNPs: highly differentially expressed genes are more likely to have variants associated with disease. Genome Biol 9: R170.
-
(2008)
Genome Biol
, vol.9
-
-
Chen, R.1
Morgan, A.A.2
Dudley, J.3
Deshpande, T.4
Li, L.5
-
18
-
-
0037819447
-
Transcription regulation and animal diversity
-
Levine M, Tjian R (2003) Transcription regulation and animal diversity. Nature 424: 147-151.
-
(2003)
Nature
, vol.424
, pp. 147-151
-
-
Levine, M.1
Tjian, R.2
-
19
-
-
58149193222
-
Human Protein Reference Database-2009 update
-
Keshava Prasad TS, Goel R, Kandasamy K, Keerthikumar S, Kumar S, et al. (2009) Human Protein Reference Database-2009 update. Nucleic Acids Res 37: D767-772.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Keshava Prasad, T.S.1
Goel, R.2
Kandasamy, K.3
Keerthikumar, S.4
Kumar, S.5
-
20
-
-
34447274092
-
Studies of the regulation and function of the Gs alpha gene Gnas using gene targeting technology
-
Weinstein LS, Xie T, Zhang QH, Chen M (2007) Studies of the regulation and function of the Gs alpha gene Gnas using gene targeting technology. Pharmacol Ther 115: 271-291.
-
(2007)
Pharmacol Ther
, vol.115
, pp. 271-291
-
-
Weinstein, L.S.1
Xie, T.2
Zhang, Q.H.3
Chen, M.4
-
21
-
-
0035057062
-
Imprints of disease at GNAS1
-
Lalande M (2001) Imprints of disease at GNAS1. J Clin Invest 107: 793-794.
-
(2001)
J Clin Invest
, vol.107
, pp. 793-794
-
-
Lalande, M.1
-
22
-
-
17644372378
-
A novel STX16 deletion in autosomal dominant pseudohypoparathyroidism type Ib redefines the boundaries of a cis-acting imprinting control element of GNAS
-
Linglart A, Gensure RC, Olney RC, Juppner H, Bastepe M (2005) A novel STX16 deletion in autosomal dominant pseudohypoparathyroidism type Ib redefines the boundaries of a cis-acting imprinting control element of GNAS. Am J Hum Genet 76: 804-814.
-
(2005)
Am J Hum Genet
, vol.76
, pp. 804-814
-
-
Linglart, A.1
Gensure, R.C.2
Olney, R.C.3
Juppner, H.4
Bastepe, M.5
-
23
-
-
11244353640
-
Deletion of the NESP55 differentially methylated region causes loss of maternal GNAS imprints and pseudohypoparathyroidism type Ib
-
Bastepe M, Frohlich LF, Linglart A, Abu-Zahra HS, Tojo K, et al. (2005) Deletion of the NESP55 differentially methylated region causes loss of maternal GNAS imprints and pseudohypoparathyroidism type Ib. Nat Genet 37: 25-27.
-
(2005)
Nat Genet
, vol.37
, pp. 25-27
-
-
Bastepe, M.1
Frohlich, L.F.2
Linglart, A.3
Abu-Zahra, H.S.4
Tojo, K.5
-
24
-
-
0032981395
-
The Role of Genomic Imprinting of Galpha in the Pathogenesis of Albright Hereditary Osteodystrophy
-
Weinstein LS, Yu S (1999) The Role of Genomic Imprinting of Galpha in the Pathogenesis of Albright Hereditary Osteodystrophy. Trends Endocrinol Metab 10: 81-85.
-
(1999)
Trends Endocrinol Metab
, vol.10
, pp. 81-85
-
-
Weinstein, L.S.1
Yu, S.2
-
25
-
-
0033762171
-
A GNAS1 imprinting defect in pseudohypoparathyroidism type IB
-
Liu J, Litman D, Rosenberg MJ, Yu S, Biesecker LG, et al. (2000) A GNAS1 imprinting defect in pseudohypoparathyroidism type IB. J Clin Invest 106: 1167-1174.
