Dynamic correlation between pressure-induced protein structural transition and water penetration

Journal of Physical Chemistry B

Volumn 114, Issue 6, 2010, Pages 2281-2286

  Imai, Takashi ^a   Sugita, Yuji ^a  

^a RIKEN   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ATMOSPHERIC PRESSURE; ATMOSPHERIC STRUCTURE; CRYSTAL STRUCTURE; HYDROPHOBICITY; METASTABLE PHASES; MOLECULAR DYNAMICS; PROTEINS;

APPLYING PRESSURE; DYNAMIC CORRELATION; EXPLICIT WATER; HIGH PRESSURE; HIGH-PRESSURE STRUCTURES; HYDROPHOBIC CORE; INDUCED PROTEINS; LOW PRESSURES; MAIN CHARACTERISTICS; METASTABLE STRUCTURES; MOLECULAR DYNAMICS SIMULATIONS; PRESSURE SIMULATIONS; SIMULATION STUDIES; STRUCTURAL TRANSITIONS; TIME CORRELATIONS; TIME-SCALES; UBIQUITIN; WATER PENETRATION;

WATER ANALYSIS;

EID: 77649105245     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp909701j     Document Type: Article

References (27)

1. Silva, J. L.; Weber, G. Annu. Rev. Phys. Chem. 1993, 44, 89.
2. Balny, C.; Masson, P.; Heremans, K. Biochim, Biophys. Acta 2002, 1595, 3.
3. Meersman, F.; Dobson, C. M.; Heremans, K. Chem, Stí, Rev. 2006, 35, 908.
4. Akasaka, K. Chem. Rev. 2006, 106, 1814.
5. Bridgman, P. W. J. Biol. Chem. 1914, 19, 511.
6. San Martín, M. F.; Barbosa-Cánovas, G. V.; Swanson, B. G. Crit. Rev. Food. Sci. Nutr. 2002, 42, 627.
7. Hummer, G.; Garde, S.; Garcia, A. E.; Paulaitis, M. E.; Pratt, L. R. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 1552.
8. Paliwal, A.; Asthagiri, D.; Bossev, D. P.; Paulaitis, M. E. Biophys. J. 2004, 87, 3479.
9. Collins, M. D.; Hummer, G.; Quillin, M. L.; Matthews, B. W.; Gruner, S. M. Proc. Natl. Acad., Sci. U.S.A. 2005, 102, 16668.
10. Day, R.; García, A. E. Proteins: Struct. Funct. Bioinf 2008, 70, 1175.
11. Harano, Y.; Kinoshita, M. J. Chem Phys. 2006, 125, 024910.
12. Imai, T.; Ohyama, S.; Kovalenko, A.; Hirata, F. Protein Sci. 2007, 16, 1927.
13. Kitahara, R.; Yokoyama, S.; Akasaka, K. J. Mol. Biol. 2005, 347, 277.
14. Kitahara, R.; Yamada, H.; Akasaka, K. Biochemistry 2001, 40, 13556.
15. Hess, B.; Kutzner, C.; van der Spoel, D.; Lindahl, E.; J. Chem. Theory. Comput., 2008, 4, 435.
16. Hornak, V.; Abel, R.; Okur, A.; Strockbine, B.; Boitberg, A.; Simmerling, C. Proteins: Struct., Fuct. Bioinf. 2006, 65, 712.
17. Sarin, E. J.; Pande, V. S. Biophys. J. 2005, 88, 2472.
18. Vijay-Kumar, S.; Bugg, C. E.; Cook, W. J. Mol. Biol. 1987, 194, 531.
19. Berendsen, H. J. C.; Grigera, J. R.; Straatsma, T. P. J., Phys, Chem. 1987, 91, 6269.
20. Berendsen, H. J. C.; Postma, J. P. M.; DiNoIa, A.; Haak, J. R. J. Chem. Phys. 1984, 87, 3684.
21. Nosé, S. Mol. Phys. 1984, 52, 255.
22. Hoover, W. G. Phys, Rev, A 1985, 31, 1695.
23. Parrinello, M.; Rahman, A. J. Appl, Phys. 1981, 52, 7182.
24. Nosé, S.; Klein, M. L. Mol. Phys. 1983, 50, 1055.
25. Darden, T.; York, D.; Pedersen, L. J. Chem. Phys. 1993, 98, 10089.
26. Essmann, U.; Perera, L.; Berkowitz, M. L.; Darden, T.; Lee, H.; Pedersen, L. G. J. Chem, Phys. 1995, 103, 8577.
27. Sugita, Y.; Okamoto, Y. Chem. Phys. Lett. 1999, 314, 141.