메뉴 건너뛰기




Volumn 29, Issue 1, 2010, Pages 73-93

Integrating the multiple dimensions of genomic and epigenomic landscapes of cancer

Author keywords

Cancer genome; Integrative analysis; Microarray; Sequencing

Indexed keywords

DNA; HISTONE; MESSENGER RNA; RNA;

EID: 77349120489     PISSN: 01677659     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10555-010-9199-2     Document Type: Review
Times cited : (41)

References (287)
  • 1
    • 17344371740 scopus 로고    scopus 로고
    • High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays
    • 9771718
    • D Pinkel R Segraves D Sudar S Clark I Poole D Kowbel, et al. 1998 High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays Nature Genetics 20 2 207 211 9771718
    • (1998) Nature Genetics , vol.20 , Issue.2 , pp. 207-211
    • Pinkel, D.1    Segraves, R.2    Sudar, D.3    Clark, S.4    Poole, I.5    Kowbel, D.6
  • 3
    • 74949138753 scopus 로고    scopus 로고
    • Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays
    • 19892942
    • R Drmanac AB Sparks MJ Callow AL Halpern NL Burns BG Kermani, et al. 2009 Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays Science 327 5961 78 81 19892942
    • (2009) Science , vol.327 , Issue.5961 , pp. 78-81
    • Drmanac, R.1    Sparks, A.B.2    Callow, M.J.3    Halpern, A.L.4    Burns, N.L.5    Kermani, B.G.6
  • 6
    • 72949119310 scopus 로고    scopus 로고
    • Complex landscapes of somatic rearrangement in human breast cancer genomes
    • 20033038
    • PJ Stephens DJ McBride ML Lin I Varela ED Pleasance JT Simpson, et al. 2009 Complex landscapes of somatic rearrangement in human breast cancer genomes Nature 462 7276 1005 1010 20033038
    • (2009) Nature , vol.462 , Issue.7276 , pp. 1005-1010
    • Stephens, P.J.1    McBride, D.J.2    Lin, M.L.3    Varela, I.4    Pleasance, E.D.5    Simpson, J.T.6
  • 7
    • 54949106292 scopus 로고    scopus 로고
    • SIGMA2: A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes
    • 18840289
    • R Chari BP Coe C Wedseltoft M Benetti IM Wilson EA Vucic, et al. 2008 SIGMA2: a system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes BMC Bioinformatics 9 422 18840289
    • (2008) BMC Bioinformatics , vol.9 , pp. 422
    • Chari, R.1    Coe, B.P.2    Wedseltoft, C.3    Benetti, M.4    Wilson, I.M.5    Vucic, E.A.6
  • 9
    • 34547611743 scopus 로고    scopus 로고
    • ISACGH: A web-based environment for the analysis of Array CGH and gene expression which includes functional profiling
    • 17468499
    • L Conde D Montaner J Burguet-Castell J Tarraga I Medina F Al-Shahrour, et al. 2007 ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling Nucleic Acids Research 35 Web Server issue W81 W85 17468499
    • (2007) Nucleic Acids Research , vol.35 , Issue.WEB SERVER ISSUE
    • Conde, L.1    Montaner, D.2    Burguet-Castell, J.3    Tarraga, J.4    Medina, I.5    Al-Shahrour, F.6
  • 10
    • 33748673977 scopus 로고    scopus 로고
    • VAMP: Visualization and analysis of array-CGH, transcriptome and other molecular profiles
    • 16820431
    • P La Rosa E Viara P Hupe G Pierron S Liva P Neuvial, et al. 2006 VAMP: visualization and analysis of array-CGH, transcriptome and other molecular profiles Bioinformatics 22 17 2066 2073 16820431
    • (2006) Bioinformatics , vol.22 , Issue.17 , pp. 2066-2073
    • La Rosa, P.1    Viara, E.2    Hupe, P.3    Pierron, G.4    Liva, S.5    Neuvial, P.6
  • 13
    • 70349969478 scopus 로고    scopus 로고
    • Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution
    • 19812674
    • SP Shah RD Morin J Khattra L Prentice T Pugh A Burleigh, et al. 2009 Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution Nature 461 7265 809 813 19812674
    • (2009) Nature , vol.461 , Issue.7265 , pp. 809-813
    • Shah, S.P.1    Morin, R.D.2    Khattra, J.3    Prentice, L.4    Pugh, T.5    Burleigh, A.6
  • 14
    • 70450217879 scopus 로고    scopus 로고
    • Human DNA methylomes at base resolution show widespread epigenomic differences
    • 19829295
    • R Lister M Pelizzola RH Dowen RD Hawkins G Hon J Tonti-Filippini, et al. 2009 Human DNA methylomes at base resolution show widespread epigenomic differences Nature 462 7271 315 322 19829295
    • (2009) Nature , vol.462 , Issue.7271 , pp. 315-322
    • Lister, R.1    Pelizzola, M.2    Dowen, R.H.3    Hawkins, R.D.4    Hon, G.5    Tonti-Filippini, J.6
  • 15
    • 55549101623 scopus 로고    scopus 로고
    • DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome
    • 18987736
    • TJ Ley ER Mardis L Ding B Fulton MD McLellan K Chen, et al. 2008 DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome Nature 456 7218 66 72 18987736
    • (2008) Nature , vol.456 , Issue.7218 , pp. 66-72
    • Ley, T.J.1    Mardis, E.R.2    Ding, L.3    Fulton, B.4    McLellan, M.D.5    Chen, K.6
  • 17
    • 40049104784 scopus 로고    scopus 로고
    • Consortium hopes to sequence genome of 1000 volunteers
    • 18244979
    • J Wise 2008 Consortium hopes to sequence genome of 1000 volunteers BMJ 336 7638 237 18244979
    • (2008) BMJ , vol.336 , Issue.7638 , pp. 237
    • Wise, J.1
  • 18
    • 54549108740 scopus 로고    scopus 로고
    • Comprehensive genomic characterization defines human glioblastoma genes and core pathways
    • The Cancer Genome Atlas Research Network
    • The Cancer Genome Atlas Research Network 2008 Comprehensive genomic characterization defines human glioblastoma genes and core pathways Nature 455 7216 1061 1068
    • (2008) Nature , vol.455 , Issue.7216 , pp. 1061-1068
  • 19
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million SNPs
    • 17943122
    • KA Frazer DG Ballinger DR Cox DA Hinds LL Stuve RA Gibbs, et al. 2007 A second generation human haplotype map of over 3.1 million SNPs Nature 449 7164 851 861 17943122
    • (2007) Nature , vol.449 , Issue.7164 , pp. 851-861
    • Frazer, K.A.1    Ballinger, D.G.2    Cox, D.R.3    Hinds, D.A.4    Stuve, L.L.5    Gibbs, R.A.6
  • 22
    • 33845926895 scopus 로고    scopus 로고
    • A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies
    • 17194187
    • DS Shames L Girard B Gao M Sato CM Lewis N Shivapurkar, et al. 2006 A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies PLoS Medicine 3 12 e486 17194187
    • (2006) PLoS Medicine , vol.3 , Issue.12 , pp. 486
    • Shames, D.S.1    Girard, L.2    Gao, B.3    Sato, M.4    Lewis, C.M.5    Shivapurkar, N.6
  • 23
    • 33749993417 scopus 로고    scopus 로고
    • The consensus coding sequences of human breast and colorectal cancers
    • 16959974
    • T Sjoblom S Jones LD Wood DW Parsons J Lin TD Barber, et al. 2006 The consensus coding sequences of human breast and colorectal cancers Science 314 5797 268 274 16959974
    • (2006) Science , vol.314 , Issue.5797 , pp. 268-274
    • Sjoblom, T.1    Jones, S.2    Wood, L.D.3    Parsons, D.W.4    Lin, J.5    Barber, T.D.6
  • 24
    • 33747794587 scopus 로고    scopus 로고
    • Genome-scale loss-of-function screening with a lentiviral RNAi library
    • 16929317
    • DE Root N Hacohen WC Hahn ES Lander DM Sabatini 2006 Genome-scale loss-of-function screening with a lentiviral RNAi library Nat Methods 3 9 715 719 16929317
    • (2006) Nat Methods , vol.3 , Issue.9 , pp. 715-719
    • Root, D.E.1    Hacohen, N.2    Hahn, W.C.3    Lander, E.S.4    Sabatini, D.M.5
  • 25
    • 33644649616 scopus 로고    scopus 로고
    • High-throughput DNA methylation profiling using universal bead arrays
    • 16449502
    • M Bibikova Z Lin L Zhou E Chudin EW Garcia B Wu, et al. 2006 High-throughput DNA methylation profiling using universal bead arrays Genome Research 16 3 383 393 16449502
    • (2006) Genome Research , vol.16 , Issue.3 , pp. 383-393
    • Bibikova, M.1    Lin, Z.2    Zhou, L.3    Chudin, E.4    Garcia, E.W.5    Wu, B.6
  • 26
    • 23044514626 scopus 로고    scopus 로고
    • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    • 16007088
    • M Weber JJ Davies D Wittig EJ Oakeley M Haase WL Lam, et al. 2005 Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells Nature Genetics 37 8 853 862 16007088
    • (2005) Nature Genetics , vol.37 , Issue.8 , pp. 853-862
    • Weber, M.1    Davies, J.J.2    Wittig, D.3    Oakeley, E.J.4    Haase, M.5    Lam, W.L.6
  • 27
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • International HapMap Consortium
    • International HapMap Consortium 2005 A haplotype map of the human genome Nature 437 7063 1299 1320
    • (2005) Nature , vol.437 , Issue.7063 , pp. 1299-1320
  • 28
    • 20444460289 scopus 로고    scopus 로고
    • MicroRNA expression profiles classify human cancers
    • 15944708
    • J Lu G Getz EA Miska E Alvarez-Saavedra J Lamb D Peck, et al. 2005 MicroRNA expression profiles classify human cancers Nature 435 7043 834 838 15944708
    • (2005) Nature , vol.435 , Issue.7043 , pp. 834-838
    • Lu, J.1    Getz, G.2    Miska, E.A.3    Alvarez-Saavedra, E.4    Lamb, J.5    Peck, D.6
  • 30
    • 12144288006 scopus 로고    scopus 로고
    • A resource for large-scale RNA-interference-based screens in mammals
    • 15042091
    • PJ Paddison JM Silva DS Conklin M Schlabach M Li S Aruleba, et al. 2004 A resource for large-scale RNA-interference-based screens in mammals Nature 428 6981 427 431 15042091
    • (2004) Nature , vol.428 , Issue.6981 , pp. 427-431
    • Paddison, P.J.1    Silva, J.M.2    Conklin, D.S.3    Schlabach, M.4    Li, M.5    Aruleba, S.6
  • 31
    • 38849098442 scopus 로고    scopus 로고
    • Cancer proliferation gene discovery through functional genomics
    • 18239126
    • MR Schlabach J Luo NL Solimini G Hu Q Xu MZ Li, et al. 2008 Cancer proliferation gene discovery through functional genomics Science 319 5863 620 624 18239126
    • (2008) Science , vol.319 , Issue.5863 , pp. 620-624
    • Schlabach, M.R.1    Luo, J.2    Solimini, N.L.3    Hu, G.4    Xu, Q.5    Li, M.Z.6
  • 34
    • 3242808027 scopus 로고    scopus 로고
    • Large-scale copy number polymorphism in the human genome
    • 15273396
    • J Sebat B Lakshmi J Troge J Alexander J Young P Lundin, et al. 2004 Large-scale copy number polymorphism in the human genome Science 305 5683 525 528 15273396
    • (2004) Science , vol.305 , Issue.5683 , pp. 525-528
    • Sebat, J.1    Lakshmi, B.2    Troge, J.3    Alexander, J.4    Young, J.5    Lundin, P.6
  • 36
    • 19944376457 scopus 로고    scopus 로고
    • Global identification of human transcribed sequences with genome tiling arrays
    • 15539566
    • P Bertone V Stolc TE Royce JS Rozowsky AE Urban X Zhu, et al. 2004 Global identification of human transcribed sequences with genome tiling arrays Science 306 5705 2242 2246 15539566
    • (2004) Science , vol.306 , Issue.5705 , pp. 2242-2246
    • Bertone, P.1    Stolc, V.2    Royce, T.E.3    Rozowsky, J.S.4    Urban, A.E.5    Zhu, X.6
  • 39
    • 0036275126 scopus 로고    scopus 로고
    • BeadArray technology: Enabling an accurate, cost-effective approach to high-throughput genotyping
    • Oliphant, A., Barker, D. L., Stuelpnagel, J. R., & Chee M. S. (2002). BeadArray technology: enabling an accurate, cost-effective approach to high-throughput genotyping. Biotechniques, Suppl:56-58, 60-51.
