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Volumn 4, Issue 12, 2009, Pages

Using association mapping in teosinte to investigate the function of maize selection-candidate genes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; DOMESTICATION; GENE FUNCTION; GENETIC SELECTION; GENETIC TRAIT; GENOTYPE PHENOTYPE CORRELATION; MAIZE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENETICS; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 77949510113     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0008227     Document Type: Article
Times cited : (15)

References (32)
  • 1
    • 0034809334 scopus 로고    scopus 로고
    • Statistical tests of selective neutrality in the age of genomics
    • Nielsen R (2001) Statistical tests of selective neutrality in the age of genomics. Heredity 86: 641-647.
    • (2001) Heredity , vol.86 , pp. 641-647
    • Nielsen, R.1
  • 2
    • 34447276219 scopus 로고    scopus 로고
    • Plant domestication, a unique opportunity to identify the genetic basis of adaptation
    • Ross-Ibarra J, Morrell PL, Gaut BS (2007) Plant domestication, a unique opportunity to identify the genetic basis of adaptation. Proc Natl Acad Sci 104: 8641-8648.
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 8641-8648
    • Ross-Ibarra, J.1    Morrell, P.L.2    Gaut, B.S.3
  • 3
    • 0037162474 scopus 로고    scopus 로고
    • Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication
    • Vigouroux Y, McMullen M, Hittinger CT, Houchins K, Schulz L, et al. (2002) Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. Proc Natl Acad Sci 99: 9650-9655.
    • (2002) Proc Natl Acad Sci , vol.99 , pp. 9650-9655
    • Vigouroux, Y.1    McMullen, M.2    Hittinger, C.T.3    Houchins, K.4    Schulz, L.5
  • 6
    • 33344469072 scopus 로고    scopus 로고
    • A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement
    • Yamasaki M, Tenaillon MI, Bi IV, Schroeder SG, Sanchez-Villeda H, et al. (2005) A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement. Plant Cell 17: 2859-2872.
    • (2005) Plant Cell , vol.17 , pp. 2859-2872
    • Yamasaki, M.1    Tenaillon, M.I.2    Bi, I.V.3    Schroeder, S.G.4    Sanchez-Villeda, H.5
  • 7
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • Hudson RR, Kreitman M, Aguade ́ M (1987) A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguadé, M.3
  • 8
    • 3042595170 scopus 로고    scopus 로고
    • Selection versus demography: A multilocus investigation of the domestication process in maize
    • Tenaillon MI, U'Ren J, Tenaillon O, Gaut BS (2004) Selection versus demography: A multilocus investigation of the domestication process in maize. Mol Biol Evol 21: 1214-1225.
    • (2004) Mol Biol Evol , vol.21 , pp. 1214-1225
    • Tenaillon, M.I.1    U'ren, J.2    Tenaillon, O.3    Gaut, B.S.4
  • 9
    • 0029741063 scopus 로고    scopus 로고
    • The future of genetic studies of complex human diseases
    • Risch N, Merikangas K (1996) The future of genetic studies of complex human diseases. Science 273: 1516-1517.
    • (1996) Science , vol.273 , pp. 1516-1517
    • Risch, N.1    Merikangas, K.2
  • 10
    • 33744980661 scopus 로고    scopus 로고
    • Genetic association mapping and genome organization of maize
    • Yu J Buckler ES (2006) Genetic association mapping and genome organization of maize. Curr Opin in Biotechnol 17: 155.
    • (2006) Curr Opin In Biotechnol , vol.17 , pp. 155
    • Yu, J.1    Buckler, E.S.2
  • 11
    • 31744440502 scopus 로고    scopus 로고
    • A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
    • Yu J, Pressoir G, Briggs WH, Vroh Bi I, Yamasaki M, et al. (2006) A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nat Genet 38: 203-208.
    • (2006) Nat Genet , vol.38 , pp. 203-208
    • Yu, J.1    Pressoir, G.2    Briggs, W.H.3    Vroh Bi, I.4    Yamasaki, M.5
  • 12
    • 33846466407 scopus 로고    scopus 로고
    • An Arabidopsis example of association mapping in structured samples
    • Zhao K, Aranzana MJ, Kim S, Lister C, Shindo C, et al. (2007) An Arabidopsis example of association mapping in structured samples. PLoS Genet 3: e4.
