Identification and mapping of nucleotide binding site-leucine-rich repeat resistance gene analogs in bermudagrass

Journal of the American Society for Horticultural Science

Volumn 135, Issue 1, 2010, Pages 74-82

  Harris, Karen R ^a   Schwartz, Brian M ^b   Paterson, Andrew H ^c   Brady, Jeff A ^d  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b UNIVERSITY OF GEORGIA   (United States)

^c UNIVERSITY OF GEORGIA   (United States)

^d TEXAS A AND M UNIVERSITY   (United States)

Author keywords

Cynodon; Degenerate oligonucleotides; Disease; Non TIR NBS LRR sequences

Indexed keywords

CHLORIDOIDEAE; CYNODON (ANGIOSPERM); DROSOPHILA MELANOGASTER; MAMMALIA; PANICOIDEAE; PASPALUM; PASPALUM VAGINATUM; ZOYSIA JAPONICA;

EID: 77949562965     PISSN: 00031062     EISSN: None     Source Type: Journal    
DOI: 10.21273/jashs.135.1.74     Document Type: Article

References (57)

1. Baird, J.H., D.L. Martin, C.M. Taliaferro, M.E. Payton, and N.A. Tisserat. 1998. Bermudagrass resistance to spring dead spot caused by Ophiosphaerella herpotricha. Plant Dis. 82:771-774.
2. Bakker, E., P. Butterbach, J. Rouppe van der Voort, E. van der Vossen, J. van Vliet, J. Bakker, and A. Goverse. 2003. Genetic and physical mapping of homologues of the virus resistance gene Rx1 and the cyst nematode resistance gene Gpa2 in potato. Theor. Appl. Genet. 106:1524-1531.
3. Bethel, C.M., E.B. Sciara, J.C. Estill, J.E. Bowers, W. Hanna, and A.H. Paterson. 2006. A framework linkage map of bermudagrass (Cynodon dactylon ·transvaalensis) based on single-dose restriction fragments. Theor. Appl. Genet. 112:727-737.
4. Boutin-Ganache, I., M. Raposo, M. Raymond, and C.F. Deschepper. 2001. M13-tailed primers improve the readability and usability of microsatellite analyses performed with two different allele-sizing methods. Biotechniques 31:25-28.
5. Brodsky, L.I., A.V. Vasiliev, Y.L. Kalaidzidis, Y.S. Osipov, R.L. Tatuzov, and S.I. Feranchuk. 1992. GeneBee: The program package for biopolymer structure analysis. Dimacs 8:127-139.
6. Brotman, Y., L. Silberstein, I. Kovalski, C. Perin, C. Dogimont, M. Pitrat, J. Klingler, G.A. Thompson, and R. Perl-Treves. 2002. Resistance gene analogues in melon are linked to genetic loci conferring disease and pest resistance. Theor. Appl. Genet. 104: 1055-1063.
7. Burton, G.W. 1966. Registration of crop varieties: Tifdwarf bermuda-grass. Crop Sci. 6:93-94.
8. Casler, M.D. 2006. Perennial grasses for turf, sport and amenity uses: Evolution of form, function and fitness for human benefit. J. Agr. Sci. 144:189-203.
9. Chang, N.T., B.R. Wiseman, R.E. Lynch, and D.H. Habeck. 1985. Fall armyworm (Lepidoptera: Noctuidae) orientation and preference for selected grasses. Fla. Entomol. 68:296-303.
10. Chen, Y., L. Long, X. Lin, W. Guo, and B. Liu. 2006. Isolation and characterization of a set of disease resistance-gene analogs (RGAs) from wild rice, Zizania latifolia Griseb. I. Introgression, copy number lability, sequence change, and DNA methylation alteration in several rice-Zizania introgression lines. Genome 49:150-158.
11. Collier, S.M. and P. Moffett. 2009. NB-LRRs work a ''bait and switch'' on pathogens. Trends Plant Sci. 14:521-529
12. Crow, W.T. 2002. Nematode, where is thy sting? Golf Course Mgt. 70:103-106.
13. Deng, Z., S. Huang, P. Ling, C. Chen, C. Yu, C.A. Weber, G.A. Moore, and F.G. Gmitter. 2000. Cloning and characterization of NBS-LRR class resistance-gene candidate sequences in citrus. Theor. Appl. Genet. 101:814-822.
14. DeYoung, B.J. and R.W. Innes. 2006. Plant NBS-LRR proteins in pathogen sensing and host defense. Nat. Immunol. 7:1243-1249
15. Drummond, A.J., B. Ashton, M. Cheung, J. Heled, M. Kearse, R. Moir, S. Stones-Havas, T. Thierer, and A. Wilson. 2009. Geneious v4.5. 18 Jan. 2010. http://www.geneious.com
