-
1
-
-
0033953222
-
Critical factors influencing the recovery and integrity of rRNA extracted from environmental samples: Use of an optimized protocol to measure depth-related biomass distribution in freshwater sediments
-
Alm EW Stahl DA (2000) Critical factors influencing the recovery and integrity of rRNA extracted from environmental samples: use of an optimized protocol to measure depth-related biomass distribution in freshwater sediments. J Microbiol Meth 40 : 153 162.
-
(2000)
J Microbiol Meth
, vol.40
, pp. 153-162
-
-
Alm, E.W.1
Stahl, D.A.2
-
2
-
-
33644821142
-
Heterotrophic archaea dominate sedimentary subsurface ecosystems off Peru
-
Biddle JF, Lipp JS, Lever MA et al 2006) Heterotrophic archaea dominate sedimentary subsurface ecosystems off Peru. P Natl Acad Sci USA 103 : 3846 3851.
-
(2006)
P Natl Acad Sci USA
, vol.103
, pp. 3846-3851
-
-
Biddle, J.F.1
Lipp, J.S.2
Lever, M.A.3
-
3
-
-
2142773830
-
Improved purification and yields of RNA by RNeasy
-
Bonham MJ Danielpour D (1996) Improved purification and yields of RNA by RNeasy. BioTechniques 21 : 57 60.
-
(1996)
BioTechniques
, vol.21
, pp. 57-60
-
-
Bonham, M.J.1
Danielpour, D.2
-
4
-
-
64149097786
-
The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments
-
Bustin SA, Benes V, Garson JA et al 2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem 55 : 611 622.
-
(2009)
Clin Chem
, vol.55
, pp. 611-622
-
-
Bustin, S.A.1
Benes, V.2
Garson, J.A.3
-
5
-
-
0032432372
-
Redefining relativity: Quantitative PCR at low template concentrations for industrial and environmental microbiology
-
Chandler DP (1998) Redefining relativity: quantitative PCR at low template concentrations for industrial and environmental microbiology. J Ind Microbiol Biot 21 : 128 140.
-
(1998)
J Ind Microbiol Biot
, vol.21
, pp. 128-140
-
-
Chandler, D.P.1
-
6
-
-
0026755238
-
Archaea in coastal marine environments
-
DeLong EF (1992) Archaea in coastal marine environments. P Natl Acad Sci USA 89 : 5685 5689.
-
(1992)
P Natl Acad Sci USA
, vol.89
, pp. 5685-5689
-
-
Delong, E.F.1
-
7
-
-
33644858722
-
-
Ocean Drilling Program, Texas A & M University. College Station, TX
-
D'Hondt SL, Jørgensen BB, Miller DJ Party SS (2003) Proceedings of the Ocean Drilling Program: Initial Reports. Ocean Drilling Program, Texas A & M University, College Station, TX.
-
(2003)
Proceedings of the Ocean Drilling Program: Initial Reports.
-
-
D'Hondt, S.L.1
Jørgensen, B.B.2
Miller, D.J.3
Party, S.S.4
-
8
-
-
33748799692
-
Addressing fluorogenic real-time qPCR inhibition using the novel custom Excel file system 'FocusField2-6GallupqPCRSet-upTool-001' to attain consistently high fidelity qPCR reactions
-
Gallup JM Ackermann MR (2006) Addressing fluorogenic real-time qPCR inhibition using the novel custom Excel file system 'FocusField2-6GallupqPCRSet- upTool-001' to attain consistently high fidelity qPCR reactions. Biol Proced Online 8 : 87 152.
-
(2006)
Biol Proced Online
, vol.8
, pp. 87-152
-
-
Gallup, J.M.1
Ackermann, M.R.2
-
9
-
-
34848920068
-
An efficient purification and fractionation of genomic DNA from soil by modified troughing method
-
Harnpicharnchai P, Thongaram T, Sriprang R, Champreda V, Tanapongpipat S Eurwilaichitr L (2007) An efficient purification and fractionation of genomic DNA from soil by modified troughing method. Lett Appl Microbiol 45 : 387 391.
-
(2007)
Lett Appl Microbiol
, vol.45
, pp. 387-391
-
-
Harnpicharnchai, P.1
Thongaram, T.2
Sriprang, R.3
Champreda, V.4
Tanapongpipat, S.5
Eurwilaichitr, L.6
-
10
-
-
0035487188
-
Simultaneous recovery of RNA and DNA from soils and sediments
-
Hurt RA, Qiu X, Wu L, Roh Y, Palumbo AV, Tiedje JM Zhou J (2001) Simultaneous recovery of RNA and DNA from soils and sediments. Appl Environ Microb 67 : 4495 4503.
