Construction and characterization of a BAC library for sunflower (Helianthus annuus L.)

Euphytica

Volumn 138, Issue 2, 2004, Pages 177-183

  Özdemir, Nehir ^a   Horn, Renate ^b   Friedt, Wolfgang ^b  

^a YILDIZ TECHNICAL UNIVERSITY   (Turkey)

^b JUSTUS LIEBIG UNIVERSITY   (Germany)

Author keywords

BAC library; Helianthus annuus; HMW DNA; PFGE; sunflower

Indexed keywords

BACTERIA (MICROORGANISMS); HELIANTHUS; HELIANTHUS ANNUUS; PERONOSPORA FARINOSA;

EID: 7744247158     PISSN: 00142336     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:EUPH.0000046803.00050.ec     Document Type: Article

References (39)

1. Arumuganathan, K. & E.D. Earle, 1991. Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9: 208-218.
2. Berry, S.T., A.J. Leon, C.C. Hanfrey, P. Challis, A. Burkholz, S.R. Barnes, G.K. Rufener, M. Lee & P.D.S. Caligari, 1995. Molecular marker analysis of Helianthus annuus L. 2. Construction of an RFLP linkage map for cultivated sunflower. Theor Appl Genet 91: 195-199.
3. Bert, P.F., D.T. Labrouhe, J. Philippon, S. Mouzeyar, I. Jouan, P. Nicolas & F. Vear, 2001. Identification of a second linkage group carrying genes controlling resistance to downy mildew (Plasmopara halstedii) in sunflower (Helianthus annuus L.) Theor Appl Genet 103: 992-997.
4. Burke, D.T., G.F. Carle & M.V. Olson, 1987. Cloning of large segments of exogenous DNA into yeast by means of artificial chromosome vectors. Science 236: 806-811.
5. Cai, L., J.F. Taylor, R.A. Wing, D.S. Gallagher, S.S. Woo & S.K. Davis, 1995. Construction and characterization of a bovine artificial chromosome library. Genomics 29: 413-425.
6. Collins, J & B. Hohn, 1978. Cosmids: A type of plasmid gene-cloning vector that is packageable in vitro in bacteriophage lambda heads. Proc. Natl. Acad. Sci. U.S.A. 75: 4242.
7. Cronquist, A., 1988. In: A. Cronquist (Ed.), The Evolution and Classification of Flowering Plants, 2nd edn., Allen Press Inc. Kansas, U.S.A., pp. 146.
8. Flores-Berrios, E., L. Gentzbittel, H. Kayyal, G. Alibert & A. Sarrafi, 2000. AFLP mapping of QTLs for in vitro organogenesis traits using recombinant inbred lines in sunflower (Helianthus annuus L.). Theor Appl Genet 101: 1299-1306.
9. Frijters, A.C.J., Z. Zhang, M. van Damme, G.L. Wang, P.C. Ronald & R.W. Michelmore, 1997. Construction of a bacterial artificial chromosome library containing large EcoRI and HindIII genomic fragments of lettuce. Theor Appl Genet 94: 390-399.
10. Ganal, M.W. & S.D. Tanksley, 1989. Analysis of tomato DNA by pulsed-field gel electrophoresis. Plant Mol Biol Rep 7: 17-27.
11. Ganal, M.W., 1996. Isolation and analysis of high-molecular-weight DNA from plants, In: Nonmammalian Genomic Analysis: A Practical Guide. Academic Press Inc., San Diego, pp. 61-73.
12. Gentzbittel, L., F. Vear, Y.X. Zhang, A. Bervillé & P. Nicolas, 1995. Development of a consensus linkage RFLP map of cultivated sunflower (Helianthus annuus L.). Theor Appl Genet 90: 1079-1086.
13. Gentzbittel, L., S. Mouzeyar, S. Badaoui, E. Mestries, F. Vear, D. Tourvieille de Labrouhe & P. Nicolas, 1998. Cloning of molecular markers for disease resistance in sunflower, Helianthus annuus L. Theor Appl Genet 96: 519-525
14. Gentzbittel, L., E. Mestries, S. Mouzeyar, F. Mazeyrat, S. Badaoui, F. Vear, D. Tourvieille de Labrouhe & P. Nicolas, 1999. A composite map of expressed sequences and phenotypic traits of the sunflower (Helianthus annuus L.) genome. Theor Appl Genet 99: 218-234.
15. Gentzbittel, L., A. Abbott, J.P. Galaud, L. Georgi, F. Fabre, T. Liboz & G. Alibert, 2002. A bacterial artificial chromosome (BAC) library for sunflower, and identification of clones containing genes for putative transmembrane receptors. Mol Gen Genet 266(6): 979-987.
16. Horn, R., B. Kusterer, E. Lazarescu, M. Prufe & W. Friedt, 2003. Molecular mapping of the Rf1 gene restoring pollen fertility in PET-based F1 hybrids in sunflower (Helianthus annuus L.). Theor Appl Genet 106: 599-606.
17. Ioannou, P.A., C.T. Amemiya, J. Garnes, P.M. Kroisel, H. Shizuya, C. Chen, M.A. Batzer & P.J. De Jong, 1994. A new bacteriophage P1-derived vector for the propagation of large human DNA fragments. Nature Genet 6: 84-89.
