-
1
-
-
77649257100
-
-
online, Accessed 9 Oct, 2008. URL
-
Semantic Technologies Center [online]. Accessed 9 Oct, 2008. URL: http://www.oracle.com/technology/tech/semantic-technologies/index. html.
-
Semantic Technologies Center
-
-
-
2
-
-
84870699075
-
-
online, Accessed 21 July, 2008. URL
-
OWL Web Ontology Language Reference [online]. Accessed 21 July, 2008. URL: http://www.w3.org/TR./owl-ref/
-
OWL Web Ontology Language Reference
-
-
-
6
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
Ashburner M, Ball CA, Blake JA, et al. Gene ontology: tool for the unification of biology. Nat Genet. 2000;25(1):25-29.
-
(2000)
Nat Genet
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
-
7
-
-
0842283371
-
A reference ontology for biomedical informatics: The foundational model of anatomy
-
Rosse C, Mejino JL Jr. A reference ontology for biomedical informatics: the foundational model of anatomy. J Biomed Inform. 2003;36:478-500.
-
(2003)
J Biomed Inform
, vol.36
, pp. 478-500
-
-
Rosse, C.1
Mejino Jr, J.L.2
-
8
-
-
35948989284
-
The OBO foundry: Coordinated evolution of ontologies to support biomedical data integration
-
Smith B, Ashburner M, Rosse C, et al. The OBO foundry: coordinated evolution of ontologies to support biomedical data integration. Nature Biotechnology. 2007;25(11):1251-5.
-
(2007)
Nature Biotechnology
, vol.25
, Issue.11
, pp. 1251-1255
-
-
Smith, B.1
Ashburner, M.2
Rosse, C.3
-
10
-
-
15544361895
-
Modeling a description logic vocabulary for cancer research
-
Hartel F, Coronado S, Dionne, R, et al. 2005. Modeling a description logic vocabulary for cancer research, J Biomed Inform. 38:114.
-
(2005)
J Biomed Inform
, vol.38
, pp. 114
-
-
Hartel, F.1
Coronado, S.2
Dionne, R.3
-
11
-
-
16544376975
-
The Cancer Biomedical Informatics Grid: Pioneering an expansive network of information and tools for collaborative cancer research
-
Kakazu KK, Cheung LW, Lynne W. The Cancer Biomedical Informatics Grid: pioneering an expansive network of information and tools for collaborative cancer research. Hawaii Med J. 2004;63(9):273-5.
-
(2004)
Hawaii Med J
, vol.63
, Issue.9
, pp. 273-275
-
-
Kakazu, K.K.1
Cheung, L.W.2
Lynne, W.3
-
12
-
-
0033957844
-
ALFRED: An allele frequency database for diverse populations and DNA polymorphisms
-
Cheung KH, Osier MV, Kidd JR, et al. ALFRED: an allele frequency database for diverse populations and DNA polymorphisms. Nucleic Acids Res. 2000;28(1):361-3.
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 361-363
-
-
Cheung, K.H.1
Osier, M.V.2
Kidd, J.R.3
-
13
-
-
77949266729
-
-
online, Accessed 23 July, 2008. URL
-
ALFRED - The Allele FREquency Database [online]. Accessed 23 July, 2008. URL: http://alfred.med.yale.edu.
-
ALFRED - The Allele FREquency Database
-
-
-
14
-
-
77649261471
-
-
online, Accessed 21 July, 2008. URL
-
Starpath - Tools to analyze pathways [online]. Accessed 21 July, 2008. URL: http://bioinformatics.med.yale.edu/starpath
-
Tools to analyze pathways
-
-
Starpath1
-
15
-
-
77649257952
-
-
Oracle. Oracle Database Semantic Technologies Developer's Guide, 11 g Release 1 (11.1). 2007.
-
Oracle. Oracle Database Semantic Technologies Developer's Guide, 11 g Release 1 (11.1). 2007.
-
-
-
-
16
-
-
0037250633
-
ALFRED - the ALlele FREquency Database - update
-
Rajeevan H, Osier MV, Cheung KH, et al. ALFRED - the ALlele FREquency Database - update. Nucleic Acids Res. 2003;31(1):270-1.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.1
, pp. 270-271
-
-
Rajeevan, H.1
Osier, M.V.2
Cheung, K.H.3
-
18
-
-
77649265285
-
-
PML:, online, Accessed 22, July, 2008. URL
-
PML: Polymorphism Markup Language [online]. Accessed 22, July, 2008. URL: http://www.openpml.org.
-
Polymorphism Markup Language
-
-
-
19
-
-
0032919364
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Ogata H, Goto S, Sato K, et al. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 1999;27(1):29-34.