    • (2002) Biotechniques , Issue.56-58 SUPPL , pp. 60-51
    • Oliphant, A.1    Barker, D.L.2    Stuelpnagel, J.R.3    Chee, M.S.4
  • 40
    • 0037025173 scopus 로고    scopus 로고
    • Cancer. Addiction to oncogenes-the Achilles heal of cancer
    • 12098689
    • IB Weinstein 2002 Cancer. Addiction to oncogenes-the Achilles heal of cancer Science 297 5578 63 64 12098689
    • (2002) Science , vol.297 , Issue.5578 , pp. 63-64
    • Weinstein, I.B.1
  • 41
    • 44849093562 scopus 로고    scopus 로고
    • Oncogene addiction
    • 18451130 discussion 3080
    • IB Weinstein A Joe 2008 Oncogene addiction Cancer Research 68 9 3077 3080 18451130 discussion 3080
    • (2008) Cancer Research , vol.68 , Issue.9 , pp. 3077-3080
    • Weinstein, I.B.1    Joe, A.2
  • 44
    • 0035054441 scopus 로고    scopus 로고
    • Genome and genetic resources from the cancer genome anatomy project
    • 11257097
    • GJ Riggins RL Strausberg 2001 Genome and genetic resources from the cancer genome anatomy project Human Molecular Genetics 10 7 663 667 11257097
    • (2001) Human Molecular Genetics , vol.10 , Issue.7 , pp. 663-667
    • Riggins, G.J.1    Strausberg, R.L.2
  • 46
    • 0036246455 scopus 로고    scopus 로고
    • Applications of SKY in cancer cytogenetics
    • 12025233
    • JM Bayani JA Squire 2002 Applications of SKY in cancer cytogenetics Cancer Investigation 20 3 373 386 12025233
    • (2002) Cancer Investigation , vol.20 , Issue.3 , pp. 373-386
    • Bayani, J.M.1    Squire, J.A.2
  • 47
    • 0026495364 scopus 로고
    • Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors
    • 1359641
    • A Kallioniemi OP Kallioniemi D Sudar D Rutovitz JW Gray F Waldman, et al. 1992 Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors Science 258 5083 818 821 1359641
    • (1992) Science , vol.258 , Issue.5083 , pp. 818-821
    • Kallioniemi, A.1    Kallioniemi, O.P.2    Sudar, D.3    Rutovitz, D.4    Gray, J.W.5    Waldman, F.6
  • 48
    • 2942536423 scopus 로고    scopus 로고
    • Genetic alteration and gene expression modulation during cancer progression
    • 15035667
    • C Garnis TP Buys WL Lam 2004 Genetic alteration and gene expression modulation during cancer progression Molecular Cancer 3 9 15035667
    • (2004) Molecular Cancer , vol.3 , pp. 9
    • Garnis, C.1    Buys, T.P.2    Lam, W.L.3
  • 49
    • 24344436410 scopus 로고    scopus 로고
    • Genomic imbalances in human leukemia and lymphoma detected by comparative genomic hybridization (Review)
    • 16077907
    • E Gebhart 2005 Genomic imbalances in human leukemia and lymphoma detected by comparative genomic hybridization (Review) International Journal of Oncology 27 3 593 606 16077907
    • (2005) International Journal of Oncology , vol.27 , Issue.3 , pp. 593-606
    • Gebhart, E.1
  • 50
    • 0034133818 scopus 로고    scopus 로고
    • Patterns of genomic imbalances in human solid tumors (Review)
    • 10639584
    • E Gebhart T Liehr 2000 Patterns of genomic imbalances in human solid tumors (Review) International Journal of Oncology 16 2 383 399 10639584
    • (2000) International Journal of Oncology , vol.16 , Issue.2 , pp. 383-399
    • Gebhart, E.1    Liehr, T.2
  • 52
    • 27144540976 scopus 로고    scopus 로고
    • Centrosome amplification, chromosome instability and cancer development
    • 16253756
    • K Fukasawa 2005 Centrosome amplification, chromosome instability and cancer development Cancer Letters 230 1 6 19 16253756
    • (2005) Cancer Letters , vol.230 , Issue.1 , pp. 6-19
    • Fukasawa, K.1
  • 55
    • 0000839280 scopus 로고    scopus 로고
    • Telomere dysfunction provokes regional amplification and deletion in cancer genomes
    • 12204535
    • RC O'Hagan S Chang RS Maser R Mohan SE Artandi L Chin 2002 Telomere dysfunction provokes regional amplification and deletion in cancer genomes Cancer Cell 2 2 149 155 12204535
    • (2002) Cancer Cell , vol.2 , Issue.2 , pp. 149-155
    • O'Hagan, R.C.1    Chang, S.2    Maser, R.S.3    Mohan, R.4    Artandi, S.E.5    Chin, L.6
  • 56
    • 0026647450 scopus 로고
    • Transcription factors, translocations and haematological malignancies
    • 1633508
    • AR Green 1992 Transcription factors, translocations and haematological malignancies Blood Reviews 6 2 118 124 1633508
    • (1992) Blood Reviews , vol.6 , Issue.2 , pp. 118-124
    • Green, A.R.1
  • 57
    • 55249116841 scopus 로고    scopus 로고
    • Chromosomal translocations: Revisited yet again
    • 18779403
    • JD Rowley 2008 Chromosomal translocations: revisited yet again Blood 112 6 2183 2189 18779403
    • (2008) Blood , vol.112 , Issue.6 , pp. 2183-2189
    • Rowley, J.D.1
  • 58
    • 33846376154 scopus 로고    scopus 로고
    • Cytogenetically balanced translocations are associated with focal copy number alterations
    • 17051368
    • SK Watson RJ deLeeuw DE Horsman JA Squire WL Lam 2007 Cytogenetically balanced translocations are associated with focal copy number alterations Human Genetics 120 6 795 805 17051368
    • (2007) Human Genetics , vol.120 , Issue.6 , pp. 795-805
    • Watson, S.K.1    Deleeuw, R.J.2    Horsman, D.E.3    Squire, J.A.4    Lam, W.L.5
  • 60
  • 61
    • 27344451557 scopus 로고    scopus 로고
    • Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer
    • 16254181
    • SA Tomlins DR Rhodes S Perner SM Dhanasekaran R Mehra XW Sun, et al. 2005 Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer Science 310 5748 644 648 16254181
    • (2005) Science , vol.310 , Issue.5748 , pp. 644-648
    • Tomlins, S.A.1    Rhodes, D.R.2    Perner, S.3    Dhanasekaran, S.M.4    Mehra, R.5    Sun, X.W.6
  • 63
    • 34547638047 scopus 로고    scopus 로고
    • Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer
    • 17625570
    • M Soda YL Choi M Enomoto S Takada Y Yamashita S Ishikawa, et al. 2007 Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer Nature 448 7153 561 566 17625570
    • (2007) Nature , vol.448 , Issue.7153 , pp. 561-566
    • Soda, M.1    Choi, Y.L.2    Enomoto, M.3    Takada, S.4    Yamashita, Y.5    Ishikawa, S.6
  • 64
    • 23044466543 scopus 로고    scopus 로고
    • The interactive online SKY/M-FISH & CGH database and the Entrez cancer chromosomes search database: Linkage of chromosomal aberrations with the genome sequence
    • 15934046
    • T Knutsen V Gobu R Knaus H Padilla-Nash M Augustus RL Strausberg, et al. 2005 The interactive online SKY/M-FISH & CGH database and the Entrez cancer chromosomes search database: Linkage of chromosomal aberrations with the genome sequence Genes, Chromosomes, and Cancer 44 1 52 64 15934046
    • (2005) Genes, Chromosomes, and Cancer , vol.44 , Issue.1 , pp. 52-64
    • Knutsen, T.1    Gobu, V.2    Knaus, R.3    Padilla-Nash, H.4    Augustus, M.5    Strausberg, R.L.6
  • 67
    • 75549087826 scopus 로고    scopus 로고
    • COSMIC (the Catalogue of Somatic Mutations in Cancer): A resource to investigate acquired mutations in human cancer
    • 19906727
    • SA Forbes G Tang N Bindal S Bamford E Dawson C Cole, et al. 2010 COSMIC (the Catalogue of Somatic Mutations in Cancer): A resource to investigate acquired mutations in human cancer Nucleic Acids Research 38 D652 D657 19906727
    • (2010) Nucleic Acids Research , vol.38
    • Forbes, S.A.1    Tang, G.2    Bindal, N.3    Bamford, S.4    Dawson, E.5    Cole, C.6
  • 68
    • 13444273394 scopus 로고    scopus 로고
    • Cancer gene expression database (CGED): A database for gene expression profiling with accompanying clinical information of human cancer tissues
    • 15608255
    • K Kato R Yamashita R Matoba M Monden S Noguchi T Takagi, et al. 2005 Cancer gene expression database (CGED): A database for gene expression profiling with accompanying clinical information of human cancer tissues Nucleic Acids Research 33 D533 D536 15608255
    • (2005) Nucleic Acids Research , vol.33
    • Kato, K.1    Yamashita, R.2    Matoba, R.3    Monden, M.4    Noguchi, S.5    Takagi, T.6
  • 69
    • 75549084371 scopus 로고    scopus 로고
    • DbDEPC: A database of differentially expressed proteins in human cancers
    • 19900968