18. Korell, M., G. Mösges & W. Friedt, 1992. Construction of a sunflower pedigree map. Helia 15: 7-16.
19. Leclercq, P., 1969. Une sterilite male chez le tournesol. Ann Amelior Plant J 1: 185-193.
20. Leon, A.J., M. Lee, G.K. Rufener, S.T. Berry & R.P. Movers, 1995. Use of RFLP markers for genetic linkage analysis of oil percentage in sunflower seeds. Crop Sci 35: 558-564.
21. Mazeyrat, F., S. Mouzeyar, P. Nicolas, T.D. de Labrouhe & G. Ledoigt, 1998. Cloning seuemce and characterization of a sunflower (Helianthus annuus L.) pathogen-induced gene showing sequence homology with auxin-induced genes from plants. Plant Mol Biol 38: 899-903.
22. Mazeyrat, F., S. Mouzeyar, I. Courbou, S. Badaoui, P. Roeckel-Drevet, D.T. de Labrouhe & G. Ledoigt, 1999. Acumulation of defense related transcripts in sunflower hypocotyls (Helianthus annuus L.) infected with Plasmopara halstedii. Eur J Plant Pathol 105: 333-340.
23. Michelmore, R.W., I. Paran & R.V. Kesseli, 1991. Identification of markers linked to disease resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions using segregating populations. Proc Natl Acad Sci U.S.A. 88: 9828-9832.
24. Özdemir, N., R. Horn & W. Friedt, 2002. Isolation of HMW DNA from sunflower (Helianthus annuus L.) for BAC cloning. Plant Mol Biol Rep 20(3): 239-249.
25. Sambrook, J., E.F. Fritsch & T. Maniatis, 1989. Molecular Cloning: A Laboratory Manual, 2nd edn., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
26. Schilling, E.E., 1997. Phylogenetic analysis of Helianthus (Asteraceae) based on chloroplast DNA restriction site data. Theor Appl Genet 94: 925-933.
27. Schmidt, R., J. Putteril, J. West, G. Cnops, F. Robson, G. Coupland & C. Dean, 1994. Analysis of clones carrying repeated DNA sequences in two YAC libraries of Arabidopsis thaliana DNA. Plant J 5: 735-744.
28. Sheng, Y., V. Mancino & B. Birren, 1995. Transformation of Escherichia coli with large DNA molecules by electroporation. Nucl Acids Res 23: 1990-1996.
29. Shizuya, H., B. Birren, U.J. Kim, V. Mancino, T. Slepak, Y. Tachiiri & M. Simon, 1992. Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. Proc Natl Acad Sci U.S.A. 89: 8794-8797.
30. Siculella, L. & J.D. Palmer, 1988. Physical and gene organization of mitochondrial DNA in fertile and male-sterile sunflower. Nucl Acids Res 16: 3787-3799.
31. Tang, S., J.K. Yu, M.B. Slabaugh, D.K. Shintami & S.J. Knapp, 2002. Simple sequence repeat map of the sunflower genome. Theor Appl Genet 105: 1124-1136.
32. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper & M. Zabeau, 1995. AFLP: A new technique for DNA fingerprinting. Nucl Acids Res 23: 4407-4414.
33. Wang, G.L., T.E. Holsten, W.Y. Song, H.P. Wang & P.C. Ronald, 1995. Construction of a rice bacterial artificial chromosome library and identification of clones linked to the Xa-21 disease resistance locus. Plant J 7: 525-533.
34. Wang, G.L., R. Warren, R. Innes, B. Osborne, B. Baker & P.C. Ronald, 1996. Construction of an Arabidopsis BAC library and isolation of clones hybridising with disease-resistance, gene-like sequences. Plant Mol Biol Rep 14: 107-114.
35. Wing, R.A., H.B. Zhang & S.D. Tanksley, 1994. Map-based cloning in crop plants: Tomato as a model system I. Genetic and Physical mapping of jointless. Mol Gen Genet 242: 681-688.
36. Woo, S.S., J. Jiang, B.S. Gill, A.H. Paterson & R.A. Wing, 1994. Construction and characterisation of a bacterial artificial chromosomes library of Sorghum bicolor. Nucl Acid Res 22: 4922-4931.
37. Woo, S.S., V.K. Rastogi, H.B. Zhang, A.H. Paterson, K.P. Schertz & R. Wing, 1995. Isolation of megabase-size DNA from sorghum sand applications for physical mapping and bacterial and yeast artificial chromosome library construction. Plant Mol Biol Rep 13: 82-94.
38. Zhang, H., X. Zhao, X. Ding, A.H. Paterson & R.A. Wing, 1995. Preparation of megabase-size DNA from plant nuclei. Plant J 7: 175-184.
39. Yu, J.K., S. Tang, M.B. Slabaugh, A. Heesacker, M. Cole, M. Herring, J. Soper, F. Han, W.C. Chu, D.M. Webb, L. Thompson, K.J. Edwards, S. Berry, A.J. Leon, M. Grondona, C. Olungu, N. Maes & S.J. Knapp, 2003. Towards a Saturated Molecular Genetic Linkage Map for Cultivated Sunflower Crop Science 43: 367-387.