16. Gale, M.D. and K.M. Devos. 1998. Plant comparative genetics after 10 years. Science 282:656-659.
17. Gasteiger, E., A. Gattiker, C. Hoogland, I. Ivanyi, R.D. Appel, and A. Bairoch. 2003. ExPASy: The proteomics server for in-depth protein knowledge and analysis. Nucleic Acids Res. 31:3784-3788.
18. Giblin-Davis, R.M., J.L. Cisar, F.G. Bilz, and K.E. Williams. 1992. Host status of different bermudagrasses (Cynodon spp.) for the sting nematode, Belonolaimus longicausdatus. J. Nematol. 24:749-756.
19. Glynn, N.C., J.C. Comstock, S.G. Sood, P.M. Dang, and J.X. Chaparro. 2008. Isolation of nucleotide binding site-leucine rich repeat and kinase resistance gene analogues from sugarcane (Sac-charum spp.). Pest Manag. Sci. 64:48-56.
20. Hanna, W.W. 1986. A bermudagrass primer and the Tifton bermuda-grass. U.S. Golf Assn. Green Section Record 24:11-13
21. Hanna, W.W., S.K. Braman, and B.M. Schwartz. 2010. 'ST5', a shade-tolerant turf bermudagrass. HortScience 45:132-134
22. Harris, K.R., W.P. Wechter, and A. Levi. 2009. Isolation, sequence analysis, and linkage mapping of NBS-LRR disease resistance gene analogs in watermelon. J. Amer. Soc. Hort. Sci. 134:649-657
23. Hayashi, K. and H. Yoshida. 2009. Refunctionalization of the ancient rice blast disease resistance gene Pit by the recruitment of a retro-transposon as a promoter. Plant J. 57:413-425.
24. Hein, M.A. 1953. [Cynodon dactylon (L.) Pers.] Registration of varieties and strains of bermudagrass: II. Agron. J. 45:572-573
25. Hein, M.A. 1961. [Cynodon dactylon (L.) Pers.] Registration of varieties and strains of bermudagrass: III. Agron. J. 53:276
26. Irigoyen, M.L., Y. Loarce, A. Fominaya, and E. Ferrer. 2004. Isolation and mapping of resistance gene analogs from the Avena strigosa genome. Theor. Appl. Genet. 109:713-724.
27. Jukes, T.H. and C.R. Cantor. 1969. Evolution of protein molecules, p. 21-132. In: H.N. Munro (ed.). Mammalian protein metabolism. Academic Press, New York.
28. Kanazin, V., L.F. Marek, and R.C. Shoemaker. 1996. Resistance gene analogs are conserved and clustered in soybean. Proc. Natl. Acad. Sci. USA 93:11746-11750.
29. Karaca, M., S. Saha, A. Zipf, J. Jenkins, and D. Lang. 2002. Genetic diversity among forage bermudagrass (Cynodon spp.): Evidence from chloroplast and nuclear DNA fingerprinting. Crop Sci. 42: 2118-2127.
30. Kim, C., C.S. Jang, T.L. Kamps, J.S. Robertson, F.A. Feltus, and A.H. Paterson. 2008. Transcriptome analysis of leaf tissue from bermuda-grass (Cynodon dactylon) using a normalized cDNA library. Funct. Plant Biol. 35:585-594.
31. Kim, C., H. Tang, and A.H. Paterson. 2009. Duplication and di-vergence of grass genomes: Integrating the chloridoids. Trop. Plant Biol. 2:51-62.
32. Leister, D., A. Ballvora, F. Salamini, and C. Gebhardt. 1996. A PCR-based approach for isolating pathogen resistance genes from potato with potential for wide application in plants. Nat. Genet. 14:421-429.
33. Leister, D., J. Kurth, D.A. Laurie, M. Yano, T. Sasaki, K. Devos, A. Graner, and P. Schultze-Lefert. 1998. Rapid reorganization of resistance gene analogues in cereal genomes. Proc. Natl. Acad. Sci. USA 95:370-375.
34. McHale, L., X. Tan, P. Koehl, and R.W. Michelmore. 2006. Plant NBS-LRR proteins: Adaptable guards. Genome Biol. 7:212
35. McHughen, A. and S. Smyth. 2008. U.S. regulatory system for genetically modified [genetically modified organism (GMO), rDNA or transgenic] crop cultivars. Plant Biotechnol. J. 6:2-12
36. Meyers, B.C., A.W. Dickerman, R.W. Michelmore, S. Sivaramakrishnan, B.W. Sobral, and N.D. Young. 1999. Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant J. 20:317-332
37. National Center for Biotechnology Information. 2009. VecScreen. 12 Aug. 2009. http://www.ncbi.nlm.nih.gov/VecScreen/VecScreen.html