    • H Li Y He G Ding C Wang L Xie Y Li 2010 dbDEPC: a database of differentially expressed proteins in human cancers Nucleic Acids Research 38 D658 D664 19900968
    • (2010) Nucleic Acids Research , vol.38
    • Li, H.1    He, Y.2    Ding, G.3    Wang, C.4    Xie, L.5    Li, Y.6
  • 70
    • 75549091157 scopus 로고    scopus 로고
    • The European Bioinformatics Institute's data resources
    • 19934258
    • C Brooksbank G Cameron J Thornton 2010 The European Bioinformatics Institute's data resources Nucleic Acids Research 38 D17 25 19934258
    • (2010) Nucleic Acids Research , vol.38 , pp. 17-25
    • Brooksbank, C.1    Cameron, G.2    Thornton, J.3
  • 71
    • 0037255084 scopus 로고    scopus 로고
    • Human gene-centric databases at the Weizmann institute of science: GeneCards, UDB, CroW 21 and HORDE
    • 12519968
    • M Safran V Chalifa-Caspi O Shmueli T Olender M Lapidot N Rosen, et al. 2003 Human gene-centric databases at the Weizmann institute of science: GeneCards, UDB, CroW 21 and HORDE Nucleic Acids Research 31 1 142 146 12519968
    • (2003) Nucleic Acids Research , vol.31 , Issue.1 , pp. 142-146
    • Safran, M.1    Chalifa-Caspi, V.2    Shmueli, O.3    Olender, T.4    Lapidot, M.5    Rosen, N.6
  • 74
    • 58149179989 scopus 로고    scopus 로고
    • MiR2Disease: A manually curated database for microRNA deregulation in human disease
    • 18927107
    • Q Jiang Y Wang Y Hao L Juan M Teng X Zhang, et al. 2009 miR2Disease: A manually curated database for microRNA deregulation in human disease Nucleic Acids Research 37 D98 D104 18927107
    • (2009) Nucleic Acids Research , vol.37
    • Jiang, Q.1    Wang, Y.2    Hao, Y.3    Juan, L.4    Teng, M.5    Zhang, X.6
  • 75
    • 44149083586 scopus 로고    scopus 로고
    • MiRDB: A microRNA target prediction and functional annotation database with a wiki interface
    • 18426918
    • X Wang 2008 miRDB: A microRNA target prediction and functional annotation database with a wiki interface RNA 14 6 1012 1017 18426918
    • (2008) RNA , vol.14 , Issue.6 , pp. 1012-1017
    • Wang, X.1
  • 79
    • 33847246805 scopus 로고    scopus 로고
    • Oncomine 3.0: Genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles
    • 17356713
    • DR Rhodes S Kalyana-Sundaram V Mahavisno R Varambally J Yu BB Briggs, et al. 2007 Oncomine 3.0: Genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles Neoplasia 9 2 166 180 17356713
    • (2007) Neoplasia , vol.9 , Issue.2 , pp. 166-180
    • Rhodes, D.R.1    Kalyana-Sundaram, S.2    Mahavisno, V.3    Varambally, R.4    Yu, J.5    Briggs, B.B.6
  • 80
    • 38949218379 scopus 로고    scopus 로고
    • Genomic imbalances in 5918 malignant epithelial tumors: An explorative meta-analysis of chromosomal CGH data
    • 18088415
    • M Baudis 2007 Genomic imbalances in 5918 malignant epithelial tumors: an explorative meta-analysis of chromosomal CGH data BMC Cancer 7 226 18088415
    • (2007) BMC Cancer , vol.7 , pp. 226
    • Baudis, M.1
  • 82
  • 83
    • 33846593467 scopus 로고    scopus 로고
    • SIGMA: A system for integrative genomic microarray analysis of cancer genomes
    • 17192189
    • R Chari WW Lockwood BP Coe A Chu D Macey A Thomson, et al. 2006 SIGMA: A system for integrative genomic microarray analysis of cancer genomes BMC Genomics 7 324 17192189
    • (2006) BMC Genomics , vol.7 , pp. 324
    • Chari, R.1    Lockwood, W.W.2    Coe, B.P.3    Chu, A.4    MacEy, D.5    Thomson, A.6
  • 87
    • 31344457934 scopus 로고    scopus 로고
    • Recent advances in array comparative genomic hybridization technologies and their applications in human genetics
    • 16288307
    • WW Lockwood R Chari B Chi WL Lam 2006 Recent advances in array comparative genomic hybridization technologies and their applications in human genetics European Journal of Human Genetics 14 2 139 148 16288307
    • (2006) European Journal of Human Genetics , vol.14 , Issue.2 , pp. 139-148
    • Lockwood, W.W.1    Chari, R.2    Chi, B.3    Lam, W.L.4
  • 90
    • 33744953369 scopus 로고    scopus 로고
    • Computational methods for the analysis of array comparative genomic hybridization
    • R Chari WW Lockwood WL Lam 2007 Computational methods for the analysis of array comparative genomic hybridization Cancer Information 2 48 58
    • (2007) Cancer Information , vol.2 , pp. 48-58
    • Chari, R.1    Lockwood, W.W.2    Lam, W.L.3
  • 91
    • 2942511488 scopus 로고    scopus 로고
    • SeeGH-a software tool for visualization of whole genome array comparative genomic hybridization data
    • 15040819
    • B Chi RJ DeLeeuw BP Coe C MacAulay WL Lam 2004 SeeGH-a software tool for visualization of whole genome array comparative genomic hybridization data BMC Bioinformatics 5 13 15040819
    • (2004) BMC Bioinformatics , vol.5 , pp. 13
    • Chi, B.1    Deleeuw, R.J.2    Coe, B.P.3    MacAulay, C.4    Lam, W.L.5
  • 93
    • 34147104969 scopus 로고    scopus 로고
    • A faster circular binary segmentation algorithm for the analysis of array CGH data
    • 17234643
    • ES Venkatraman AB Olshen 2007 A faster circular binary segmentation algorithm for the analysis of array CGH data Bioinformatics 23 6 657 663 17234643
    • (2007) Bioinformatics , vol.23 , Issue.6 , pp. 657-663
    • Venkatraman, E.S.1    Olshen, A.B.2
  • 94
    • 10744230160 scopus 로고    scopus 로고
    • High-resolution analysis of DNA copy number using oligonucleotide microarrays
    • 14762065
    • GR Bignell J Huang J Greshock S Watt A Butler S West, et al. 2004 High-resolution analysis of DNA copy number using oligonucleotide microarrays Genome Research 14 2 287 295 14762065
    • (2004) Genome Research , vol.14 , Issue.2 , pp. 287-295
    • Bignell, G.R.1    Huang, J.2    Greshock, J.3    Watt, S.4    Butler, A.5    West, S.6
  • 95
    • 70349242044 scopus 로고    scopus 로고
    • Identification and molecular characterization of recurrent genomic deletions on 7p12 in the IKZF1 gene in a large cohort of BCR-ABL1-positive acute lymphoblastic leukemia patients: On behalf of Gruppo Italiano Malattie Ematologiche dell'Adulto Acute Leukemia Working Party (GIMEMA AL WP)
    • 19589926
    • I Iacobucci CT Storlazzi D Cilloni A Lonetti E Ottaviani S Soverini, et al. 2009 Identification and molecular characterization of recurrent genomic deletions on 7p12 in the IKZF1 gene in a large cohort of BCR-ABL1-positive acute lymphoblastic leukemia patients: On behalf of Gruppo Italiano Malattie Ematologiche dell'Adulto Acute Leukemia Working Party (GIMEMA AL WP) Blood 114 10 2159 2167 19589926
    • (2009) Blood , vol.114 , Issue.10 , pp. 2159-2167
    • Iacobucci, I.1    Storlazzi, C.T.2    Cilloni, D.3    Lonetti, A.4    Ottaviani, E.5    Soverini, S.6
  • 96
    • 75149141075 scopus 로고    scopus 로고
    • Frequent deletion of CDKN2A and recurrent coamplification of KIT, PDGFRA, and KDR in fibrosarcoma of bone-an array comparative genomic hybridization study
    • T Niini JA Lopez-Guerrero S Ninomiya M Guled CM Hattinger F Michelacci, et al. 2009 Frequent deletion of CDKN2A and recurrent coamplification of KIT, PDGFRA, and KDR in fibrosarcoma of bone-an array comparative genomic hybridization study Genes, Chromosomes, and Cancer 49 2 132 143
    • (2009) Genes, Chromosomes, and Cancer , vol.49 , Issue.2 , pp. 132-143
    • Niini, T.1    Lopez-Guerrero, J.A.2    Ninomiya, S.3    Guled, M.4    Hattinger, C.M.5    Michelacci, F.6
  • 97
    • 25844494223 scopus 로고    scopus 로고
    • Analysis of chromosome breakpoints in neuroblastoma at sub-kilobase resolution using fine-tiling oligonucleotide array CGH
    • 16075461
    • RR Selzer TA Richmond NJ Pofahl RD Green PS Eis P Nair, et al. 2005 Analysis of chromosome breakpoints in neuroblastoma at sub-kilobase resolution using fine-tiling oligonucleotide array CGH Genes, Chromosomes, and Cancer 44 3 305 319 16075461
    • (2005) Genes, Chromosomes, and Cancer , vol.44 , Issue.3 , pp. 305-319
    • Selzer, R.R.1    Richmond, T.A.2    Pofahl, N.J.3    Green, R.D.4    Eis, P.S.5    Nair, P.6
  • 98
    • 2342453338 scopus 로고    scopus 로고
    • An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays
    • 15126342
