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Volumn 4, Issue 12, 2009, Pages

How to turn a genetic circuit into a synthetic tunable oscillator, or a bistable switch

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BISTABLE SWITCH; COMPUTER SIMULATION; CONTROLLED STUDY; DYNAMICS; ELECTRICAL EQUIPMENT; GENE CONSTRUCT; GENE CONTROL; GENE REGULATORY NETWORK; GENETIC ENGINEERING; IN VIVO STUDY; INTEGRATED CIRCUIT; MATHEMATICAL MODEL; OSCILLATOR; SACCHAROMYCES CEREVISIAE; SPECIES COMPOSITION; SYSTEMS BIOLOGY; BIOLOGICAL RHYTHM; FEEDBACK SYSTEM; FUNGAL GENE; GENE EXPRESSION REGULATION; GENETICS; REGULATOR GENE; TIME;

EID: 77949502921     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0008083     Document Type: Article
Times cited : (43)

References (39)
  • 1
    • 67349231375 scopus 로고    scopus 로고
    • Systems and synthetic biology: Tackling genetic networks and complex diseases
    • Cuccato G, Della Gatta G, di Bernardo D (2009) Systems and synthetic biology: tackling genetic networks and complex diseases. Heredity 102: 527-532.
    • (2009) Heredity , vol.102 , pp. 527-532
    • Cuccato, G.1    della Gatta, G.2    di Bernardo, D.3
  • 2
    • 77954039690 scopus 로고    scopus 로고
    • A yeast synthetic network for in-vivo reverse-engineering and modelling assessment (irma) in systems and synthetic biology
    • Cantone I, Marucci L, Iorio F, Ricci MA, Belcastro V, et al. (2009) A yeast synthetic network for in-vivo reverse-engineering and modelling assessment (irma) in systems and synthetic biology. Cell 137: 171-181.
    • (2009) Cell , vol.137 , pp. 171-181
    • Cantone, I.1    Marucci, L.2    Iorio, F.3    Ricci, M.A.4    Belcastro, V.5
  • 4
    • 66149172363 scopus 로고    scopus 로고
    • Diversity-based, model-guided construction of synthetic gene networks with predicted functions
    • Ellis T, Wang X, Collins JJ (2009) Diversity-based, model-guided construction of synthetic gene networks with predicted functions. Nat Biotech 27: 465-471.
    • (2009) Nat Biotech , vol.27 , pp. 465-471
    • Ellis, T.1    Wang, X.2    Collins, J.J.3
  • 6
    • 0000542785 scopus 로고
    • Operational procedure toward the classification of chemical oscillators
    • Eiswirth M, Freund A, Ross J (1991) Operational procedure toward the classification of chemical oscillators. J Phys Chem 95: 1294-99.
    • (1991) J Phys Chem , vol.95 , pp. 1294-1299
    • Eiswirth, M.1    Freund, A.2    Ross, J.3
  • 8
    • 0003475470 scopus 로고    scopus 로고
    • An Introduction Springer-Verlag
    • Murray JD (2008) Mathematical Biology, Vol. 1: An Introduction Springer-Verlag.
    • (2008) Mathematical Biology , vol.1
    • Murray, J.D.1
  • 9
    • 39849091914 scopus 로고    scopus 로고
    • Design and Analysis of an Activator-Repressor Clock in E. Coli
    • ACC'07
    • Del Vecchio D (2007) Design and Analysis of an Activator-Repressor Clock in E. Coli. American Control Conference, 2007 ACC'07.
    • (2007) American Control Conference
    • del Vecchio, D.1
  • 10
    • 33645796471 scopus 로고    scopus 로고
    • Dynamical Principles of Two-Component Genetic Oscillators
    • Guantes R, Poyatos JF (2006) Dynamical Principles of Two-Component Genetic Oscillators. PLoS Computational Biology 2: 0188-0197.
    • (2006) PLoS Computational Biology , vol.2 , pp. 0188-0197
    • Guantes, R.1    Poyatos, J.F.2
  • 11
    • 34247590206 scopus 로고    scopus 로고
    • Dynamic patterns of gene regulation i: Simple two-gene systems
    • Widder S, Schicho J, Schuster P (2007) Dynamic patterns of gene regulation i: simple two-gene systems. Journal of theoretical biology 246: 395-419.