-
(1999)
Nucleic Acids Res
, vol.27
, Issue.1
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
-
20
-
-
77649260991
-
A view from the Web: BioCarta. Biotech
-
2001;2(3):117-20
-
Nishimura D. A view from the Web: BioCarta. Biotech. Software and Internet Report. 2001;2(3):117-20.
-
Software and Internet Report
-
-
Nishimura, D.1
-
21
-
-
0036578644
-
GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways
-
Dahlquist KD, Salomonis N, Vranizan K, et al. GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways. Nature Genetics. 2002;31:19-.
-
(2002)
Nature Genetics
, vol.31
, pp. 19
-
-
Dahlquist, K.D.1
Salomonis, N.2
Vranizan, K.3
-
22
-
-
38549121882
-
Gramene: A growing plant comparative genomics resource
-
Liang C, Jaiswal P, Hebbard C, et al. Gramene: a growing plant comparative genomics resource. Nucleic Acids Res. 2008;36: D947-953.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Liang, C.1
Jaiswal, P.2
Hebbard, C.3
-
23
-
-
84874019148
-
-
online, Accessed 21 July, 2008. URL
-
The Cancer Cell. Map [online]. Accessed 21 July, 2008. URL: http://cancer.cellmap.org.
-
The Cancer Cell. Map
-
-
-
24
-
-
84888116658
-
-
BioPAX:, online, Accessed 21 July, 2008. URL
-
BioPAX: Biological Pathways Exchange [online]. Accessed 21 July, 2008. URL: http://www.biopax.org.
-
Biological Pathways Exchange
-
-
-
25
-
-
52649168921
-
Implementing an Inference Engine for RDFS/OWL Constructs and User-Defi ned Rules in Oracle
-
Wu Z, Eadon G, Das S, et al. Implementing an Inference Engine for RDFS/OWL Constructs and User-Defi ned Rules in Oracle. IEEE 24th International Conference on Data Engineering: 2008;1239-48.
-
(2008)
IEEE 24th International Conference on Data Engineering
, pp. 1239-1248
-
-
Wu, Z.1
Eadon, G.2
Das, S.3
-
26
-
-
77649241394
-
-
at SemWebCentral [online, Accessed 21 July, 2008. URL
-
Kazuki project at SemWebCentral [online]. Accessed 21 July, 2008. URL: http ://projects.semwebcentral.org/projects/kazuki.
-
Kazuki project
-
-
-
28
-
-
0033957472
-
dbSNP: A database of single nucleotide polymorphisms
-
Smigelski EM, Sirotkin K, Ward M, et al. dbSNP: a database of single nucleotide polymorphisms. Nucleic Acids Res. 2000;28(1):352-5.
-
(2000)
Nucleic Acids Res
, vol.28
, Issue.1
, pp. 352-355
-
-
Smigelski, E.M.1
Sirotkin, K.2
Ward, M.3
-
29
-
-
77649240272
-
-
dom4j: the flexible XML framework for Java [online]. Accessed 21, July, 2008. URL: http://www.dom4j.org.
-
dom4j: the flexible XML framework for Java [online]. Accessed 21, July, 2008. URL: http://www.dom4j.org.
-
-
-
-
30
-
-
0036870713
-
-
McBride B. Jena: A Semantic Web Toolkit. IEEE Internet Computing. 2002;6(6):55-9.
-
McBride B. Jena: A Semantic Web Toolkit. IEEE Internet Computing. 2002;6(6):55-9.
-
-
-
-
31
-
-
57649173613
-
-
online, Accessed 21 July, 2008. URL
-
SPARQL Query Language for RDF [online]. Accessed 21 July, 2008. URL: http://www.w3.org/TR./rdf-sparql-query.
-
SPARQL Query Language for RDF
-
-
-
32
-
-
52949085815
-
State of the nation in data integration for bioinformatics
-
in press
-
Goble C, Stevens R. State of the nation in data integration for bioinformatics. J Biomed Inform. in press. 2008.
-
(2008)
J Biomed Inform
-
-
Goble, C.1
Stevens, R.2
-
33
-
-
0034117360
-
TAMBIS: Transparent access to multiple bioinformatics information sources
-
Stevens R, Baker P, Bechhofer S, et al. TAMBIS: transparent access to multiple bioinformatics information sources. Bioinformatics. 2000;16(2):184-5.
-
(2000)
Bioinformatics
, vol.16
, Issue.2
, pp. 184-185
-
-
Stevens, R.1
Baker, P.2
Bechhofer, S.3
-
34
-
-
2142815705
-
E-neuroscience: Challenges and triumphs in integrating distributed data from molecules to brains
-
Martone ME, Gupta A, Ellisman MH. E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains. Nat Neurosci. 2004;7:467-72.