    • X Zhao C Li JG Paez K Chin PA Janne TH Chen, et al. 2004 An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays Cancer Research 64 9 3060 3071 15126342
    • (2004) Cancer Research , vol.64 , Issue.9 , pp. 3060-3071
    • Zhao, X.1    Li, C.2    Paez, J.G.3    Chin, K.4    Janne, P.A.5    Chen, T.H.6
  • 101
    • 33644653015 scopus 로고    scopus 로고
    • Decoding the fine-scale structure of a breast cancer genome and transcriptome
    • 16461635
    • S Volik BJ Raphael G Huang MR Stratton G Bignel J Murnane, et al. 2006 Decoding the fine-scale structure of a breast cancer genome and transcriptome Genome Research 16 3 394 404 16461635
    • (2006) Genome Research , vol.16 , Issue.3 , pp. 394-404
    • Volik, S.1    Raphael, B.J.2    Huang, G.3    Stratton, M.R.4    Bignel, G.5    Murnane, J.6
  • 103
    • 70449698364 scopus 로고    scopus 로고
    • Next-generation gap
    • 19844227
    • JD McPherson 2009 Next-generation gap Nature Methods 6 11 Suppl S2 S5 19844227
    • (2009) Nature Methods , vol.6 , Issue.SUPPL
    • McPherson, J.D.1
  • 104
    • 70349556543 scopus 로고    scopus 로고
    • Personalized copy number and segmental duplication maps using next-generation sequencing
    • 19718026
    • C Alkan JM Kidd T Marques-Bonet G Aksay F Antonacci F Hormozdiari, et al. 2009 Personalized copy number and segmental duplication maps using next-generation sequencing Nature Genetics 41 10 1061 1067 19718026
    • (2009) Nature Genetics , vol.41 , Issue.10 , pp. 1061-1067
    • Alkan, C.1    Kidd, J.M.2    Marques-Bonet, T.3    Aksay, G.4    Antonacci, F.5    Hormozdiari, F.6
  • 106
    • 77950461601 scopus 로고    scopus 로고
    • Origins and functional impact of copy number variation in the human genome
    • doi:10.1038/nature08516
    • Conrad, D. F., Pinto, D., Redon, R., Feuk, L., Gokcumen, O., Zhang, Y., et al. (2009). Origins and functional impact of copy number variation in the human genome. Nature. doi: 10.1038/nature08516
    • (2009) Nature
    • Conrad, D.F.1    Pinto, D.2    Redon, R.3    Feuk, L.4    Gokcumen, O.5    Zhang, Y.6
  • 107
    • 33751349817 scopus 로고    scopus 로고
    • Accurate and reliable high-throughput detection of copy number variation in the human genome
    • 17122085
    • H Fiegler R Redon D Andrews C Scott R Andrews C Carder, et al. 2006 Accurate and reliable high-throughput detection of copy number variation in the human genome Genome Research 16 12 1566 1574 17122085
    • (2006) Genome Research , vol.16 , Issue.12 , pp. 1566-1574
    • Fiegler, H.1    Redon, R.2    Andrews, D.3    Scott, C.4    Andrews, R.5    Carder, C.6
  • 108
    • 39749197456 scopus 로고    scopus 로고
    • Genotype, haplotype and copy-number variation in worldwide human populations
    • 18288195
    • M Jakobsson SW Scholz P Scheet JR Gibbs JM VanLiere HC Fung, et al. 2008 Genotype, haplotype and copy-number variation in worldwide human populations Nature 451 7181 998 1003 18288195
    • (2008) Nature , vol.451 , Issue.7181 , pp. 998-1003
    • Jakobsson, M.1    Scholz, S.W.2    Scheet, P.3    Gibbs, J.R.4    Vanliere, J.M.5    Fung, H.C.6
  • 109
    • 43049143055 scopus 로고    scopus 로고
    • Mapping and sequencing of structural variation from eight human genomes
    • 18451855
    • JM Kidd GM Cooper WF Donahue HS Hayden N Sampas T Graves, et al. 2008 Mapping and sequencing of structural variation from eight human genomes Nature 453 7191 56 64 18451855
    • (2008) Nature , vol.453 , Issue.7191 , pp. 56-64
    • Kidd, J.M.1    Cooper, G.M.2    Donahue, W.F.3    Hayden, H.S.4    Sampas, N.5    Graves, T.6
  • 110
    • 52949141845 scopus 로고    scopus 로고
    • Integrated detection and population-genetic analysis of SNPs and copy number variation
    • 18776908
    • SA McCarroll FG Kuruvilla JM Korn S Cawley J Nemesh A Wysoker, et al. 2008 Integrated detection and population-genetic analysis of SNPs and copy number variation Nature Genetics 40 10 1166 1174 18776908
    • (2008) Nature Genetics , vol.40 , Issue.10 , pp. 1166-1174
    • McCarroll, S.A.1    Kuruvilla, F.G.2    Korn, J.M.3    Cawley, S.4    Nemesh, J.5    Wysoker, A.6
  • 111
    • 69749121852 scopus 로고    scopus 로고
    • High-resolution mapping and analysis of copy number variations in the human genome: A data resource for clinical and research applications
    • 19592680
    • TH Shaikh X Gai JC Perin JT Glessner H Xie K Murphy, et al. 2009 High-resolution mapping and analysis of copy number variations in the human genome: a data resource for clinical and research applications Genome Research 19 9 1682 1690 19592680
    • (2009) Genome Research , vol.19 , Issue.9 , pp. 1682-1690
    • Shaikh, T.H.1    Gai, X.2    Perin, J.C.3    Glessner, J.T.4    Xie, H.5    Murphy, K.6
  • 112
    • 59249105978 scopus 로고    scopus 로고
    • A microhomology-mediated break-induced replication model for the origin of human copy number variation
    • 19180184
    • PJ Hastings G Ira JR Lupski 2009 A microhomology-mediated break-induced replication model for the origin of human copy number variation PLoS Genetics 5 1 e1000327 19180184
    • (2009) PLoS Genetics , vol.5 , Issue.1 , pp. 1000327
    • Hastings, P.J.1    Ira, G.2    Lupski, J.R.3
  • 114
    • 48649093407 scopus 로고    scopus 로고
    • DNA amplification is a ubiquitous mechanism of oncogene activation in lung and other cancers
    • 18391978
    • WW Lockwood R Chari BP Coe L Girard C Macaulay S Lam, et al. 2008 DNA amplification is a ubiquitous mechanism of oncogene activation in lung and other cancers Oncogene 27 33 4615 4624 18391978
    • (2008) Oncogene , vol.27 , Issue.33 , pp. 4615-4624
    • Lockwood, W.W.1    Chari, R.2    Coe, B.P.3    Girard, L.4    MacAulay, C.5    Lam, S.6
  • 116
    • 68349115163 scopus 로고    scopus 로고
    • The breast cancer somatic 'muta-ome': Tackling the complexity
    • 19344493
    • AE Teschendorff C Caldas 2009 The breast cancer somatic 'muta-ome': tackling the complexity Breast Cancer Research 11 2 301 19344493
    • (2009) Breast Cancer Research , vol.11 , Issue.2 , pp. 301
    • Teschendorff, A.E.1    Caldas, C.2
  • 117
    • 39749108733 scopus 로고    scopus 로고
    • High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer
    • 17925008
    • SF Chin AE Teschendorff JC Marioni Y Wang NL Barbosa-Morais NP Thorne, et al. 2007 High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer Genome Biology 8 10 R215 17925008
    • (2007) Genome Biology , vol.8 , Issue.10 , pp. 215
    • Chin, S.F.1    Teschendorff, A.E.2    Marioni, J.C.3    Wang, Y.4    Barbosa-Morais, N.L.5    Thorne, N.P.6
  • 119
    • 70350641014 scopus 로고    scopus 로고
    • SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas
    • 19801978
    • AJ Bass H Watanabe CH Mermel S Yu S Perner RG Verhaak, et al. 2009 SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas Nature Genetics 41 11 1238 1242 19801978
    • (2009) Nature Genetics , vol.41 , Issue.11 , pp. 1238-1242
    • Bass, A.J.1    Watanabe, H.2    Mermel, C.H.3    Yu, S.4    Perner, S.5    Verhaak, R.G.6
  • 120
    • 21844478747 scopus 로고    scopus 로고
    • Integrative genomic analyses identify MITF as a lineage survival oncogene amplified in malignant melanoma
    • 16001072
    • LA Garraway HR Widlund MA Rubin G Getz AJ Berger S Ramaswamy, et al. 2005 Integrative genomic analyses identify MITF as a lineage survival oncogene amplified in malignant melanoma Nature 436 7047 117 122 16001072
    • (2005) Nature , vol.436 , Issue.7047 , pp. 117-122
    • Garraway, L.A.1    Widlund, H.R.2    Rubin, M.A.3    Getz, G.4    Berger, A.J.5    Ramaswamy, S.6
  • 121
    • 36248980204 scopus 로고    scopus 로고
    • Characterizing the cancer genome in lung adenocarcinoma
    • 17982442
    • BA Weir MS Woo G Getz S Perner L Ding R Beroukhim, et al. 2007 Characterizing the cancer genome in lung adenocarcinoma Nature 450 7171 893 898 17982442
    • (2007) Nature , vol.450 , Issue.7171 , pp. 893-898
    • Weir, B.A.1    Woo, M.S.2    Getz, G.3    Perner, S.4    Ding, L.5    Beroukhim, R.6
  • 123
  • 124
    • 73349116605 scopus 로고    scopus 로고
