rMAT - An R/Bioconductor package for analyzing ChIP-chip experiments

Bioinformatics

Volumn 26, Issue 5, 2010, Pages 678-679

  Droit, Arnaud ^a   Cheung, Charles ^b   Gottardo, Raphael ^a  

^a CLIN RESEARCH INSTITUTE OF MONTREAL   (Canada)

^b UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR;

ARTICLE; BINDING SITE; CHEMISTRY; CHROMATIN IMMUNOPRECIPITATION; COMPUTER PROGRAM; DNA MICROARRAY; GENETIC DATABASE; GENOME; METHODOLOGY;

BINDING SITES; CHROMATIN IMMUNOPRECIPITATION; DATABASES, GENETIC; GENOME; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SOFTWARE; TRANSCRIPTION FACTORS;

EID: 77949576511     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btq023     Document Type: Article

References (6)

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3. Johnson, D.S. et al. (2006) Model-based analysis of tiling-arrays for chip-chip. Proc. Natl Acad. Sci. USA, 103, 12457-12462.
4. Judy, J.T. and Ji, H. (2009) TileProbe: modeling tiling array probe effects using publicly available data. Bioinformatics, 25, 2369-2375.
5. Lieb, J.D. et al. (2003) Genome-wide mapping of protein-DNA interactions by chromatin immunoprecipitation and DNA microarray hybridization. Methods Mol. Biol., 224, 99-109.
6. Toedling, J. et al. (2007) Ringo-an R/Bioconductor package for analyzing ChIP-chip readouts. BMC Bioinformatics, 8, 443