-
(2000)
J Clin Invest
, vol.106
, pp. 1167-1174
-
-
Liu, J.1
Litman, D.2
Rosenberg, M.J.3
Yu, S.4
Biesecker, L.G.5
-
26
-
-
0035106246
-
Imprinting of the G(s)alpha gene GNAS1 in the pathogenesis of acromegaly
-
Hayward BE, Barlier A, Korbonits M, Grossman AB, Jacquet P, et al. (2001) Imprinting of the G(s)alpha gene GNAS1 in the pathogenesis of acromegaly. J Clin Invest 107: R31-36.
-
(2001)
J Clin Invest
, vol.107
-
-
Hayward, B.E.1
Barlier, A.2
Korbonits, M.3
Grossman, A.B.4
Jacquet, P.5
-
27
-
-
0035225898
-
Multiple controlling mechanisms of FGF1 gene expression through multiple tissue-specific promoters
-
Chiu IM, Touhalisky K, Baran C (2001) Multiple controlling mechanisms of FGF1 gene expression through multiple tissue-specific promoters. Prog Nucleic Acid Res Mol Biol 70: 155-174.
-
(2001)
Prog Nucleic Acid Res Mol Biol
, vol.70
, pp. 155-174
-
-
Chiu, I.M.1
Touhalisky, K.2
Baran, C.3
-
28
-
-
0028903124
-
Human fibroblast growth factor 1 gene expression in vascular smooth muscle cells is modulated via an alternate promoter in response to serum and phorbol ester
-
Chotani MA, Payson RA, Winkles JA, Chiu IM (1995) Human fibroblast growth factor 1 gene expression in vascular smooth muscle cells is modulated via an alternate promoter in response to serum and phorbol ester. Nucleic Acids Res 23: 434-441.
-
(1995)
Nucleic Acids Res
, vol.23
, pp. 434-441
-
-
Chotani, M.A.1
Payson, R.A.2
Winkles, J.A.3
Chiu, I.M.4
-
29
-
-
59649084032
-
Brain-specific 1B promoter of FGF1 gene facilitates the isolation of neural stem/progenitor cells with self-renewal and multipotent capacities
-
Hsu YC, Lee DC, Chen SL, Liao WC, Lin JW, et al. (2009) Brain-specific 1B promoter of FGF1 gene facilitates the isolation of neural stem/progenitor cells with self-renewal and multipotent capacities. Dev Dyn 238: 302-314.
-
(2009)
Dev Dyn
, vol.238
, pp. 302-314
-
-
Hsu, Y.C.1
Lee, D.C.2
Chen, S.L.3
Liao, W.C.4
Lin, J.W.5
-
30
-
-
0028940090
-
Functional characterization of the brain-specific FGF-1 promoter, FGF-1.B
-
Myers RL, Ray SK, Eldridge R, Chotani MA, Chiu IM (1995) Functional characterization of the brain-specific FGF-1 promoter, FGF-1.B. J Biol Chem 270: 8257-8266.
-
(1995)
J Biol Chem
, vol.270
, pp. 8257-8266
-
-
Myers, R.L.1
Ray, S.K.2
Eldridge, R.3
Chotani, M.A.4
Chiu, I.M.5
-
31
-
-
0028046606
-
A common mutation in the fibroblast growth factor receptor 1 gene in Pfeiffer syndrome
-
Muenke M, Schell U, Hehr A, Robin NH, Losken HW, et al. (1994) A common mutation in the fibroblast growth factor receptor 1 gene in Pfeiffer syndrome. Nat Genet 8: 269-274.