    • (2007) PLoS Genet , vol.e4 , pp. 3
    • Zhao, K.1    Aranzana, M.J.2    Kim, S.3    Lister, C.4    Shindo, C.5
  • 13
    • 37249070746 scopus 로고    scopus 로고
    • Major regulatory genes in maize contribute to standing variation in teosinte (Zea mays ssp. parviglumis)
    • Weber A, Clark RM, Vaughn L, Sánchez-Gonzalez J, Yu J, et al. (2007) Major regulatory genes in maize contribute to standing variation in teosinte (Zea mays ssp. parviglumis). Genetics 177: 2349-2359.
    • (2007) Genetics , vol.177 , pp. 2349-2359
    • Weber, A.1    Clark, R.M.2    Vaughn, L.3    Sánchez-Gonzalez, J.4    Yu, J.5
  • 14
    • 58149344006 scopus 로고    scopus 로고
    • The genetic architecture of complex traits in teosinte (Zea mays ssp. parviglumis): New evidence from association mapping
    • Weber AL, Briggs WH, Rucker J, Baltazar BM, Sánchez-Gonzalez J, et al. (2008) The genetic architecture of complex traits in teosinte (Zea mays ssp. parviglumis): New evidence from association mapping. Genetics 180: 1221-1232.
    • (2008) Genetics , vol.180 , pp. 1221-1232
    • Weber, A.L.1    Briggs, W.H.2    Rucker, J.3    Baltazar, B.M.4
  • 15
    • 0033180359 scopus 로고    scopus 로고
    • Dimerization and DNA binding of auxin response factors
    • Ulmasov T, Hagan G, Guilfoyle TJ (1999) Dimerization and DNA binding of auxin response factors. Plant J 19: 309-319.
    • (1999) Plant J , vol.19 , pp. 309-319
    • Ulmasov, T.1    Hagan, G.2    Guilfoyle, T.J.3
  • 16
    • 0030796237 scopus 로고    scopus 로고
    • ARF1, a transcription factor that binds to auxin response elements
    • Ulmasov T, Hagan G, Guilfoyle TJ (1997) ARF1, a transcription factor that binds to auxin response elements. Science 276: 1865-1868.
    • (1997) Science , vol.276 , pp. 1865-1868
    • Ulmasov, T.1    Hagan, G.2    Guilfoyle, T.J.3
  • 17
    • 0028484869 scopus 로고
    • Cloning and characterization of five cDNAs for genes differentially expressed during fruit development of kiwifruit (Actinidia deliciosa var. deliciosa)
    • Ledger SE, Gardner RC (1994) Cloning and characterization of five cDNAs for genes differentially expressed during fruit development of kiwifruit (Actinidia deliciosa var. deliciosa). Plant Mol Bio 25: 877-886.
    • (1994) Plant Mol Bio , vol.25 , pp. 877-886
    • Ledger, S.E.1    Gardner, R.C.2
  • 18
    • 0000208083 scopus 로고
    • Floral stimulus movement in Perilla and flower inhibition caused by noninduced leaves
    • King RW, Zeevaart Jan AD (1973) Floral stimulus movement in Perilla and flower inhibition caused by noninduced leaves. Plant Physiol 51: 727-738.
    • (1973) Plant Physiol , vol.51 , pp. 727-738
    • King, R.W.1    Zeevaart Jan, A.D.2
  • 19
    • 0001245229 scopus 로고
    • Promotion and inhibition of flower formation in a dayneutral plant in grafts with short-day plant and longday plant
    • Lang A, Chailakhyan MKh, Frolova IA (1977) Promotion and inhibition of flower formation in a dayneutral plant in grafts with short-day plant and longday plant. Proc Natl Acad Sci 74: 2412-2416.
    • (1977) Proc Natl Acad Sci , vol.74 , pp. 2412-2416
    • Lang, A.1    Chailakhyan, M.2    Frolova, I.A.3
  • 20
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson GA (1975) On the number of segregating sites in genetical models without recombination. Theor Popul Biol 7: 256-276.
    • (1975) Theor Popul Biol , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 21
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima F (1983) Evolutionary relationship of DNA sequences in finite populations. Genetics 105: 437-460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 22
    • 27744526218 scopus 로고    scopus 로고
    • AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana
    • Ellis CM, Nagpal P, Young JC, Hagen G, Guilfoyle TJ, et al. (2005) AUXIN RESPONSE FACTOR1 and AUXIN RESPONSE FACTOR2 regulate senescence and floral organ abscission in Arabidopsis thaliana. Development 132: 4563-4574.