-
(2001)
Appl Environ Microb
, vol.67
, pp. 4495-4503
-
-
Hurt, R.A.1
Qiu, X.2
Wu, L.3
Roh, Y.4
Palumbo, A.V.5
Tiedje, J.M.6
Zhou, J.7
-
11
-
-
2142857748
-
Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk
-
Inagaki F, Suzuki M, Takai K et al 2003) Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk. Appl Environ Microb 69 : 7224 7235.
-
(2003)
Appl Environ Microb
, vol.69
, pp. 7224-7235
-
-
Inagaki, F.1
Suzuki, M.2
Takai, K.3
-
12
-
-
10444248885
-
1-metabolizing prokaryotic communities in methane seep habitats at the Kuroshima Knoll, Southern Ryukyu Arc, by analyzing pmoA, mmoX, mxaF, mcrA, and 16S rRNA genes
-
1-metabolizing prokaryotic communities in methane seep habitats at the Kuroshima Knoll, Southern Ryukyu Arc, by analyzing pmoA, mmoX, mxaF, mcrA, and 16S rRNA genes. Appl Environ Microb 70 : 7445 7455.
-
(2004)
Appl Environ Microb
, vol.70
, pp. 7445-7455
-
-
Inagaki, F.1
Tsunogai, U.2
Suzuki, M.3
-
13
-
-
33644505436
-
Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin
-
Inagaki F, Nunoura T, Nakagawa S et al 2006) Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin. P Natl Acad Sci USA 103 : 2815 2820.
-
(2006)
P Natl Acad Sci USA
, vol.103
, pp. 2815-2820
-
-
Inagaki, F.1
Nunoura, T.2
Nakagawa, S.3
-
14
-
-
0032534813
-
RNA quantitation by fluorescence-based solution assay: RiboGreen reagent characterization
-
Jones LJ, Yue ST, Cheung C-Y Singer VL (1998) RNA quantitation by fluorescence-based solution assay: RiboGreen reagent characterization. Anal Biochem 265 : 368 374.
-
(1998)
Anal Biochem
, vol.265
, pp. 368-374
-
-
Jones, L.J.1
Yue, S.T.2
Cheung, C.-Y.3
Singer, V.L.4
-
15
-
-
0025677844
-
Variations in sedimentary carbon remineralization rates in the White Oak River estuary, North Carolina
-
Kelley CA, Martens CS Chanton JP (1990) Variations in sedimentary carbon remineralization rates in the White Oak River estuary, North Carolina. Limnol Oceanogr 35 : 372 383.
-
(1990)
Limnol Oceanogr
, vol.35
, pp. 372-383
-
-
Kelley, C.A.1
Martens, C.S.2
Chanton, J.P.3
-
16
-
-
0030048084
-
Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein
-
Kreader CA (1996) Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein. Appl Environ Microb 62 : 1102 1106.
-
(1996)
Appl Environ Microb
, vol.62
, pp. 1102-1106
-
-
Kreader, C.A.1
-
17
-
-
33845603602
-
Comparative analysis of environmental DNA extraction and purification methods from different humic acid-rich soils
-
Lakay FM, Botha A Prior BA (2006) Comparative analysis of environmental DNA extraction and purification methods from different humic acid-rich soils. J Appl Microbiol 102 : 265 273.
-
(2006)
J Appl Microbiol
, vol.102
, pp. 265-273
-
-
Lakay, F.M.1
Botha, A.2
Prior, B.A.3
-
18
-
-
54749127402
-
Microbial activity in surficial sediments overlying acoustic wipeout zones at a Gulf of Mexico cold seep
-
DOI:
-
Lapham LL, Chanton JP, Martens CS, Sleeper K Woolsey JR (2008) Microbial activity in surficial sediments overlying acoustic wipeout zones at a Gulf of Mexico cold seep. Geochem Geophy Geosy 9 : Q06001, DOI :.
