Performance of enterovirus genotyping targeting the VP1 and VP2 regions on non-typeable isolates and patient specimens

Journal of Virological Methods

Volumn 165, Issue 1, 2010, Pages 46-50

  She, Rosemary C ^a,b   Hymas, Weston C ^b   Taggart, Edward W ^b   Petti, Cathy A ^a,b   Hillyard, David R ^a,b  

^a UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

^b ARUP LABORATORIES   (United States)

Author keywords

Coxsackievirus; Echovirus; Enterovirus 68; Poliovirus; Serotype

Indexed keywords

PROTEIN VP1; PROTEIN VP2; VIRUS ANTIBODY;

5' UNTRANSLATED REGION; ANTIBODY TITER; ARTICLE; BLOOD; CEREBROSPINAL FLUID; CONTROLLED STUDY; COXSACKIE VIRUS B; COXSACKIE VIRUS B1; ECHO VIRUS; ENTEROVIRUS; ENTEROVIRUS INFECTION; GENE AMPLIFICATION; GENOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMA; PRIORITY JOURNAL; PROTEIN TARGETING; RHINOVIRUS; SEROTYPE; SERUM; VIRUS ISOLATION;

CEREBROSPINAL FLUID; ENTEROVIRUS; ENTEROVIRUS INFECTIONS; HUMANS; PLASMA; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY;

COXSACKIEVIRUS; ECHOVIRUS; ENTEROVIRUS; HUMAN ECHOVIRUS 18; HUMAN ECHOVIRUS 30; HUMAN ECHOVIRUS 6; HUMAN ENTEROVIRUS 68; POLIOVIRUS; RHINOVIRUS;

EID: 77649338943     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2009.12.016     Document Type: Article

References (24)

1. Arita M., Zhu S.L., Yoshida H., Yoneyama T., Miyamura T., and Shimizu H. A Sabin 3-derived poliovirus recombinant contained a sequence homologous with indigenous human enterovirus species C in the viral polymerase coding region. J. Virol. 79 (2005) 12650-12657
2. Blomqvist S., Savolainen C., Raman L., Roivainen M., and Hovi T. Human rhinovirus 87 and enterovirus 68 represent a unique serotype with rhinovirus and enterovirus features. J. Clin. Microbiol. 40 (2002) 4218-4223
3. Caro V., Guillot S., Delpeyroux F., and Crainic R. Molecular strategy for 'serotyping' of human enteroviruses. J. Gen. Virol. 82 (2001) 79-91
4. Deffernez C., Wunderli W., Thomas Y., Yerly S., Perrin L., and Kaiser L. Amplicon sequencing and improved detection of human rhinovirus in respiratory samples. J. Clin. Microbiol. 42 (2004) 3212-3218
5. Hymas W.C., Aldous W.K., Taggart E.W., Stevenson J.B., and Hillyard D.R. Description and validation of a novel real-time RT-PCR enterovirus assay. Clin. Chem. 54 (2008) 406-413
6. Khetsuriani N., Lamonte-Fowlkes A., Oberst S., and Pallansch M.A. Enterovirus surveillance-United States, 1970-2005. MMWR Surveill. Summ. 55 (2006) 1-20
7. Lukashev A.N., Lashkevich V.A., Ivanova O.E., Koroleva G.A., Hinkkanen A.E., and Ilonen J. Recombination in circulating human enterovirus B: independent evolution of structural and non-structural genome regions. J. Gen. Virol. 86 (2005) 3281-3290
8. Manzara S., Muscillo M., La Rosa G., Marianelli C., Cattani P., and Fadda G. Molecular identification and typing of enteroviruses isolated from clinical specimens. J. Clin. Microbiol. 40 (2002) 4554-4560
9. Mayo M.A., and Pringle C.R. Virus taxonomy-1997. J. Gen. Virol. 79 Pt (4) (1998) 649-657
10. Mirand A., Henquell C., Archimbaud C., Chambon M., Charbonne F., Peigue-Lafeuille H., and Bailly J.L. Prospective identification of enteroviruses involved in meningitis in 2006 through direct genotyping in cerebrospinal fluid. J. Clin. Microbiol. 46 (2008) 87-96
11. Nasri D., Bouslama L., Omar S., Saoudin H., Bourlet T., Aouni M., Pozzetto B., and Pillet S. Typing of human enterovirus by partial sequencing of VP2. J. Clin. Microbiol. 45 (2007) 2370-2379
12. Nix W.A., Oberste M.S., and Pallansch M.A. Sensitive, seminested PCR amplification of VP1 sequences for direct identification of all enterovirus serotypes from original clinical specimens. J. Clin. Microbiol. 44 (2006) 2698-2704
13. Oberste M., Schnurr D., Maher K., al-Busaidy S., and Pallansch M. Molecular identification of new picornaviruses and characterization of a proposed enterovirus 73 serotype. J. Gen. Virol. 82 (2001) 409-416
14. Oberste M.S., Maher K., Flemister M.R., Marchetti G., Kilpatrick D.R., and Pallansch M.A. Comparison of classic and molecular approaches for the identification of untypeable enteroviruses. J. Clin. Microbiol. 38 (2000) 1170-1174
15. Oberste M.S., Maher K., Schnurr D., Flemister M.R., Lovchik J.C., Peters H., Sessions W., Kirk C., Chatterjee N., Fuller S., Hanauer J.M., and Pallansch M.A. Enterovirus 68 is associated with respiratory illness and shares biological features with both the enteroviruses and the rhinoviruses. J. Gen. Virol. 85 (2004) 2577-2584
16. Oberste M.S., Nix W.A., Maher K., and Pallansch M.A. Improved molecular identification of enteroviruses by RT-PCR and amplicon sequencing. J. Clin. Virol. 26 (2003) 375-377
17. Oberste M.S., Penaranda S., Maher K., and Pallansch M.A. Complete genome sequences of all members of the species human enterovirus A. J. Gen. Virol. 85 (2004) 1597-1607
18. Richter J., Koptides D., Tryfonos C., and Christodoulou C. Molecular typing of enteroviruses associated with viral meningitis in Cyprus, 2000-2002. J. Med. Microbiol. 55 (2006) 1035-1041
19. Rigonan A.S., Mann L., and Chonmaitree T. Use of monoclonal antibodies to identify serotypes of enterovirus isolates. J. Clin. Microbiol. 36 (1998) 1877-1881
20. Rotbart H.A. Enzymatic RNA amplification of the enteroviruses. J. Clin. Microbiol. 28 (1990) 438-442
21. She R.C., Crist G., Billetdeaux E., Langer J., and Petti C.A. Comparison of multiple shell vial cell lines for isolation of enteroviruses: a national perspective. J. Clin. Virol. 37 (2006) 151-155
22. Simmonds P., and Welch J. Frequency and dynamics of recombination within different species of human enteroviruses. J. Virol. 80 (2006) 483-493
23. Thoelen I., Moes E., Lemey P., Mostmans S., Wollants E., Lindberg A.M., Vandamme A.M., and Van Ranst M. Analysis of the serotype and genotype correlation of VP1 and the 5′ noncoding region in an epidemiological survey of the human enterovirus B species. J. Clin. Microbiol. 42 (2004) 963-971
24. Yoke-Fun C., and AbuBakar S. Phylogenetic evidence for inter-typic recombination in the emergence of human enterovirus 71 subgenotypes. BMC Microbiol. 6 (2006) 74