Conserved synteny at the protein family level reveals genes underlying Shewanella species' cold tolerance and predicts their novel phenotypes

Functional and Integrative Genomics

Volumn 10, Issue 1, 2010, Pages 97-110

  Karpinets, Tatiana V ^a   Obraztsova, Anna Y ^b   Wang, Yanbing ^b   Schmoyer, Denise D ^a   Kora, Guruprasad H ^a   Park, Byung H ^a   Serres, Margrethe H ^c   Romine, Margaret F ^d   Land, Miriam L ^a   Kothe, Terence B ^a   Fredrickson, Jim K ^d   Nealson, Kenneth H ^b   Uberbacher, Edward C ^a  

^a OAK RIDGE NATIONAL LABORATORY   (United States)

^b UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

^c MARINE BIOLOGICAL LABORATORY   (United States)

^d PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

Author keywords

Bacteria; Molecular mechanisms of cold tolerance; Phenotypic trait; Protein families; Shewanella

Indexed keywords

A CYSTEINE EXPORTER; CHEMOTAXIS SENSORY TRANSDUCER PROTEIN; ETHANOLAMINE; HELICASE; MEMBRANE PROTEIN; PEPTIDASE; PROPYLENE GLYCOL; SODIUM PROTON EXCHANGE PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL METABOLISM; BACTERIAL STRAIN; COLD TOLERANCE; CONTROLLED STUDY; FUNCTIONAL GENOMICS; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC CONSERVATION; MICROBIAL DEGRADATION; MOLECULAR MECHANICS; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FAMILY; SALT TOLERANCE; SHEWANELLA; SHEWANELLA PUTREFACIENS; SHEWANELLA WOODYI; SIGNAL TRANSDUCTION; SYNTENY;

ADAPTATION, PHYSIOLOGICAL; BACTERIAL PROTEINS; COLD TEMPERATURE; GENES, BACTERIAL; GENETIC LOCI; MULTIGENE FAMILY; PHENOTYPE; PROTEIN STRUCTURE, TERTIARY; SALT-TOLERANCE; SEQUENCE ANALYSIS, DNA; SHEWANELLA; SPECIES SPECIFICITY; SYNTENY;

SHEWANELLA; SHEWANELLA BENTHICA; SHEWANELLA PUTREFACIENS; SHEWANELLA SP.; SHEWANELLA WOODYI;

EID: 77949423551     PISSN: 1438793X     EISSN: 14387948     Source Type: Journal    
DOI: 10.1007/s10142-009-0142-y     Document Type: Article

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