    • (2007) Journal of Theoretical Biology , vol.246 , pp. 395-419
    • Widder, S.1    Schicho, J.2    Schuster, P.3
  • 12
    • 0034688173 scopus 로고    scopus 로고
    • A synthetic oscillatory network of transcriptional regulators
    • Elowitz MB, Leibler S (2000) A synthetic oscillatory network of transcriptional regulators. Nature 403: 335-338.
    • (2000) Nature , vol.403 , pp. 335-338
    • Elowitz, M.B.1    Leibler, S.2
  • 13
    • 0038241770 scopus 로고    scopus 로고
    • Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in escherichia coli
    • Atkinson MR, Savageau MA, Myers JT, Ninfa AJ (2003) Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in escherichia coli. Cell 113: 597-607.
    • (2003) Cell , vol.113 , pp. 597-607
    • Atkinson, M.R.1    Savageau, M.A.2    Myers, J.T.3    Ninfa, A.J.4
  • 14
    • 18344381476 scopus 로고    scopus 로고
    • A synthetic gene- metabolic oscillator
    • Fung E, Wong W, Suen JK, Bulter T, Lee S, et al. (2005) A synthetic gene- metabolic oscillator. Nature 435: 118-122.
    • (2005) Nature , vol.435 , pp. 118-122
    • Fung, E.1    Wong, W.2    Suen, J.K.3    Bulter, T.4    Lee, S.5
  • 18
    • 0034688174 scopus 로고    scopus 로고
    • Construction of a genetic toggle switch in Escherichia coli
    • Gardner TS, Cantor CR, Collins JJ (2000) Construction of a genetic toggle switch in Escherichia coli. Nature 403: 339-342.
    • (2000) Nature , vol.403 , pp. 339-342
    • Gardner, T.S.1    Cantor, C.R.2    Collins, J.J.3
  • 22
    • 46849090495 scopus 로고    scopus 로고
    • Robust, tunable biological oscillations from interlinked positive and negative feedback loops
    • Tsai TY, Choi YS, Ma W, Pomerening JR, Tang C, et al. (2008) Robust, tunable biological oscillations from interlinked positive and negative feedback loops. Science 321: 126-129.
    • (2008) Science , vol.321 , pp. 126-129
    • Tsai, T.Y.1    Choi, Y.S.2    Ma, W.3    Pomerening, J.R.4    Tang, C.5
  • 24
    • 0030215653 scopus 로고    scopus 로고
    • Numerical stability analysis and computation of Hopf bifurcation points for delay differential equations
    • Luzyanina T, Roose D (1996) Numerical stability analysis and computation of Hopf bifurcation points for delay differential equations. J Comput Appl Math 72.
    • (1996) J Comput Appl Math , vol.72
    • Luzyanina, T.1    Roose, D.2
  • 25
    • 0034770393 scopus 로고    scopus 로고
    • Collocation methods for the computation of periodic solutions of delay differential equations
    • Engelborghs K, Luzyanina T, In t Hout K, Roose D (2000) Collocation methods for the computation of periodic solutions of delay differential equations. SIAM J Sci Comput 22.
    • (2000) SIAM J Sci Comput , vol.22
    • Engelborghs, K.1    Luzyanina, T.2    In t Hout, K.3    Roose, D.4
  • 26
    • 0030925073 scopus 로고
    • Assembly of a bZIP-bHLH transcription activation complex: Formation of the yeast Cbf1-Met4-Met28 complex is regulated through Met28 stimulation of Cbf1 DNA binding
    • Kuras L, Barbey R, Thomas D (1995) Assembly of a bZIP-bHLH transcription activation complex: formation of the yeast Cbf1-Met4-Met28 complex is regulated through Met28 stimulation of Cbf1 DNA binding. The EMBO journal 16: 2441-2451.