    • (2005) Development , vol.132 , pp. 4563-4574
    • Ellis, C.M.1    Nagpal, P.2    Young, J.C.3    Hagen, G.4    Guilfoyle, T.J.5
  • 23
    • 17844370553 scopus 로고    scopus 로고
    • Altered expression of an ankyrin-repeat protein results in leaf abnormalities, necrotic lesions, and the elaboration of a systemic signal
    • Wirdnam C, Motoyama A, Arn-Bouldoires E, van Eeden S, Iglesieas A, et al. (2004) Altered expression of an ankyrin-repeat protein results in leaf abnormalities, necrotic lesions, and the elaboration of a systemic signal. Plant Mol Bio 56: 717-730.
    • (2004) Plant Mol Bio , vol.56 , pp. 717-730
    • Wirdnam, C.1    Motoyama, A.2    Arn-Bouldoires, E.3    van Eeden, S.4    Iglesieas, A.5
  • 24
    • 0027033951 scopus 로고
    • Expression of antisense or sense RNA of an ankyrin repeat-containing gene blocks chloroplast differentiation in Arabidopsis
    • Zhang H, Scheirer DC, Fowie WH, Goodman HM (1992) Expression of antisense or sense RNA of an ankyrin repeat-containing gene blocks chloroplast differentiation in Arabidopsis. Plant Cell 4: 1575-1588.
    • (1992) Plant Cell , vol.4 , pp. 1575-1588
    • Zhang, H.1    Scheirer, D.C.2    Fowie, W.H.3    Goodman, H.M.4
  • 25
    • 0030893329 scopus 로고    scopus 로고
    • The evolution of apical dominance in maize
    • Doebley J, Stec A, Hubbard L (1997) The evolution of apical dominance in maize. Nature 386: 485-488.
    • (1997) Nature , vol.386 , pp. 485-488
    • Doebley, J.1    Stec, A.2    Hubbard, L.3
  • 26
    • 10944265010 scopus 로고    scopus 로고
    • The genetics of maize evolution
    • Doebley J (2004) The genetics of maize evolution. Annu Rev Genet 38: 37-59.
    • (2004) Annu Rev Genet , vol.38 , pp. 37-59
    • Doebley, J.1
  • 27
    • 33646368697 scopus 로고    scopus 로고
    • A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture
    • Clark RM, Wagler TN, Quijada P, Doebley J (2006) A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture. Nat Genet 38: 594-597.
    • (2006) Nat Genet , vol.38 , pp. 594-597
    • Clark, R.M.1    Wagler, T.N.2    Quijada, P.3    Doebley, J.4
  • 30
    • 77949838386 scopus 로고    scopus 로고
    • Empirical analysis of selection screens for domestication and improvement loci in maize by extended DNA sequencing
    • Yamasaki M, Schroeder SG, Sanchez-Villeda H, Gaut BS, McMullen MD (2008) Empirical analysis of selection screens for domestication and improvement loci in maize by extended DNA sequencing. Plant Genome 1: https://www.crops.org/genome/files/c07-09-0530-mcmullen.pdf.
    • (2008) Plant Genome 1
    • Yamasaki, M.1    Schroeder, S.G.2    Sanchez-Villeda, H.3    Gaut, B.S.4    McMullen, M.D.5
  • 31
    • 34447289630 scopus 로고    scopus 로고
    • Patterns of selection and tissue-specific expression among maize domestication and crop improvement loci
    • Hufford KM, Canaran P, Ware DH, McMullen MD, Gaut BS (2007) Patterns of selection and tissue-specific expression among maize domestication and crop improvement loci. Plant Physiol 144: 1642-1653.
    • (2007) Plant Physiol , vol.144 , pp. 1642-1653
    • Hufford, K.M.1    Canaran, P.2    Ware, D.H.3    McMullen, M.D.4    Gaut, B.S.5
  • 32
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other method
    • Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
    • (2003) Bioinformatic , vol.1 , pp. 2496-2249
    • Rozas, J.1    Sanchez-Delbarrio, J.C.2    Messeguer, X.3    Rozas, R.4


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