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Volumn 11, Issue 1, 2010, Pages

Hyper-expansion of large DNA segments in the genome of kuruma shrimp, Marsupenaeus japonicus

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; GENOMIC DNA; INHIBITOR OF APOPTOSIS PROTEIN; MICROSATELLITE DNA;

EID: 77949352365     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-141     Document Type: Article
Times cited : (32)

References (44)
  • 1
    • 34249786889 scopus 로고    scopus 로고
    • Amphipod genome sizes: first estimates for Arctic species reveal genomic giants
    • 10.1139/G06-155, 17546080
    • Rees DJ, Dufresne F, Glémet H, Belzile C. Amphipod genome sizes: first estimates for Arctic species reveal genomic giants. Genome 2007, 50:151-158. 10.1139/G06-155, 17546080.
    • (2007) Genome , vol.50 , pp. 151-158
    • Rees, D.J.1    Dufresne, F.2    Glémet, H.3    Belzile, C.4
  • 3
    • 0017264535 scopus 로고
    • Conservation of repeated DNA base sequences in Crustacea: a molecular approach to decapod phylogeny
    • Vaughn JC, Traeger FJ. Conservation of repeated DNA base sequences in Crustacea: a molecular approach to decapod phylogeny. J Mol Evol 1976, 29:111-131.
    • (1976) J Mol Evol , vol.29 , pp. 111-131
    • Vaughn, J.C.1    Traeger, F.J.2
  • 4
    • 0019332151 scopus 로고
    • Evidence for nonrandom alterations in a fraction of the highly repetitive DNA of a eukaryote
    • Christie NT, Skinner DM. Evidence for nonrandom alterations in a fraction of the highly repetitive DNA of a eukaryote. Nucleic Acids Res 1980, 25:279-298.
    • (1980) Nucleic Acids Res , vol.25 , pp. 279-298
    • Christie, N.T.1    Skinner, D.M.2
  • 5
    • 33748422108 scopus 로고    scopus 로고
    • Shelling out for genomics
    • 10.1186/gb-2006-7-4-312, 1557997, 16677410
    • McClintock TS, Derby CD. Shelling out for genomics. Genome Biol 2006, 7:312. 10.1186/gb-2006-7-4-312, 1557997, 16677410.
    • (2006) Genome Biol , vol.7 , pp. 312
    • McClintock, T.S.1    Derby, C.D.2
  • 6
    • 0035855865 scopus 로고    scopus 로고
    • Arthropod phylogeny based on eight molecular loci and morphology
    • 10.1038/35093097, 11557979
    • Giribet G, Edgecombe GD, Wheeler WC. Arthropod phylogeny based on eight molecular loci and morphology. Nature 2001, 413:157-161. 10.1038/35093097, 11557979.
    • (2001) Nature , vol.413 , pp. 157-161
    • Giribet, G.1    Edgecombe, G.D.2    Wheeler, W.C.3
  • 7
    • 16844382374 scopus 로고    scopus 로고
    • Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods arenot monophyletic
    • 10.1098/rspb.2004.2917, 1634985, 15734694
    • Regier JC, Shultz JW, Kambic RE. Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods arenot monophyletic. Proc Biol Sci 2005, 272:395-401. 10.1098/rspb.2004.2917, 1634985, 15734694.
    • (2005) Proc Biol Sci , vol.272 , pp. 395-401
    • Regier, J.C.1    Shultz, J.W.2    Kambic, R.E.3
  • 9
    • 0002916432 scopus 로고
    • Meiotic chromosome complements and nuclear DNA contents of four species of shrimps of the genus Penaeus
    • Chow S, Dougherty WJ, Sandifer PA. Meiotic chromosome complements and nuclear DNA contents of four species of shrimps of the genus Penaeus. J Crustacean Biol 1990, 10:29-36.
    • (1990) J Crustacean Biol , vol.10 , pp. 29-36
    • Chow, S.1    Dougherty, W.J.2    Sandifer, P.A.3
  • 10
    • 0015937516 scopus 로고
    • Nuclear DNA amounts in pacific Crustacea
    • 10.1007/BF00294271, 4747576
    • Bachmann K, Rheinsmith EL. Nuclear DNA amounts in pacific Crustacea. Chromosoma 1973, 43:225-236. 10.1007/BF00294271, 4747576.
    • (1973) Chromosoma , vol.43 , pp. 225-236
    • Bachmann, K.1    Rheinsmith, E.L.2
  • 14
    • 0035167246 scopus 로고    scopus 로고
    • Complete genome sequence of the shrimp white spot bacilliform virus
    • 10.1128/JVI.75.23.11811-11820.2001, 114767, 11689662
    • Yang F, He J, Lin X, Li Q, Pan D, Zhang X, Xu X. Complete genome sequence of the shrimp white spot bacilliform virus. J Virol 2001, 75:11811-11820. 10.1128/JVI.75.23.11811-11820.2001, 114767, 11689662.
    • (2001) J Virol , vol.75 , pp. 11811-11820
    • Yang, F.1    He, J.2    Lin, X.3    Li, Q.4    Pan, D.5    Zhang, X.6    Xu, X.7