    • Genetic variations as cancer prognostic markers: Review and update
    • 19639655
    • S Savas G Liu 2009 Genetic variations as cancer prognostic markers: Review and update Human Mutation 30 10 1369 1377 19639655
    • (2009) Human Mutation , vol.30 , Issue.10 , pp. 1369-1377
    • Savas, S.1    Liu, G.2
  • 125
    • 67349209853 scopus 로고    scopus 로고
    • Next-generation DNA sequencing techniques
    • 19429539
    • WJ Ansorge 2009 Next-generation DNA sequencing techniques New Biotechnology 25 4 195 203 19429539
    • (2009) New Biotechnology , vol.25 , Issue.4 , pp. 195-203
    • Ansorge, W.J.1
  • 131
    • 33748948902 scopus 로고    scopus 로고
    • Altered promoter usage characterizes monoallelic transcription arising with ERBB2 amplification in human breast cancers
    • 16883574
    • CC Benz V Fedele F Xu B Ylstra D Ginzinger M Yu, et al. 2006 Altered promoter usage characterizes monoallelic transcription arising with ERBB2 amplification in human breast cancers Genes, Chromosomes, and Cancer 45 11 983 994 16883574
    • (2006) Genes, Chromosomes, and Cancer , vol.45 , Issue.11 , pp. 983-994
    • Benz, C.C.1    Fedele, V.2    Xu, F.3    Ylstra, B.4    Ginzinger, D.5    Yu, M.6
  • 133
    • 36248987862 scopus 로고    scopus 로고
    • SNP-Array genotyping and spectral karyotyping reveal uniparental disomy as early mutational event in MSS- and MSI-colorectal cancer cell lines
    • 18000373
    • R Melcher O Al-Taie T Kudlich E Hartmann S Maisch C Steinlein, et al. 2007 SNP-Array genotyping and spectral karyotyping reveal uniparental disomy as early mutational event in MSS- and MSI-colorectal cancer cell lines Cytogenetic and Genome Research 118 2-4 214 221 18000373
    • (2007) Cytogenetic and Genome Research , vol.118 , Issue.24 , pp. 214-221
    • Melcher, R.1    Al-Taie, O.2    Kudlich, T.3    Hartmann, E.4    Maisch, S.5    Steinlein, C.6
  • 134
    • 34247477205 scopus 로고    scopus 로고
    • Polymorphisms, mutations, and amplification of the EGFR gene in non-small cell lung cancers
    • 17455987
    • M Nomura H Shigematsu L Li M Suzuki T Takahashi P Estess, et al. 2007 Polymorphisms, mutations, and amplification of the EGFR gene in non-small cell lung cancers PLoS Medicine 4 4 e125 17455987
    • (2007) PLoS Medicine , vol.4 , Issue.4 , pp. 125
    • Nomura, M.1    Shigematsu, H.2    Li, L.3    Suzuki, M.4    Takahashi, T.5    Estess, P.6
  • 135
    • 70350532521 scopus 로고    scopus 로고
    • Lung adenocarcinoma with EGFR amplification has distinct clinicopathologic and molecular features in never-smokers
    • 19826035
    • LM Sholl BY Yeap AJ Iafrate AJ Holmes-Tisch YP Chou MT Wu, et al. 2009 Lung adenocarcinoma with EGFR amplification has distinct clinicopathologic and molecular features in never-smokers Cancer Research 69 21 8341 8348 19826035
    • (2009) Cancer Research , vol.69 , Issue.21 , pp. 8341-8348
    • Sholl, L.M.1    Yeap, B.Y.2    Iafrate, A.J.3    Holmes-Tisch, A.J.4    Chou, Y.P.5    Wu, M.T.6
  • 136
    • 70449433271 scopus 로고    scopus 로고
    • Oncogene mutations, copy number gains and mutant allele specific imbalance (MASI) frequently occur together in tumor cells
    • 19826477
    • J Soh N Okumura WW Lockwood H Yamamoto H Shigematsu W Zhang, et al. 2009 Oncogene mutations, copy number gains and mutant allele specific imbalance (MASI) frequently occur together in tumor cells PLoS ONE 4 10 e7464 19826477
    • (2009) PLoS ONE , vol.4 , Issue.10 , pp. 7464
    • Soh, J.1    Okumura, N.2    Lockwood, W.W.3    Yamamoto, H.4    Shigematsu, H.5    Zhang, W.6
  • 137
    • 59149099298 scopus 로고    scopus 로고
    • Emerging paradigms in cancer genetics: Some important findings from high-density single nucleotide polymorphism array studies
    • 19155292
    • MD Bacolod GS Schemmann SF Giardina P Paty DA Notterman F Barany 2009 Emerging paradigms in cancer genetics: some important findings from high-density single nucleotide polymorphism array studies Cancer Research 69 3 723 727 19155292
    • (2009) Cancer Research , vol.69 , Issue.3 , pp. 723-727
    • Bacolod, M.D.1    Schemmann, G.S.2    Giardina, S.F.3    Paty, P.4    Notterman, D.A.5    Barany, F.6
  • 138
    • 0034098812 scopus 로고    scopus 로고
    • Mechanisms leading to uniparental disomy and their clinical consequences
    • 10797485
    • WP Robinson 2000 Mechanisms leading to uniparental disomy and their clinical consequences Bioessays 22 5 452 459 10797485
    • (2000) Bioessays , vol.22 , Issue.5 , pp. 452-459
    • Robinson, W.P.1
  • 141
    • 43249121366 scopus 로고    scopus 로고
    • SNP array karyotyping allows for the detection of uniparental disomy and cryptic chromosomal abnormalities in MDS/MPD-U and MPD
    • 18030353
    • LP Gondek AJ Dunbar H Szpurka MA McDevitt JP Maciejewski 2007 SNP array karyotyping allows for the detection of uniparental disomy and cryptic chromosomal abnormalities in MDS/MPD-U and MPD PLoS ONE 2 11 e1225 18030353
    • (2007) PLoS ONE , vol.2 , Issue.11 , pp. 1225
    • Gondek, L.P.1    Dunbar, A.J.2    Szpurka, H.3    McDevitt, M.A.4    MacIejewski, J.P.5
  • 142
    • 70449715477 scopus 로고    scopus 로고
    • New lesions detected by single nucleotide polymorphism array-based chromosomal analysis have important clinical impact in acute myeloid leukemia
    • 19770377
    • RV Tiu LP Gondek CL O'Keefe J Huh MA Sekeres P Elson, et al. 2009 New lesions detected by single nucleotide polymorphism array-based chromosomal analysis have important clinical impact in acute myeloid leukemia Journal of Clinical Oncology 27 31 5219 5226 19770377
    • (2009) Journal of Clinical Oncology , vol.27 , Issue.31 , pp. 5219-5226
    • Tiu, R.V.1    Gondek, L.P.2    O'Keefe, C.L.3    Huh, J.4    Sekeres, M.A.5    Elson, P.6
  • 143
    • 34347229790 scopus 로고    scopus 로고
    • Highly sensitive method for genomewide detection of allelic composition in nonpaired, primary tumor specimens by use of affymetrix single-nucleotide- polymorphism genotyping microarrays
    • 17564968
    • G Yamamoto Y Nannya M Kato M Sanada RL Levine N Kawamata, et al. 2007 Highly sensitive method for genomewide detection of allelic composition in nonpaired, primary tumor specimens by use of affymetrix single-nucleotide- polymorphism genotyping microarrays American Journal of Human Genetics 81 1 114 126 17564968
    • (2007) American Journal of Human Genetics , vol.81 , Issue.1 , pp. 114-126
    • Yamamoto, G.1    Nannya, Y.2    Kato, M.3    Sanada, M.4    Levine, R.L.5    Kawamata, N.6
  • 144
    • 59649114350 scopus 로고    scopus 로고
    • Uniparentalism in sporadic colorectal cancer is independent of imprint status, and coordinate for chromosomes 14 and 18
    • 19215787
    • HK Darbary SS Dutt SJ Sait NJ Nowak RE Heinaman DL Stoler, et al. 2009 Uniparentalism in sporadic colorectal cancer is independent of imprint status, and coordinate for chromosomes 14 and 18 Cancer Genetics and Cytogenetics 189 2 77 86 19215787
    • (2009) Cancer Genetics and Cytogenetics , vol.189 , Issue.2 , pp. 77-86
    • Darbary, H.K.1    Dutt, S.S.2    Sait, S.J.3    Nowak, N.J.4    Heinaman, R.E.5    Stoler, D.L.6
  • 145
    • 67650401377 scopus 로고    scopus 로고
    • Frequent CBL mutations associated with 11q acquired uniparental disomy in myeloproliferative neoplasms
    • 19387008
    • FH Grand CE Hidalgo-Curtis T Ernst K Zoi C Zoi C McGuire, et al. 2009 Frequent CBL mutations associated with 11q acquired uniparental disomy in myeloproliferative neoplasms Blood 113 24 6182 6192 19387008
    • (2009) Blood , vol.113 , Issue.24 , pp. 6182-6192
    • Grand, F.H.1    Hidalgo-Curtis, C.E.2    Ernst, T.3    Zoi, K.4    Zoi, C.5    McGuire, C.6
  • 147
    • 67650091214 scopus 로고    scopus 로고
    • Identified hidden genomic changes in mantle cell lymphoma using high-resolution single nucleotide polymorphism genomic array
    • 19477219
    • N Kawamata S Ogawa S Gueller SH Ross T Huynh J Chen, et al. 2009 Identified hidden genomic changes in mantle cell lymphoma using high-resolution single nucleotide polymorphism genomic array Experimental Hematology 37 8 937 946 19477219