    • (1995) The EMBO Journal , vol.16 , pp. 2441-2451
    • Kuras, L.1    Barbey, R.2    Thomas, D.3
  • 27
    • 33751544234 scopus 로고    scopus 로고
    • Destabilization of binding to cofactors and SCFMet30 is the ratelimiting regulatory step in degradation of polyubiquitinated Met4
    • Chandrasekaran S, Deffenbaugh A, Ford D, Bailly E, Mathias N, et al. (2006) Destabilization of binding to cofactors and SCFMet30 is the ratelimiting regulatory step in degradation of polyubiquitinated Met4. Molecular cell 24: 689-699.
    • (2006) Molecular Cell , vol.24 , pp. 689-699
    • Chandrasekaran, S.1    Deffenbaugh, A.2    Ford, D.3    Bailly, E.4    Mathias, N.5
  • 28
    • 0345305434 scopus 로고    scopus 로고
    • Synergistic repression of anaerobic genes by Mot3 and Rox1 in Saccharomyces cerevisiae
    • Kovacech B, Nasmyth K, Schuster T (2003) Synergistic repression of anaerobic genes by Mot3 and Rox1 in Saccharomyces cerevisiae. Nucleic Acids Research 31: 5831-5837.
    • (2003) Nucleic Acids Research , vol.31 , pp. 5831-5837
    • Kovacech, B.1    Nasmyth, K.2    Schuster, T.3
  • 29
    • 0029894929 scopus 로고    scopus 로고
    • EGT2 gene transcription is induced predominantly by Swi5 in early G1
    • Sertil O, Kapoor R, D Cohen B, Abramova N, V Lowry C (1996) EGT2 gene transcription is induced predominantly by Swi5 in early G1. Mol Cell Bio 16: 3264-3274.
    • (1996) Mol Cell Bio , vol.16 , pp. 3264-3274
    • Sertil, O.1    Kapoor, R.2    Cohen, B.D.3    Abramova, N.4    Lowry, C.V.5
  • 31
    • 68949136612 scopus 로고    scopus 로고
    • Interlinking positive and negative feedback loops creates a tunable motif in gene regulatory networks
    • Tian XJ, Zhang XP, Liu F, Wang W (2009) Interlinking positive and negative feedback loops creates a tunable motif in gene regulatory networks. Physical Review E 80.
    • (2009) Physical Review E , vol.80
    • Tian, X.J.1    Zhang, X.P.2    Liu, F.3    Wang, W.4
  • 32
    • 34547646131 scopus 로고    scopus 로고
    • Dynamical modeling of syncytial mitotic cycles in Drosophila embryos
    • Calzone L, Thieffry D, Tyson JJ, Novak B (2007) Dynamical modeling of syncytial mitotic cycles in Drosophila embryos. Mol Sys Bio 3: 131-141.
    • (2007) Mol Sys Bio , vol.3 , pp. 131-141
    • Calzone, L.1    Thieffry, D.2    Tyson, J.J.3    Novak, B.4
  • 33
    • 1242274449 scopus 로고    scopus 로고
    • Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems
    • Angeli D, Ferrell ED Jr, Sontag ED (2004) Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems. PNAS 101: 1822-1827.
    • (2004) PNAS , vol.101 , pp. 1822-1827
    • Angeli, D.1    Ferrell Jr., E.D.2    Sontag, E.D.3
  • 34
    • 34447282729 scopus 로고
    • Springer Series in Synergetics Gardiner CW, ed. Berlin: Springer
    • Thomas R (1981) Quantum Noise. Springer Series in Synergetics Gardiner CW, ed. Berlin: Springer.
    • (1981) Quantum Noise
    • Thomas, R.1
  • 35
    • 0037078982 scopus 로고    scopus 로고
    • Control, exploitation and tolerance of intracellular noise
    • Rao CV, Wolf DM, Arkin AP (2002) Control, exploitation and tolerance of intracellular noise. Nature 420: 231-237.
    • (2002) Nature , vol.420 , pp. 231-237
    • Rao, C.V.1    Wolf, D.M.2    Arkin, A.P.3
  • 39
    • 45249130262 scopus 로고
    • A 3(2) pair of runge-kutta formulas
    • Bogacki P, Shampine L (1989) A 3(2) pair of runge-kutta formulas. Appl Math Letters 2: 1-9.
    • (1989) Appl Math Letters , vol.2 , pp. 1-9
    • Bogacki, P.1    Shampine, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.