  • 15
    • 1542513556 scopus 로고    scopus 로고
    • Mobile elements: drivers of genome evolution
    • 10.1126/science.1089670, 15016989
    • Kazazian HH. Mobile elements: drivers of genome evolution. Science 2004, 303:1626-1632. 10.1126/science.1089670, 15016989.
    • (2004) Science , vol.303 , pp. 1626-1632
    • Kazazian, H.H.1
  • 17
    • 77950384199 scopus 로고    scopus 로고
    • FlyBase
    • FlyBase. , http://flybase.bio.indiana.edu
  • 18
    • 77950395237 scopus 로고    scopus 로고
    • WFleaBase
    • wFleaBase. , http://wfleabase.org
  • 21
    • 38949142280 scopus 로고    scopus 로고
    • Annotation and expression profiling of apoptosis-related genes in the yellow fever mosquito, Aedes aegypti
    • 2258459, 18252247
    • Bryant B, Blair CD, Olson KE, Clem RJ. Annotation and expression profiling of apoptosis-related genes in the yellow fever mosquito, Aedes aegypti. Insect Biochem Mol Biol 2008, 38:331-345. 2258459, 18252247.
    • (2008) Insect Biochem Mol Biol , vol.38 , pp. 331-345
    • Bryant, B.1    Blair, C.D.2    Olson, K.E.3    Clem, R.J.4
  • 22
    • 43049091895 scopus 로고    scopus 로고
    • IAPs: what's in a name?
    • 10.1016/j.molcel.2008.03.008, 2677451, 18439892
    • Srinivasula SM, Ashwell JD. IAPs: what's in a name?. Mol Cell 2008, 30:123-135. 10.1016/j.molcel.2008.03.008, 2677451, 18439892.
    • (2008) Mol Cell , vol.30 , pp. 123-135
    • Srinivasula, S.M.1    Ashwell, J.D.2
  • 23
    • 0034921727 scopus 로고    scopus 로고
    • Inhibitor of apoptosis proteins and their relatives: IAPs and other BIRPs
    • Verhagen AM, Coulson EJ, Vaux DL. Inhibitor of apoptosis proteins and their relatives: IAPs and other BIRPs. Genome Biol 2001, 2:reviews3009.1-3009.10.
    • (2001) Genome Biol , vol.2
    • Verhagen, A.M.1    Coulson, E.J.2    Vaux, D.L.3
  • 25
    • 36349011345 scopus 로고    scopus 로고
    • Molecular cloning and characterization of an inhibitor of apoptosis protein (IAP) from the tiger shrimp, Penaeus monodon
    • 10.1016/j.dci.2007.05.005, 17628672
    • Leu JH, Kuo YC, Kou GH, Lo CF. Molecular cloning and characterization of an inhibitor of apoptosis protein (IAP) from the tiger shrimp, Penaeus monodon. Dev Comp Immunol 2008, 32:121-133. 10.1016/j.dci.2007.05.005, 17628672.
    • (2008) Dev Comp Immunol , vol.32 , pp. 121-133
    • Leu, J.H.1    Kuo, Y.C.2    Kou, G.H.3    Lo, C.F.4
  • 26
    • 32944462309 scopus 로고    scopus 로고
    • Anti-immunology: evasion of the host immune system by bacterial and viral pathogens
    • 10.1016/j.cell.2006.01.034, 16497587
    • Finlay BB, McFadden G. Anti-immunology: evasion of the host immune system by bacterial and viral pathogens. Cell 2006, 124:767-782. 10.1016/j.cell.2006.01.034, 16497587.
    • (2006) Cell , vol.124 , pp. 767-782
    • Finlay, B.B.1    McFadden, G.2
  • 27
    • 59649124991 scopus 로고    scopus 로고
    • Genome-wide survey for baculoviral host homologs using the Bombyx genome sequence
    • 10.1016/j.ibmb.2008.05.008, 19280699
    • Katsuma S, Kawaoka S, Mita K, Shimada T. Genome-wide survey for baculoviral host homologs using the Bombyx genome sequence. Insect Biochem Mol Biol 2008, 38:1080-1086. 10.1016/j.ibmb.2008.05.008, 19280699.
    • (2008) Insect Biochem Mol Biol , vol.38 , pp. 1080-1086
    • Katsuma, S.1    Kawaoka, S.2    Mita, K.3    Shimada, T.4
  • 28
    • 0037572252 scopus 로고    scopus 로고
    • Genome-wide survey for genes horizontally transferred from cellular organisms to baculoviruses
    • 10.1093/molbev/msg107, 12716988
    • Hughes AL, Friedman R. Genome-wide survey for genes horizontally transferred from cellular organisms to baculoviruses. Mol Biol Evol 2003, 20:979-987. 10.1093/molbev/msg107, 12716988.
    • (2003) Mol Biol Evol , vol.20 , pp. 979-987
    • Hughes, A.L.1    Friedman, R.2
  • 29
    • 0037271850 scopus 로고    scopus 로고
    • Viral mimicry of cytokines, chemokines and their receptors
    • 10.1038/nri980, 12511874
    • Alcami A. Viral mimicry of cytokines, chemokines and their receptors. Nat Rev Immunol 2003, 3:36-50. 10.1038/nri980, 12511874.
    • (2003) Nat Rev Immunol , vol.3 , pp. 36-50