    • (2009) Experimental Hematology , vol.37 , Issue.8 , pp. 937-946
    • Kawamata, N.1    Ogawa, S.2    Gueller, S.3    Ross, S.H.4    Huynh, T.5    Chen, J.6
  • 148
    • 74949108515 scopus 로고    scopus 로고
    • Mutations of e3 ubiquitin ligase cbl family members constitute a novel common pathogenic lesion in myeloid malignancies
    • 19901108
    • H Makishima H Cazzolli H Szpurka A Dunbar R Tiu J Huh, et al. 2009 Mutations of e3 ubiquitin ligase cbl family members constitute a novel common pathogenic lesion in myeloid malignancies Journal of Clinical Oncology 27 36 6109 6116 19901108
    • (2009) Journal of Clinical Oncology , vol.27 , Issue.36 , pp. 6109-6116
    • Makishima, H.1    Cazzolli, H.2    Szpurka, H.3    Dunbar, A.4    Tiu, R.5    Huh, J.6
  • 150
    • 66349133436 scopus 로고    scopus 로고
    • High-resolution genomic copy number profiling of glioblastoma multiforme by single nucleotide polymorphism DNA microarray
    • 19435819
    • D Yin S Ogawa N Kawamata P Tunici G Finocchiaro M Eoli, et al. 2009 High-resolution genomic copy number profiling of glioblastoma multiforme by single nucleotide polymorphism DNA microarray Mol Cancer Res 7 5 665 677 19435819
    • (2009) Mol Cancer Res , vol.7 , Issue.5 , pp. 665-677
    • Yin, D.1    Ogawa, S.2    Kawamata, N.3    Tunici, P.4    Finocchiaro, G.5    Eoli, M.6
  • 151
    • 34249111848 scopus 로고    scopus 로고
    • Allelic imbalances and microdeletions affecting the PTPRD gene in cutaneous squamous cell carcinomas detected using single nucleotide polymorphism microarray analysis
    • 17420988
    • KJ Purdie SR Lambert MT Teh T Chaplin G Molloy M Raghavan, et al. 2007 Allelic imbalances and microdeletions affecting the PTPRD gene in cutaneous squamous cell carcinomas detected using single nucleotide polymorphism microarray analysis Genes, Chromosomes, and Cancer 46 7 661 669 17420988
    • (2007) Genes, Chromosomes, and Cancer , vol.46 , Issue.7 , pp. 661-669
    • Purdie, K.J.1    Lambert, S.R.2    Teh, M.T.3    Chaplin, T.4    Molloy, G.5    Raghavan, M.6
  • 152
    • 70349864986 scopus 로고    scopus 로고
    • Chromosomal abnormalities and novel disease-related regions in progression from Barrett's esophagus to esophageal adenocarcinoma
    • T Akagi T Ito M Kato Z Jin Y Cheng T Kan, et al. 2009 Chromosomal abnormalities and novel disease-related regions in progression from Barrett's esophagus to esophageal adenocarcinoma International Journal of Cancer 125 10 2349 2359
    • (2009) International Journal of Cancer , vol.125 , Issue.10 , pp. 2349-2359
    • Akagi, T.1    Ito, T.2    Kato, M.3    Jin, Z.4    Cheng, Y.5    Kan, T.6
  • 154
    • 46249117780 scopus 로고    scopus 로고
    • Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation
    • 18568024
    • K Kerkel A Spadola E Yuan J Kosek L Jiang E Hod, et al. 2008 Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation Nature Genetics 40 7 904 908 18568024
    • (2008) Nature Genetics , vol.40 , Issue.7 , pp. 904-908
    • Kerkel, K.1    Spadola, A.2    Yuan, E.3    Kosek, J.4    Jiang, L.5    Hod, E.6
  • 155
    • 33847065486 scopus 로고    scopus 로고
    • The epigenomics of cancer
    • 17320506
    • PA Jones SB Baylin 2007 The epigenomics of cancer Cell 128 4 683 692 17320506
    • (2007) Cell , vol.128 , Issue.4 , pp. 683-692
    • Jones, P.A.1    Baylin, S.B.2
  • 156
    • 40849139208 scopus 로고    scopus 로고
    • Epigenetics in cancer
    • 18337604
    • M Esteller 2008 Epigenetics in cancer New England Journal of Medicine 358 11 1148 1159 18337604
    • (2008) New England Journal of Medicine , vol.358 , Issue.11 , pp. 1148-1159
    • Esteller, M.1
  • 157
    • 34249275353 scopus 로고    scopus 로고
    • Phenotypic plasticity and the epigenetics of human disease
    • 17522677
    • AP Feinberg 2007 Phenotypic plasticity and the epigenetics of human disease Nature 447 7143 433 440 17522677
    • (2007) Nature , vol.447 , Issue.7143 , pp. 433-440
    • Feinberg, A.P.1
  • 158
    • 42449102138 scopus 로고    scopus 로고
    • Epigenetics of cancer progression
    • 18370850
    • EA Vucic CJ Brown WL Lam 2008 Epigenetics of cancer progression Pharmacogenomics 9 2 215 234 18370850
    • (2008) Pharmacogenomics , vol.9 , Issue.2 , pp. 215-234
    • Vucic, E.A.1    Brown, C.J.2    Lam, W.L.3
  • 159
    • 0023848637 scopus 로고
    • Reduced genomic 5-methylcytosine content in human colonic neoplasia
    • 3342396
    • AP Feinberg CW Gehrke KC Kuo M Ehrlich 1988 Reduced genomic 5-methylcytosine content in human colonic neoplasia Cancer Research 48 5 1159 1161 3342396
    • (1988) Cancer Research , vol.48 , Issue.5 , pp. 1159-1161
    • Feinberg, A.P.1    Gehrke, C.W.2    Kuo, K.C.3    Ehrlich, M.4
  • 160
    • 1042278765 scopus 로고    scopus 로고
    • The history of cancer epigenetics
    • 14732866
    • AP Feinberg B Tycko 2004 The history of cancer epigenetics Nature Reviews Cancer 4 2 143 153 14732866
    • (2004) Nature Reviews Cancer , vol.4 , Issue.2 , pp. 143-153
    • Feinberg, A.P.1    Tycko, B.2
  • 161
    • 61549112191 scopus 로고    scopus 로고
    • Epigenomics and breast cancer
    • 19072646
    • PK Lo S Sukumar 2008 Epigenomics and breast cancer Pharmacogenomics 9 12 1879 1902 19072646
    • (2008) Pharmacogenomics , vol.9 , Issue.12 , pp. 1879-1902
    • Lo, P.K.1    Sukumar, S.2
  • 163
    • 10344260184 scopus 로고    scopus 로고
    • CpG island methylator phenotype in cancer
    • 15573120
    • JP Issa 2004 CpG island methylator phenotype in cancer Nature Reviews Cancer 4 12 988 993 15573120
    • (2004) Nature Reviews Cancer , vol.4 , Issue.12 , pp. 988-993
    • Issa, J.P.1
  • 165
    • 4644264667 scopus 로고    scopus 로고
    • Global methylation profiling of lung cancer identifies novel methylated genes
    • 11571631
    • Z Dai RR Lakshmanan WG Zhu DJ Smiraglia LJ Rush MC Fruhwald, et al. 2001 Global methylation profiling of lung cancer identifies novel methylated genes Neoplasia 3 4 314 323 11571631
    • (2001) Neoplasia , vol.3 , Issue.4 , pp. 314-323
    • Dai, Z.1    Lakshmanan, R.R.2    Zhu, W.G.3    Smiraglia, D.J.4    Rush, L.J.5    Fruhwald, M.C.6
  • 166
    • 0035829691 scopus 로고    scopus 로고
    • Silencing of HTR1B and reduced expression of EDN1 in human lung cancers, revealed by methylation-sensitive representational difference analysis
    • 11709722
    • D Takai Y Yagi K Wakazono N Ohishi Y Morita T Sugimura, et al. 2001 Silencing of HTR1B and reduced expression of EDN1 in human lung cancers, revealed by methylation-sensitive representational difference analysis Oncogene 20 51 7505 7513 11709722
    • (2001) Oncogene , vol.20 , Issue.51 , pp. 7505-7513
    • Takai, D.1    Yagi, Y.2    Wakazono, K.3    Ohishi, N.4    Morita, Y.5    Sugimura, T.6
  • 170
    • 4043086483 scopus 로고    scopus 로고
    • A DNA microarray-based methylation-sensitive (MS)-AFLP hybridization method for genetic and epigenetic analyses
    • 15146327
    • F Yamamoto M Yamamoto 2004 A DNA microarray-based methylation-sensitive (MS)-AFLP hybridization method for genetic and epigenetic analyses Mol Genet Genomics 271 6 678 686 15146327
    • (2004) Mol Genet Genomics , vol.271 , Issue.6 , pp. 678-686
    • Yamamoto, F.1    Yamamoto, M.2
  • 171
    • 47949103491 scopus 로고    scopus 로고
    • Genome-wide profiling of methylated promoters in pancreatic adenocarcinoma
    • 18535405
    • N Omura CP Li A Li SM Hong K Walter A Jimeno, et al. 2008 Genome-wide profiling of methylated promoters in pancreatic adenocarcinoma Cancer Biol Ther 7 7 1146 1156 18535405
    • (2008) Cancer Biol Ther , vol.7 , Issue.7 , pp. 1146-1156
    • Omura, N.1    Li, C.P.2    Li, A.3    Hong, S.M.4    Walter, K.5    Jimeno, A.6
  • 172
    • 0035710246 scopus 로고    scopus 로고
    • DNA methylation analysis by MethyLight technology
    • 11846615
    • BN Trinh TI Long PW Laird 2001 DNA methylation analysis by MethyLight technology Methods 25 4 456 462 11846615
    • (2001) Methods , vol.25 , Issue.4 , pp. 456-462
    • Trinh, B.N.1    Long, T.I.2    Laird, P.W.3
  • 174