-
(1994)
Nat Genet
, vol.8
, pp. 269-274
-
-
Muenke, M.1
Schell, U.2
Hehr, A.3
Robin, N.H.4
Losken, H.W.5
-
32
-
-
1642421743
-
Distinct stem cell myeloproliferative/T lymphoma syndromes induced by ZNF198-FGFR1 and BCR-FGFR1 fusion genes from 8p11 translocations
-
Roumiantsev S, Krause DS, Neumann CA, Dimitri CA, Asiedu F, et al. (2004) Distinct stem cell myeloproliferative/T lymphoma syndromes induced by ZNF198-FGFR1 and BCR-FGFR1 fusion genes from 8p11 translocations. Cancer Cell 5: 287-298.
-
(2004)
Cancer Cell
, vol.5
, pp. 287-298
-
-
Roumiantsev, S.1
Krause, D.S.2
Neumann, C.A.3
Dimitri, C.A.4
Asiedu, F.5
-
33
-
-
0028009263
-
Developmentally regulated expression of two novel platelet-derived growth factor alpha-receptor transcripts in human teratocarcinoma cells
-
Mosselman S, Claesson-Welsh L, Kamphuis JS, van Zoelen EJ (1994) Developmentally regulated expression of two novel platelet-derived growth factor alpha-receptor transcripts in human teratocarcinoma cells. Cancer Res 54: 220-225.
-
(1994)
Cancer Res
, vol.54
, pp. 220-225
-
-
Mosselman, S.1
Claesson-Welsh, L.2
Kamphuis, J.S.3
van Zoelen, E.J.4
-
34
-
-
15844379152
-
Oct-4 regulates alternative platelet-derived growth factor alpha receptor gene promoter in human embryonal carcinoma cells
-
Kraft HJ, Mosselman S, Smits HA, Hohenstein P, Piek E, et al. (1996) Oct-4 regulates alternative platelet-derived growth factor alpha receptor gene promoter in human embryonal carcinoma cells. J Biol Chem 271: 12873-12878.
-
(1996)
J Biol Chem
, vol.271
, pp. 12873-12878
-
-
Kraft, H.J.1
Mosselman, S.2
Smits, H.A.3
Hohenstein, P.4
Piek, E.5
-
35
-
-
0344987881
-
A tyrosine kinase created by fusion of the PDGFRA and FIP1L1 genes as a therapeutic target of imatinib in idiopathic hypereosinophilic syndrome
-
Cools J, DeAngelo DJ, Gotlib J, Stover EH, Legare RD, et al. (2003) A tyrosine kinase created by fusion of the PDGFRA and FIP1L1 genes as a therapeutic target of imatinib in idiopathic hypereosinophilic syndrome. N Engl J Med 348: 1201-1214.
-
(2003)
N Engl J Med
, vol.348
, pp. 1201-1214
-
-
Cools, J.1
DeAngelo, D.J.2
Gotlib, J.3
Stover, E.H.4
Legare, R.D.5
-
36
-
-
0037596569
-
Discovery of a fusion kinase in EOL-1 cells and idiopathic hypereosinophilic syndrome
-
Griffin JH, Leung J, Bruner RJ, Caligiuri MA, Briesewitz R (2003) Discovery of a fusion kinase in EOL-1 cells and idiopathic hypereosinophilic syndrome. Proc Natl Acad Sci U S A 100: 7830-7835.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 7830-7835
-
-
Griffin, J.H.1
Leung, J.2
Bruner, R.J.3
Caligiuri, M.A.4
Briesewitz, R.5
-
37
-
-
0242670019
-
PDGFRA activating mutations in gastrointestinal stromal tumors
-
Heinrich MC, Corless CL, Duensing A, McGreevey L, Chen CJ, et al. (2003) PDGFRA activating mutations in gastrointestinal stromal tumors. Science 299: 708-710.