-
(2008)
Geochem Geophy Geosy
, vol.9
, pp. 06001
-
-
Lapham, L.L.1
Chanton, J.P.2
Martens, C.S.3
Sleeper, K.4
Woolsey, J.R.5
-
19
-
-
77949299545
-
-
Microbially-driven methane and sulfur cycling in a Gulf of Mexico methane seep and the White Oak River estuary. Ph.D. thesis, University of North Carolina at Chapel Hill, Chapel Hill, NC
-
Lloyd KG (2009) Microbially-driven methane and sulfur cycling in a Gulf of Mexico methane seep and the White Oak River estuary. Ph.D. thesis, University of North Carolina at Chapel Hill, Chapel Hill, NC.
-
(2009)
-
-
Lloyd, K.G.1
-
20
-
-
33751019178
-
An anaerobic methane-oxidizing community of ANME-1b archaea in hypersaline Gulf of Mexico sediments
-
Lloyd KG, Lapham L Teske A (2006) An anaerobic methane-oxidizing community of ANME-1b archaea in hypersaline Gulf of Mexico sediments. Appl Environ Microb 72 : 7218 7230.
-
(2006)
Appl Environ Microb
, vol.72
, pp. 7218-7230
-
-
Lloyd, K.G.1
Lapham, L.2
Teske, A.3
-
21
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig W, Strunk O, Westram R et al 2004) ARB: a software environment for sequence data. Nucleic Acids Res 32 : 1363 1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
-
22
-
-
33644871362
-
DNA extraction procedure: A critical issue for bacterial diversity assessment in marine sediments
-
Luna GM, Dell'Anno A Danovaro R (2006) DNA extraction procedure: a critical issue for bacterial diversity assessment in marine sediments. Environ Microbiol 8 : 308 320.
-
(2006)
Environ Microbiol
, vol.8
, pp. 308-320
-
-
Luna, G.M.1
Dell'Anno, A.2
Danovaro, R.3
-
23
-
-
0035349953
-
DNA extraction from soils: Old bias for new microbial diversity analysis methods
-
Martin-Laurent F, Philippot L, Hallet S, Chaussod R, Germon JC, Soulas G Catroux G (2001) DNA extraction from soils: old bias for new microbial diversity analysis methods. Appl Environ Microb 67 : 2354 2359.
-
(2001)
Appl Environ Microb
, vol.67
, pp. 2354-2359
-
-
Martin-Laurent, F.1
Philippot, L.2
Hallet, S.3
Chaussod, R.4
Germon, J.C.5
Soulas, G.6
Catroux, G.7
-
24
-
-
0032703237
-
Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples
-
Miller DN, Bryant JE, Madsen EL Ghiorse WC (1999) Evaluation and optimization of DNA extraction and purification procedures for soil and sediment samples. Appl Environ Microb 65 : 4715 4724.
-
(1999)
Appl Environ Microb
, vol.65
, pp. 4715-4724
-
-
Miller, D.N.1
Bryant, J.E.2
Madsen, E.L.3
Ghiorse, W.C.4
-
25
-
-
0035795216
-
Efficient isolation of total RNA from Clostridium without DNA contamination
-
Nuyts S, Van Mellaert L, Lambin P Anné J (2001) Efficient isolation of total RNA from Clostridium without DNA contamination. J Microbiol Meth 44 : 235 238.
-
(2001)
J Microbiol Meth
, vol.44
, pp. 235-238
-
-
Nuyts, S.1
Van Mellaert, L.2
Lambin, P.3
Anné, J.4
-
27
-
-
37549027613
-
SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J Glöckner FO (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35 : 7188 7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glöckner, F.O.7
-
29
-
-
33745121530
-
Quantification of microbial communities in near-surface and deeply buried marine sediments on the Peru continental margin using real-time PCR
-
Schippers A Neretin LN (2006) Quantification of microbial communities in near-surface and deeply buried marine sediments on the Peru continental margin using real-time PCR. Environ Microbiol 8 : 1251 1260.
-
(2006)
Environ Microbiol
, vol.8
, pp. 1251-1260
-
-
Schippers, A.1
Neretin, L.N.2
-
30
-
-
14544290535
-
Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria
-
Schippers A, Neretin LN, Kallmeyer J, Ferdelman TG, Cragg BA, Parkes RJ Jørgensen BB (2005) Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria. Nature 433 : 861 864.
-
(2005)
Nature
, vol.433
, pp. 861-864
-
-
Schippers, A.1
Neretin, L.N.2
Kallmeyer, J.3
Ferdelman, T.G.4
Cragg, B.A.5
Parkes, R.J.6
Jørgensen, B.B.7
-
31
-
-
33847334185
-
Quantification of functional genes from procaryotes in soil by PCR
-
Sharma S, Radl V, Hai B et al 2007) Quantification of functional genes from procaryotes in soil by PCR. J Microbiol Meth 68 : 445 452.