38. Oosumi, T., D.R. Rockhold, M.M. Maccree, K.L. Deahl, K.F. McCue, and W.R. Belknap. 2009. Gene Rbpi-bt1 from Solanum bulbocasta-num confers resistance to late blight in transgenic potatoes. Amer. J. Potato Res. 86:456-465.
39. Pratt, R.G. 2003. An excised-leaf inoculation technique for evaluating host-pathogen interactions and quantitative resistance of bermuda-grass genotypes to dematiaceous hyphomycetes. Phytopathology 93:1565-1571.
40. Radwan, O., S. Gandhi, A. Heesacker, B. Whitaker, C. Taylor, A. Plocik, R. Kesseli, A. Kozik, R.W. Michelmore, and S.J. Knapp. 2008. Genetic diversity and genomic distribution of homologs encoding NBS-LRR disease resistance proteins in sunflower. Mol. Genet. Genomics 280:111-125.
41. Redenbaugh, K. and A. McHughen. 2004. Regulatory challenges reduce opportunities for horticultural biotechnology, California Agr. 58:106. 18 Jan. 2010. http://ucce.ucdavis.edu/files/repositoryfiles/ca5802p106-69110.pdf
42. Reinert, J.A. 2009. Highlights and impacts of FY'05 projects funded by the Texas imported fire ant research and management project. 18 Jan. 2010. http://fireant.tamu.edu/research/projects/pdf/Identification%20and%20Development%20of%20grasses.pdf.
43. Reinert, J.A. and P. Busey. 2001. Host resistance to tawny mole cricket, Scapteriscus vicinus, in bermudagrass, Cynodon spp. Intl. Turfgrass Soc. Res. J. 9:793-797.
44. Sawahel, W.A. 1994. Transgenic plants: Performance, release and containment. World J. Microbiol. Biotechnol. 10:139-144
45. Shortman, S.L., S.K. Braman, R.R. Duncan, W.W. Hanna, and M.C. Engelke. 2002. Evaluation of turfgrass species and cultivars for potential resistance to twolined spittlebug (Hemiptera:Cercopidae). J. Econ. Entomol. 95:478-486.
46. Smiley, R.W., P.H. Dernoeden, and B.B. Clarke. 1992. Compendium of turfgrass diseases. 2nd ed. Amer. Phytopathol. Soc, St
47. Paul, MN. Taliaferro, CM. 1995. Diversity and vulnerability of bermuda turf-grass species. Crop Sci. 35:327-332.
48. Taliaferro, C.M. 2003. Bermudagrass (Cynodon (L.) Rich), p. 235-256. In: M.D. Casler and R.R. Duncas (eds.). Turfgrass biology, genetics, and breeding. Wiley, Hoboken, NJ.
49. Van der Vossen, E., A. Sikkema, B.L. Hekkert, J. Gros, P. Stevens, M. Muskens, D. Wouters, A. Pereira, W. Stiekema, and S. Allefs. 2003. An ancient R gene from wild potato species Solanum bulbocastanum confers broad-spectrum resistance to Phytophthora infestans in cultivated potato and tomato. Plant J. 36:867-882.
50. VanOoijen, JW.2006.Joinmap4.Softwareforthecalculationofgenetic linkage maps in experimental populations. Kyazma, Wageningen, The Netherlands.
51. Webster, T.M., C.W. Bednarz, and W.W. Hanna. 2003. Sensitivity of triploid hybrid bermudagrass cultivars and common bermudagrass to postemergence herbicides. Weed Technol. 17:509-515.
52. Webster, T.M., W. Hanna, and B.G. Mullinix. 2004. Bermudagrass (Cynodon spp.) dose-response relationships with clethodim, glufo-sinate and glyphosate. Pest Manag. Sci. 60:1237-1244.
53. White, R.H. and R. Dickens. 1984. Plant-parasitic nematode populations in bermudagrass as influenced by cultural practices. Agron. J. 76:41-43.
54. Wiecko, G. 2007. Management of tropical turfgrasses, p. 116-137. In: M. Pessarakli (ed.). Handbook of turfgrass management and phys-iology. CRC Press, Boca Raton, FL.
55. Williams, N.R. 2003. PCR-based polymorphism in bermudagrass (Cynodon spp.). MS Thesis, Univ. Florida, Gainesville.
56. Xu, Q., X. Wen, and X. Deng. 2005. Isolation of TIR and non-TIR NBS-LRR resistance gene analogues and identification of molecular markers linked to a powdery mildew resistance locus in chestnut rose (Rosa roxburghii Tratt). Theor. Appl. Genet. 111:819-830.
57. Xu, Y. and J.H. Couch. 2008. Marker-assisted selection in plant breeding: From publications to practice. Crop Sci. 48:391-407