-
(2003)
Science
, vol.299
, pp. 708-710
-
-
Heinrich, M.C.1
Corless, C.L.2
Duensing, A.3
McGreevey, L.4
Chen, C.J.5
-
38
-
-
0031012850
-
Deregulation of the platelet-derived growth factor B-chain gene via fusion with collagen gene COL1A1 in dermatofibrosarcoma protuberans and giant-cell fibroblastoma
-
Simon MP, Pedeutour F, Sirvent N, Grosgeorge J, Minoletti F, et al. (1997) Deregulation of the platelet-derived growth factor B-chain gene via fusion with collagen gene COL1A1 in dermatofibrosarcoma protuberans and giant-cell fibroblastoma. Nat Genet 15: 95-98.
-
(1997)
Nat Genet
, vol.15
, pp. 95-98
-
-
Simon, M.P.1
Pedeutour, F.2
Sirvent, N.3
Grosgeorge, J.4
Minoletti, F.5
-
39
-
-
33644878173
-
MPromDb: An integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data
-
Sun H, Palaniswamy SK, Pohar TT, Jin VX, Huang TH, et al. (2006) MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data. Nucleic Acids Res 34: D98-103.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Sun, H.1
Palaniswamy, S.K.2
Pohar, T.T.3
Jin, V.X.4
Huang, T.H.5
-
40
-
-
50849114182
-
Genome-wide analysis of alternative promoters of human genes using a custom promoter tiling array
-
Singer GA, Wu J, Yan P, Plass C, Huang TH, et al. (2008) Genome-wide analysis of alternative promoters of human genes using a custom promoter tiling array. BMC Genomics 9: 349.
-
(2008)
BMC Genomics
, vol.9
, pp. 349
-
-
Singer, G.A.1
Wu, J.2
Yan, P.3
Plass, C.4
Huang, T.H.5
-
41
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang Z, Gerstein M, Snyder M (2009) RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 10: 57-63.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
42
-
-
34249098071
-
Mammalian RNA polymerase II core promoters: Insights from genome-wide studies
-
Sandelin A, Carninci P, Lenhard B, Ponjavic J, Hayashizaki Y, et al. (2007) Mammalian RNA polymerase II core promoters: insights from genome-wide studies. Nat Rev Genet 8: 424-436.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 424-436
-
-
Sandelin, A.1
Carninci, P.2
Lenhard, B.3
Ponjavic, J.4
Hayashizaki, Y.5
-
43
-
-
34548738566
-
Population genomics of human gene expression
-
Stranger BE, Nica AC, Forrest MS, Dimas A, Bird CP, et al. (2007) Population genomics of human gene expression. Nat Genet 39: 1217-1224.
-
(2007)
Nat Genet
, vol.39
, pp. 1217-1224
-
-
Stranger, B.E.1
Nica, A.C.2
Forrest, M.S.3
Dimas, A.4
Bird, C.P.5
-
44
-
-
33744475085
-
A regulatory SNP causes a human genetic disease by creating a new transcriptional promoter
-
De Gobbi M, Viprakasit V, Hughes JR, Fisher C, Buckle VJ, et al. (2006) A regulatory SNP causes a human genetic disease by creating a new transcriptional promoter. Science 312: 1215-1217.
-
(2006)
Science
, vol.312
, pp. 1215-1217
-
-
De Gobbi, M.1
Viprakasit, V.2
Hughes, J.R.3
Fisher, C.4
Buckle, V.J.5
-
45
-
-
34548805282
-
A genome-wide association study of global gene expression
-
Dixon AL, Liang L, Moffatt MF, Chen W, Heath S, et al. (2007) A genome-wide association study of global gene expression. Nature Genetics 39: 1202-1207.
-
(2007)
Nature Genetics
, vol.39
, pp. 1202-1207
-
-
Dixon, A.L.1
Liang, L.2
Moffatt, M.F.3
Chen, W.4
Heath, S.5
-
46
-
-
34548719076
-
Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes
-
Goring HHH, Curran JE, Johnson MP, Dyer TD, Charlesworth J, et al. (2007) Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes. Nature Genetics 39: 1208-1216.