    • Alcami, A.1
  • 31
    • 0034500239 scopus 로고    scopus 로고
    • Polyploid incidence and evolution
    • 10.1146/annurev.genet.34.1.401, 11092833
    • Otto SP, Whitton J. Polyploid incidence and evolution. Annu Rev Genet 2000, 34:401-437. 10.1146/annurev.genet.34.1.401, 11092833.
    • (2000) Annu Rev Genet , vol.34 , pp. 401-437
    • Otto, S.P.1    Whitton, J.2
  • 33
    • 24344442909 scopus 로고    scopus 로고
    • Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication
    • 10.1038/nature04029, 1368961, 16136133
    • Linardopoulou EV, Williams EM, Fan Y, Friedman C, Young JM, Trask BJ. Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication. Nature 2005, 437:94-100. 10.1038/nature04029, 1368961, 16136133.
    • (2005) Nature , vol.437 , pp. 94-100
    • Linardopoulou, E.V.1    Williams, E.M.2    Fan, Y.3    Friedman, C.4    Young, J.M.5    Trask, B.J.6
  • 34
    • 34948898172 scopus 로고    scopus 로고
    • A model of segmental duplication formation in Drosophila melanogaster
    • 10.1101/gr.6208307, 1987339, 17726166
    • Fiston-Lavier AS, Anxolabehere D, Quesneville H. A model of segmental duplication formation in Drosophila melanogaster. Genome Res 2007, 17:1458-1470. 10.1101/gr.6208307, 1987339, 17726166.
    • (2007) Genome Res , vol.17 , pp. 1458-1470
    • Fiston-Lavier, A.S.1    Anxolabehere, D.2    Quesneville, H.3
  • 35
    • 33750497441 scopus 로고    scopus 로고
    • Isolation and mapping of telomeric pentanucleotide (TAACC)n repeats of the Pacific whiteleg shrimp, Penaeus vannamei, using fluorescence in situ hybridization
    • 10.1007/s10126-005-6031-z, 16729213
    • Alcivar-Warren A, Meehan-Meola D, Wang Y, Guo X, Zhou L, Xiang J, Moss S, Arce S, Warren W, Xu Z, Bell K. Isolation and mapping of telomeric pentanucleotide (TAACC)n repeats of the Pacific whiteleg shrimp, Penaeus vannamei, using fluorescence in situ hybridization. Mar Biotechnol (NY) 2006, 8:467-480. 10.1007/s10126-005-6031-z, 16729213.
    • (2006) Mar Biotechnol (NY) , vol.8 , pp. 467-480
    • Alcivar-Warren, A.1    Meehan-Meola, D.2    Wang, Y.3    Guo, X.4    Zhou, L.5    Xiang, J.6    Moss, S.7    Arce, S.8    Warren, W.9    Xu, Z.10    Bell, K.11
  • 37
    • 41749118321 scopus 로고    scopus 로고
    • A highly conserved segmental duplication in the subtelomeres of Plasmodium falciparum chromosomes varies in copy number
    • 10.1186/1475-2875-7-46, 2279139, 18325124
    • Mok BW, Ribacke U, Sherwood E, Wahlgren M. A highly conserved segmental duplication in the subtelomeres of Plasmodium falciparum chromosomes varies in copy number. Malar J 2008, 7:46. 10.1186/1475-2875-7-46, 2279139, 18325124.
    • (2008) Malar J , vol.7 , pp. 46
    • Mok, B.W.1    Ribacke, U.2    Sherwood, E.3    Wahlgren, M.4
  • 38
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B, Hillier L, Wendl MC, Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 1998, 8:175-185.
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 39
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B, Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 1998, 8:186-194.
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 40
    • 0031955116 scopus 로고    scopus 로고
    • Consed: a graphical tool for sequence finishing
    • Gordon D, Abajian C, Green P. Consed: a graphical tool for sequence finishing. Genome Res 1998, 8:195-202.
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 41
    • 0004239562 scopus 로고    scopus 로고
    • RepeatMasker
    • RepeatMasker. , http://www.repeatmasker.org
  • 42
    • 77950452090 scopus 로고    scopus 로고
    • GENSCAN
    • GENSCAN. , http://genes.mit.edu/GENSCAN.html
  • 43
    • 1842869638 scopus 로고
    • Simple and rapid technique for a chromosome study of crustacea [in Japanese]
    • Hasegawa M. Simple and rapid technique for a chromosome study of crustacea [in Japanese]. Researches on Crustacea 1981, 11:110-112.
    • (1981) Researches on Crustacea , vol.11 , pp. 110-112
    • Hasegawa, M.1
  • 44
    • 84948170836 scopus 로고    scopus 로고
    • InterProScan
    • InterProScan. , http://www.ebi.ac.uk/Tools/InterProScan/


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.