-
(2007)
J Microbiol Meth
, vol.68
, pp. 445-452
-
-
Sharma, S.1
Radl, V.2
Hai, B.3
-
32
-
-
33847078060
-
Sodium sulphite enhances RNA isolation and sensitivity of cucumber mosaic virus detection by RT-PCR in black pepper
-
Siju S, Madhubala R Bhat AI (2007) Sodium sulphite enhances RNA isolation and sensitivity of cucumber mosaic virus detection by RT-PCR in black pepper. J Virol Methods 141 : 107 110.
-
(2007)
J Virol Methods
, vol.141
, pp. 107-110
-
-
Siju, S.1
Madhubala, R.2
Bhat, A.I.3
-
33
-
-
0031194671
-
Characterization of PicoGreen reagent and development of a fluorescence-based solution assay for double-stranded DNA quantitation
-
Singer VL, Jones LJ, Yue ST Haugland RP (1997) Characterization of PicoGreen reagent and development of a fluorescence-based solution assay for double-stranded DNA quantitation. Anal Biochem 249 : 228 238.
-
(1997)
Anal Biochem
, vol.249
, pp. 228-238
-
-
Singer, V.L.1
Jones, L.J.2
Yue, S.T.3
Haugland, R.P.4
-
34
-
-
33746079233
-
Stratified communities of active archaea in deep marine subsurface sediments
-
Sørensen KB Teske A (2006) Stratified communities of active archaea in deep marine subsurface sediments. Appl Environ Microb 72 : 4596 4603.
-
(2006)
Appl Environ Microb
, vol.72
, pp. 4596-4603
-
-
Sørensen, K.B.1
Teske, A.2
-
35
-
-
23944448941
-
Archaeal phylotypes in a metal-rich and low-activity deep subsurface sediment of the Peru Basin, ODP Leg 201, site 1231
-
Sørensen KB, Lauer A Teske A (2004) Archaeal phylotypes in a metal-rich and low-activity deep subsurface sediment of the Peru Basin, ODP Leg 201, site 1231. Geobiology 2 : 151 161.
-
(2004)
Geobiology
, vol.2
, pp. 151-161
-
-
Sørensen, K.B.1
Lauer, A.2
Teske, A.3
-
36
-
-
41149093627
-
Uncultured archaea in deep marine subsurface sediments: Have we caught them all?
-
Teske A Sørensen KB (2008) Uncultured archaea in deep marine subsurface sediments: have we caught them all? ISME J 2 : 3 18.
-
(2008)
ISME J
, vol.2
, pp. 3-18
-
-
Teske, A.1
Sørensen, K.B.2
-
37
-
-
33846057772
-
Comparison of five commercial DNA extraction kits for the recovery of Francisella tularensis DNA from spiked soil samples
-
Whitehouse CA Hottel HE (2007) Comparison of five commercial DNA extraction kits for the recovery of Francisella tularensis DNA from spiked soil samples. Mol Cell Probe 21 : 92 96.
-
(2007)
Mol Cell Probe
, vol.21
, pp. 92-96
-
-
Whitehouse, C.A.1
Hottel, H.E.2
-
38
-
-
33646076727
-
Specific bacterial, archaeal, and eukaryotic communities in tidal-flat sediments along a vertical profile of several meters
-
Wilms R, Sass H, Köpke B, Köster J, Cypionka H Engelen B (2006) Specific bacterial, archaeal, and eukaryotic communities in tidal-flat sediments along a vertical profile of several meters. Appl Environ Microb 72 : 2756 2764.
-
(2006)
Appl Environ Microb
, vol.72
, pp. 2756-2764
-
-
Wilms, R.1
Sass, H.2
Köpke, B.3
Köster, J.4
Cypionka, H.5
Engelen, B.6
-
39
-
-
25144516314
-
Analysis of community structures in anaerobic processes using a quantitative real-time PCR method
-
Yu Y, Lee C Hwang S (2005) Analysis of community structures in anaerobic processes using a quantitative real-time PCR method. Water Sci Technol 52 : 85 91.
-
(2005)
Water Sci Technol
, vol.52
, pp. 85-91
-
-
Yu, Y.1
Lee, C.2
Hwang, S.3
|