-
(2007)
Nature Genetics
, vol.39
, pp. 1208-1216
-
-
Goring, H.H.H.1
Curran, J.E.2
Johnson, M.P.3
Dyer, T.D.4
Charlesworth, J.5
-
47
-
-
24144466902
-
Analysis of intronic conserved elements indicates that functional complexity might represent a major source of negative selection on non-coding sequences
-
Sironi M, Menozzi G, Comi GP, Cagliani R, Bresolin N, et al. (2005) Analysis of intronic conserved elements indicates that functional complexity might represent a major source of negative selection on non-coding sequences. Hum Mol Genet 14: 2533-2546.
-
(2005)
Hum Mol Genet
, vol.14
, pp. 2533-2546
-
-
Sironi, M.1
Menozzi, G.2
Comi, G.P.3
Cagliani, R.4
Bresolin, N.5
-
48
-
-
49149102734
-
Alternative promoters influence alternative splicing at the genomic level
-
Xin D, Hu L, Kong X (2008) Alternative promoters influence alternative splicing at the genomic level. PLoS One 3: e2377.
-
(2008)
PLoS One
, vol.3
-
-
Xin, D.1
Hu, L.2
Kong, X.3
-
49
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek A, Grun D, Poy MN, Wolf R, Rosenberg L, et al. (2005) Combinatorial microRNA target predictions. Nat Genet 37: 495-500.
-
(2005)
Nat Genet
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.N.3
Wolf, R.4
Rosenberg, L.5
-
50
-
-
56649099271
-
Analysis of regulatory network topology reveals functionally distinct classes of microRNAs
-
Yu X, Lin J, Zack DJ, Mendell JT, Qian J (2008) Analysis of regulatory network topology reveals functionally distinct classes of microRNAs. Nucleic Acids Res 36: 6494-6503.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6494-6503
-
-
Yu, X.1
Lin, J.2
Zack, D.J.3
Mendell, J.T.4
Qian, J.5
-
51
-
-
56949091982
-
MiRNAs, epigenetics, and cancer
-
Rouhi A, Mager DL, Humphries RK, Kuchenbauer F (2008) MiRNAs, epigenetics, and cancer. Mamm Genome 19: 517-525.
-
(2008)
Mamm Genome
, vol.19
, pp. 517-525
-
-
Rouhi, A.1
Mager, D.L.2
Humphries, R.K.3
Kuchenbauer, F.4
-
52
-
-
38449119517
-
Gene duplication: A drive for phenotypic diversity and cause of human disease
-
Conrad B, Antonarakis SE (2007) Gene duplication: a drive for phenotypic diversity and cause of human disease. Annu Rev Genomics Hum Genet 8: 17-35.
-
(2007)
Annu Rev Genomics Hum Genet
, vol.8
, pp. 17-35
-
-
Conrad, B.1
Antonarakis, S.E.2
-
53
-
-
41649119247
-
Protein networks in disease
-
Ideker T, Sharan R (2008) Protein networks in disease. Genome Res 18: 644-652.
-
(2008)
Genome Res
, vol.18
, pp. 644-652
-
-
Ideker, T.1
Sharan, R.2
-
54
-
-
38549094621
-
DBTSS: Database of transcription start sites, progress
-
Wakaguri H, Yamashita R, Suzuki Y, Sugano S, Nakai K (2008) DBTSS: database of transcription start sites, progress report 2008. Nucleic Acids Res 36: D97-101.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Wakaguri, H.1
Yamashita, R.2
Suzuki, Y.3
Sugano, S.4
Nakai, K.5
-
55
-
-
58149182724
-
NCBI GEO: Archive for high-throughput functional genomic data
-
Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, et al. (2009) NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res 37: D885-890.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
-
56
-
-
33846064113
-
NCBI GEO: Mining tens of millions of expression profiles-database and tools update
-
Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, et al. (2007) NCBI GEO: mining tens of millions of expression profiles-database and tools update. Nucleic Acids Res 35: D760-765.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
-
57
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher VG, Tibshirani R, Chu G (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 98: 5116-5121.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
58
-
-
52149123619
-
Core signaling pathways in human pancreatic cancers revealed by global genomic analyses
-
Jones S, Zhang XS, Parsons DW, Lin JCH, Leary RJ, et al. (2008) Core signaling pathways in human pancreatic cancers revealed by global genomic analyses. Science 321: 1801-1806.