-
(2004)
Nat Neurosci
, vol.7
, pp. 467-472
-
-
Martone, M.E.1
Gupta, A.2
Ellisman, M.H.3
-
35
-
-
77649260068
-
-
online, Accessed 10 September, 2008. URL
-
Banff2007Demo [online]. Accessed 10 September, 2008. URL: http://esw.w3.org/topic/HCLS/Banff2007Demo.
-
Banff2007Demo
-
-
-
36
-
-
48349143399
-
An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence
-
in press
-
Sahoo SS, Bodenreider O, Rutter JL, et al. An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence. J Biomed Inform. 2008; in press.
-
(2008)
J Biomed Inform
-
-
Sahoo, S.S.1
Bodenreider, O.2
Rutter, J.L.3
-
37
-
-
52949097985
-
An ontology-driven knowledge base for yeast biologists
-
in press
-
Villanueva-Rosales, N, Dumontier, M. yOWL: An ontology-driven knowledge base for yeast biologists. J Biomed Inform. in press. 2008.
-
(2008)
J Biomed Inform
-
-
Rosales, V.1
Dumontier, N.2
yOWL, M.3
-
38
-
-
77649244426
-
Abstract 4110: Allele Frequencies of Functional SNPs in Candidate Genes for Cardiovascular Disease Differ by Ethnicity
-
Kullo I, Ding K. Abstract 4110: Allele Frequencies of Functional SNPs in Candidate Genes for Cardiovascular Disease Differ by Ethnicity. Genetic Epidemiology. 2006;114(II):887.
-
(2006)
Genetic Epidemiology
, vol.114
, Issue.II
, pp. 887
-
-
Kullo, I.1
Ding, K.2
-
39
-
-
0003331563
-
Evolution and the genetics of populations
-
Chicago: Univ Chicago Press
-
Wright S. Evolution and the genetics of populations, vol. 2. The theory of gene frequencies. Chicago: Univ Chicago Press. 1969.
-
(1969)
The theory of gene frequencies
, vol.2
-
-
Wright, S.1
-
40
-
-
0001878825
-
Evolution and the genetics of populations
-
Chicago: Univ Chicago Press
-
Wright S. Evolution and the genetics of populations, vol. 4. Variability with and among natural populations. Chicago: Univ Chicago Press. 1978.
-
(1978)
Variability with and among natural populations
, vol.4
-
-
Wright, S.1
-
41
-
-
0034595516
-
Co-evolution of Proteins with their Interaction Partners
-
Goh CS, Bogan AA, Joachimiak M. Co-evolution of Proteins with their Interaction Partners. J Mol Biol. 2000;299:283-93.
-
(2000)
J Mol Biol
, vol.299
, pp. 283-293
-
-
Goh, C.S.1
Bogan, A.A.2
Joachimiak, M.3
-
42
-
-
24044444786
-
Large-scale SNP analysis reveals clustered and continuous patterns of human genetic variation
-
Shriver MD, Mei R, Parra EJ, et al. Large-scale SNP analysis reveals clustered and continuous patterns of human genetic variation. Hum Genomics. 2005;2(2):81-9.
-
(2005)
Hum Genomics
, vol.2
, Issue.2
, pp. 81-89
-
-
Shriver, M.D.1
Mei, R.2
Parra, E.J.3
-
43
-
-
77649242197
-
-
online, Accessed 21 July, 2008. URL
-
Human Genome Diversity Project [online]. Accessed 21 July, 2008. URL: http://shgc.stanford.edu/hgdp.
-
Human Genome Diversity Project
-
-
-
44
-
-
0345863927
-
The Unified Medical Language System (UMLS): Integrating biomedical terminology
-
Bodenreider O. The Unified Medical Language System (UMLS): integrating biomedical terminology. Nucleic Acids Res. 2004;32: D267-D270.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bodenreider, O.1
-
45
-
-
45849108816
-
semCDI: A Query Formulation for Semantic Data Integration in caBIG
-
Shironoshita EP, Jean-Mary YR, Bradley RM, et al. semCDI: A Query Formulation for Semantic Data Integration in caBIG. JAMIA. 2008;15(4):559-68.
-
(2008)
JAMIA
, vol.15
, Issue.4
, pp. 559-568
-
-
Shironoshita, E.P.1
Jean-Mary, Y.R.2
Bradley, R.M.3
-
46
-
-
84874658134
-
-
online, Accessed 21 July, 2008. URL
-
Pathway Commons [online]. Accessed 21 July, 2008. URL:http://www. pathwaycommons.org.
-
Pathway Commons
-
-
-
47
-
-
33747824847
-
caGrid: Design and implementation of the core architecture of the cancer biomedical informatics grid
-
Saltz J, Oster S, Hastings S, et al. caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid. Bioinformatics. 2006;22(15):1910-6.
-
(2006)
Bioinformatics
, vol.22
, Issue.15
, pp. 1910-1916
-
-
Saltz, J.1
Oster, S.2
Hastings, S.3
|