-
(2008)
Science
, vol.321
, pp. 1801-1806
-
-
Jones, S.1
Zhang, X.S.2
Parsons, D.W.3
Lin, J.C.H.4
Leary, R.J.5
-
59
-
-
52949127312
-
An integrated genomic analysis of human glioblastoma Multiforme
-
Parsons DW, Jones S, Zhang XS, Lin JCH, Leary RJ, et al. (2008) An integrated genomic analysis of human glioblastoma Multiforme. Science 321: 1807-1812.
-
(2008)
Science
, vol.321
, pp. 1807-1812
-
-
Parsons, D.W.1
Jones, S.2
Zhang, X.S.3
Lin, J.C.H.4
Leary, R.J.5
-
60
-
-
36248962105
-
The genomic landscapes of human breast and colorectal cancers
-
Wood LD, Parsons DW, Jones S, Lin J, Sjoblom T, et al. (2007) The genomic landscapes of human breast and colorectal cancers. Science 318: 1108-1113.
-
(2007)
Science
, vol.318
, pp. 1108-1113
-
-
Wood, L.D.1
Parsons, D.W.2
Jones, S.3
Lin, J.4
Sjoblom, T.5
-
61
-
-
13444266370
-
Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders
-
Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA (2005) Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res 33: D514-517.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Hamosh, A.1
Scott, A.F.2
Amberger, J.S.3
Bocchini, C.A.4
McKusick, V.A.5
-
62
-
-
33644873213
-
The Universal Protein Resource (UniProt): An expanding universe of protein information
-
Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, et al. (2006) The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res 34: D187-191.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Wu, C.H.1
Apweiler, R.2
Bairoch, A.3
Natale, D.A.4
Barker, W.C.5
-
63
-
-
61649083057
-
BioMart-biological queries made easy
-
Smedley D, Haider S, Ballester B, Holland R, London D, et al. (2009) BioMart-biological queries made easy. BMC Genomics 10: 22.
-
(2009)
BMC Genomics
, vol.10
, pp. 22
-
-
Smedley, D.1
Haider, S.2
Ballester, B.3
Holland, R.4
London, D.5
-
64
-
-
59949096873
-
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
-
Vilella AJ, Severin J, Ureta-Vidal A, Heng L, Durbin R, et al. (2009) EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates. Genome Res 19: 327-335.
-
(2009)
Genome Res
, vol.19
, pp. 327-335
-
-
Vilella, A.J.1
Severin, J.2
Ureta-Vidal, A.3
Heng, L.4
Durbin, R.5
-
65
-
-
38349164409
-
Computing topological parameters of biological networks
-
Assenov Y, Ramirez F, Schelhorn SE, Lengauer T, Albrecht M (2008) Computing topological parameters of biological networks. Bioinformatics 24: 282-284.
-
(2008)
Bioinformatics
, vol.24
, pp. 282-284
-
-
Assenov, Y.1
Ramirez, F.2
Schelhorn, S.E.3
Lengauer, T.4
Albrecht, M.5
-
66
-
-
38449101120
-
Integration of biological networks and gene expression data using Cytoscape
-
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, et al. (2007) Integration of biological networks and gene expression data using Cytoscape. Nat Protoc 2: 2366-2382.
-
(2007)
Nat Protoc
, vol.2
, pp. 2366-2382
-
-
Cline, M.S.1
Smoot, M.2
Cerami, E.3
Kuchinsky, A.4
Landys, N.5
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