    • 44949259146 scopus 로고    scopus 로고
    • Widespread epigenetic abnormalities suggest a broad DNA methylation erasure defect in abnormal human sperm
    • 18074014
    • S Houshdaran VK Cortessis K Siegmund A Yang PW Laird RZ Sokol 2007 Widespread epigenetic abnormalities suggest a broad DNA methylation erasure defect in abnormal human sperm PLoS ONE 2 12 e1289 18074014
    • (2007) PLoS ONE , vol.2 , Issue.12 , pp. 1289
    • Houshdaran, S.1    Cortessis, V.K.2    Siegmund, K.3    Yang, A.4    Laird, P.W.5    Sokol, R.Z.6
  • 177
    • 34047274820 scopus 로고    scopus 로고
    • Large-scale CpG methylation analysis identifies novel candidate genes and reveals methylation hotspots in acute lymphoblastic leukemia
    • 17363581
    • KH Taylor KE Pena-Hernandez JW Davis GL Arthur DJ Duff H Shi, et al. 2007 Large-scale CpG methylation analysis identifies novel candidate genes and reveals methylation hotspots in acute lymphoblastic leukemia Cancer Research 67 6 2617 2625 17363581
    • (2007) Cancer Research , vol.67 , Issue.6 , pp. 2617-2625
    • Taylor, K.H.1    Pena-Hernandez, K.E.2    Davis, J.W.3    Arthur, G.L.4    Duff, D.J.5    Shi, H.6
  • 178
    • 34047116826 scopus 로고    scopus 로고
    • Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
    • 17334365
    • M Weber I Hellmann MB Stadler L Ramos S Paabo M Rebhan, et al. 2007 Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome Nature Genetics 39 4 457 466 17334365
    • (2007) Nature Genetics , vol.39 , Issue.4 , pp. 457-466
    • Weber, M.1    Hellmann, I.2    Stadler, M.B.3    Ramos, L.4    Paabo, S.5    Rebhan, M.6
  • 179
    • 27744443057 scopus 로고    scopus 로고
    • Methylated-CpG island recovery assay: A new technique for the rapid detection of methylated-CpG islands in cancer
    • 16025148
    • T Rauch GP Pfeifer 2005 Methylated-CpG island recovery assay: a new technique for the rapid detection of methylated-CpG islands in cancer Laboratory Investigation 85 9 1172 1180 16025148
    • (2005) Laboratory Investigation , vol.85 , Issue.9 , pp. 1172-1180
    • Rauch, T.1    Pfeifer, G.P.2
  • 180
    • 37549066863 scopus 로고    scopus 로고
    • Discovery of epigenetically silenced genes by methylated DNA immunoprecipitation in colon cancer cells
    • 18089774
    • FV Jacinto E Ballestar S Ropero M Esteller 2007 Discovery of epigenetically silenced genes by methylated DNA immunoprecipitation in colon cancer cells Cancer Research 67 24 11481 11486 18089774
    • (2007) Cancer Research , vol.67 , Issue.24 , pp. 11481-11486
    • Jacinto, F.V.1    Ballestar, E.2    Ropero, S.3    Esteller, M.4
  • 181
    • 0348134871 scopus 로고    scopus 로고
    • Methyl-CpG binding proteins identify novel sites of epigenetic inactivation in human cancer
    • 14633992
    • E Ballestar MF Paz L Valle S Wei MF Fraga J Espada, et al. 2003 Methyl-CpG binding proteins identify novel sites of epigenetic inactivation in human cancer EMBO Journal 22 23 6335 6345 14633992
    • (2003) EMBO Journal , vol.22 , Issue.23 , pp. 6335-6345
    • Ballestar, E.1    Paz, M.F.2    Valle, L.3    Wei, S.4    Fraga, M.F.5    Espada, J.6
  • 182
    • 77449127799 scopus 로고    scopus 로고
    • MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome
    • doi:10.1093/nar/gkp992
    • Serre, D., Lee, B. H., & Ting, A. H. (2009). MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome. Nucleic Acids Research. doi: 10.1093/nar/gkp992.
    • (2009) Nucleic Acids Research
    • Serre, D.1    Lee, B.H.2    Ting, A.H.3
  • 183
    • 46949098742 scopus 로고    scopus 로고
    • A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
    • 18612301
    • TA Down VK Rakyan DJ Turner P Flicek H Li E Kulesha, et al. 2008 A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis Nature Biotechnology 26 7 779 785 18612301
    • (2008) Nature Biotechnology , vol.26 , Issue.7 , pp. 779-785
    • Down, T.A.1    Rakyan, V.K.2    Turner, D.J.3    Flicek, P.4    Li, H.5    Kulesha, E.6
  • 185
    • 53549104134 scopus 로고    scopus 로고
    • MEDME: An experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment
    • 18765822
    • M Pelizzola Y Koga AE Urban M Krauthammer S Weissman R Halaban, et al. 2008 MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment Genome Research 18 10 1652 1659 18765822
    • (2008) Genome Research , vol.18 , Issue.10 , pp. 1652-1659
    • Pelizzola, M.1    Koga, Y.2    Urban, A.E.3    Krauthammer, M.4    Weissman, S.5    Halaban, R.6
  • 186
    • 70350710509 scopus 로고    scopus 로고
    • Development of a novel output value for quantitative assessment in methylated DNA immunoprecipitation-CpG island microarray analysis
    • 19767598
    • S Yamashita K Hosoya K Gyobu H Takeshima T Ushijima 2009 Development of a novel output value for quantitative assessment in methylated DNA immunoprecipitation-CpG island microarray analysis DNA Research 16 5 275 286 19767598
    • (2009) DNA Research , vol.16 , Issue.5 , pp. 275-286
    • Yamashita, S.1    Hosoya, K.2    Gyobu, K.3    Takeshima, H.4    Ushijima, T.5
  • 187
    • 59149084538 scopus 로고    scopus 로고
    • The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
    • 19151715
    • RA Irizarry C Ladd-Acosta B Wen Z Wu C Montano P Onyango, et al. 2009 The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores Nature Genetics 41 2 178 186 19151715
    • (2009) Nature Genetics , vol.41 , Issue.2 , pp. 178-186
    • Irizarry, R.A.1    Ladd-Acosta, C.2    Wen, B.3    Wu, Z.4    Montano, C.5    Onyango, P.6
  • 188
    • 7544231794 scopus 로고    scopus 로고
    • Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells
    • MC Lorincz DR Dickerson M Schmitt M Groudine 2004 Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells Nature Structural & Molecular Biology 11 11 1068 1075
    • (2004) Nature Structural & Molecular Biology , vol.11 , Issue.11 , pp. 1068-1075
    • Lorincz, M.C.1    Dickerson, D.R.2    Schmitt, M.3    Groudine, M.4
  • 189
    • 33646369393 scopus 로고    scopus 로고
    • Epigenetic remodeling in colorectal cancer results in coordinate gene suppression across an entire chromosome band
    • 16642018
    • J Frigola J Song C Stirzaker RA Hinshelwood MA Peinado SJ Clark 2006 Epigenetic remodeling in colorectal cancer results in coordinate gene suppression across an entire chromosome band Nature Genetics 38 5 540 549 16642018
    • (2006) Nature Genetics , vol.38 , Issue.5 , pp. 540-549
    • Frigola, J.1    Song, J.2    Stirzaker, C.3    Hinshelwood, R.A.4    Peinado, M.A.5    Clark, S.J.6
  • 190
    • 34247373911 scopus 로고    scopus 로고
    • Pharmacologic inhibition of epigenetic modifications, coupled with gene expression profiling, reveals novel targets of aberrant DNA methylation and histone deacetylation in lung cancer
    • 17043644
    • S Zhong CR Fields N Su YX Pan KD Robertson 2007 Pharmacologic inhibition of epigenetic modifications, coupled with gene expression profiling, reveals novel targets of aberrant DNA methylation and histone deacetylation in lung cancer Oncogene 26 18 2621 2634 17043644
    • (2007) Oncogene , vol.26 , Issue.18 , pp. 2621-2634
    • Zhong, S.1    Fields, C.R.2    Su, N.3    Pan, Y.X.4    Robertson, K.D.5
  • 191
    • 66449121652 scopus 로고    scopus 로고
    • Finding the fifth base: Genome-wide sequencing of cytosine methylation
    • 19273618
    • R Lister JR Ecker 2009 Finding the fifth base: genome-wide sequencing of cytosine methylation Genome Research 19 6 959 966 19273618
    • (2009) Genome Research , vol.19 , Issue.6 , pp. 959-966
    • Lister, R.1    Ecker, J.R.2
  • 192
    • 70450169678 scopus 로고    scopus 로고
    • Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns
    • 19776032
    • HM Byun KD Siegmund F Pan DJ Weisenberger G Kanel PW Laird, et al. 2009 Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns Human Molecular Genetics 18 24 4808 4817 19776032
    • (2009) Human Molecular Genetics , vol.18 , Issue.24 , pp. 4808-4817
    • Byun, H.M.1    Siegmund, K.D.2    Pan, F.3    Weisenberger, D.J.4    Kanel, G.5    Laird, P.W.6
  • 194
    • 64349106730 scopus 로고    scopus 로고
    • Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming
    • 19330000
    • J Deng R Shoemaker B Xie A Gore EM LeProust J Antosiewicz-Bourget, et al. 2009 Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming Nature Biotechnology 27 4 353 360 19330000
    • (2009) Nature Biotechnology , vol.27 , Issue.4 , pp. 353-360
    • Deng, J.1    Shoemaker, R.2    Xie, B.3    Gore, A.4    Leproust, E.M.5    Antosiewicz-Bourget, J.6
  • 197
    • 0344321897 scopus 로고    scopus 로고
    • Impact of aging on DNA methylation
    • 12726774
    • B Richardson 2003 Impact of aging on DNA methylation Ageing Research Reviews 2 3 245 261 12726774
    • (2003) Ageing Research Reviews , vol.2 , Issue.3 , pp. 245-261
    • Richardson, B.1
  • 200
    • 0028905376 scopus 로고
    • Frequent loss of imprinting of the H19 gene is often associated with its overexpression in human lung cancers
    • 7700644
    • M Kondo H Suzuki R Ueda H Osada K Takagi T Takahashi 1995 Frequent loss of imprinting of the H19 gene is often associated with its overexpression in human lung cancers Oncogene 10 6 1193 1198 7700644
    • (1995) Oncogene , vol.10 , Issue.6 , pp. 1193-1198
    • Kondo, M.1    Suzuki, H.2    Ueda, R.3    Osada, H.4    Takagi, K.5    Takahashi, T.6
  • 202
  • 206
    • 0033385702 scopus 로고    scopus 로고
    • CpG methylation reduces genomic instability
    • 10574701
    • R Rizwana PJ Hahn 1999 CpG methylation reduces genomic instability Journal of Cell Science 112 Pt 24 4513 4519 10574701
    • (1999) Journal of Cell Science , vol.112 , Issue.PART 24 , pp. 4513-4519
    • Rizwana, R.1    Hahn, P.J.2
  • 208
    • 0031662164 scopus 로고    scopus 로고
    • Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
    • 9771701
    • CP Walsh JR Chaillet TH Bestor 1998 Transcription of IAP endogenous retroviruses is constrained by cytosine methylation Nature Genetics 20 2 116 117 9771701
    • (1998) Nature Genetics , vol.20 , Issue.2 , pp. 116-117
    • Walsh, C.P.1    Chaillet, J.R.2    Bestor, T.H.3
  • 209
    • 9944233064 scopus 로고    scopus 로고
    • Distinctive pattern of LINE-1 methylation level in normal tissues and the association with carcinogenesis
    • 15480421
    • K Chalitchagorn S Shuangshoti N Hourpai N Kongruttanachok P Tangkijvanich D Thong-ngam, et al. 2004 Distinctive pattern of LINE-1 methylation level in normal tissues and the association with carcinogenesis Oncogene 23 54 8841 8846 15480421
    • (2004) Oncogene , vol.23 , Issue.54 , pp. 8841-8846
    • Chalitchagorn, K.1    Shuangshoti, S.2    Hourpai, N.3    Kongruttanachok, N.4    Tangkijvanich, P.5    Thong-Ngam, D.6
  • 211
    • 0019827634 scopus 로고
    • Chromatin structure of endogenous retroviral genes and activation by an inhibitor of DNA methylation
    • 6166864
    • M Groudine R Eisenman H Weintraub 1981 Chromatin structure of endogenous retroviral genes and activation by an inhibitor of DNA methylation Nature 292 5821 311 317 6166864
    • (1981) Nature , vol.292 , Issue.5821 , pp. 311-317
    • Groudine, M.1    Eisenman, R.2    Weintraub, H.3
  • 213
    • 33749039999 scopus 로고    scopus 로고
    • Genome-wide hypomethylation in human glioblastomas associated with specific copy number alteration, methylenetetrahydrofolate reductase allele status, and increased proliferation
    • 16951158
    • B Cadieux TT Ching SR VandenBerg JF Costello 2006 Genome-wide hypomethylation in human glioblastomas associated with specific copy number alteration, methylenetetrahydrofolate reductase allele status, and increased proliferation Cancer Research 66 17 8469 8476 16951158
    • (2006) Cancer Research , vol.66 , Issue.17 , pp. 8469-8476
    • Cadieux, B.1    Ching, T.T.2    Vandenberg, S.R.3    Costello, J.F.4
  • 214
    • 0037037787 scopus 로고    scopus 로고
    • Tumor suppressor genes on chromosome 3p involved in the pathogenesis of lung and other cancers
    • 12362274
    • ER Zabarovsky MI Lerman JD Minna 2002 Tumor suppressor genes on chromosome 3p involved in the pathogenesis of lung and other cancers Oncogene 21 45 6915 6935 12362274
    • (2002) Oncogene , vol.21 , Issue.45 , pp. 6915-6935
    • Zabarovsky, E.R.1    Lerman, M.I.2    Minna, J.D.3
  • 215
  • 217
    • 4544250024 scopus 로고    scopus 로고
    • Gene-promoter hypermethylation as a biomarker in lung cancer
    • 15343277
    • SA Belinsky 2004 Gene-promoter hypermethylation as a biomarker in lung cancer Nature Reviews Cancer 4 9 707 717 15343277
    • (2004) Nature Reviews Cancer , vol.4 , Issue.9 , pp. 707-717
    • Belinsky, S.A.1
  • 218
    • 40949141564 scopus 로고    scopus 로고
    • Promoter methylation of genes in and around the candidate lung cancer susceptibility locus 6q23-25
    • 18339850
    • M Tessema R Willink K Do YY Yu W Yu EO Machida, et al. 2008 Promoter methylation of genes in and around the candidate lung cancer susceptibility locus 6q23-25 Cancer Research 68 6 1707 1714 18339850
    • (2008) Cancer Research , vol.68 , Issue.6 , pp. 1707-1714
    • Tessema, M.1    Willink, R.2    Do, K.3    Yu, Y.Y.4    Yu, W.5    MacHida, E.O.6
  • 219
    • 65549104157 scopus 로고    scopus 로고
    • Histone modifications at human enhancers reflect global cell-type-specific gene expression
    • 19295514
    • ND Heintzman GC Hon RD Hawkins P Kheradpour A Stark LF Harp, et al. 2009 Histone modifications at human enhancers reflect global cell-type-specific gene expression Nature 459 7243 108 112 19295514
    • (2009) Nature , vol.459 , Issue.7243 , pp. 108-112
    • Heintzman, N.D.1    Hon, G.C.2    Hawkins, R.D.3    Kheradpour, P.4    Stark, A.5    Harp, L.F.6
  • 220
    • 41649121741 scopus 로고    scopus 로고
    • Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells
    • 18347325
    • VM Komashko LG Acevedo SL Squazzo SS Iyengar A Rabinovich H O'Geen, et al. 2008 Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells Genome Research 18 4 521 532 18347325
    • (2008) Genome Research , vol.18 , Issue.4 , pp. 521-532
    • Komashko, V.M.1    Acevedo, L.G.2    Squazzo, S.L.3    Iyengar, S.S.4    Rabinovich, A.5    O'Geen, H.6
  • 221
    • 61849178049 scopus 로고    scopus 로고
    • Genome-wide profiling of histone h3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis
    • 19262738
    • XS Ke Y Qu K Rostad WC Li B Lin OJ Halvorsen, et al. 2009 Genome-wide profiling of histone h3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis PLoS ONE 4 3 e4687 19262738
    • (2009) PLoS ONE , vol.4 , Issue.3 , pp. 4687
    • Ke, X.S.1    Qu, Y.2    Rostad, K.3    Li, W.C.4    Lin, B.5    Halvorsen, O.J.6
  • 222
    • 44349131472 scopus 로고    scopus 로고
    • Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation
    • 18488029
    • Y Kondo L Shen AS Cheng S Ahmed Y Boumber C Charo, et al. 2008 Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation Nature Genetics 40 6 741 750 18488029
    • (2008) Nature Genetics , vol.40 , Issue.6 , pp. 741-750
    • Kondo, Y.1    Shen, L.2    Cheng, A.S.3    Ahmed, S.4    Boumber, Y.5    Charo, C.6
  • 223
    • 36349017912 scopus 로고    scopus 로고
    • A polycomb repression signature in metastatic prostate cancer predicts cancer outcome
    • 18006806
    • J Yu DR Rhodes SA Tomlins X Cao G Chen R Mehra, et al. 2007 A polycomb repression signature in metastatic prostate cancer predicts cancer outcome Cancer Research 67 22 10657 10663 18006806
    • (2007) Cancer Research , vol.67 , Issue.22 , pp. 10657-10663
    • Yu, J.1    Rhodes, D.R.2    Tomlins, S.A.3    Cao, X.4    Chen, G.5    Mehra, R.6
  • 224
    • 34250014379 scopus 로고    scopus 로고
    • Diverse histone modifications on histone 3 lysine 9 and their relation to DNA methylation in specifying gene silencing
    • 17524140
    • J Wu SH Wang D Potter JC Liu LT Smith YZ Wu, et al. 2007 Diverse histone modifications on histone 3 lysine 9 and their relation to DNA methylation in specifying gene silencing BMC Genomics 8 131 17524140
    • (2007) BMC Genomics , vol.8 , pp. 131
    • Wu, J.1    Wang, S.H.2    Potter, D.3    Liu, J.C.4    Smith, L.T.5    Wu, Y.Z.6
  • 225
    • 54549083228 scopus 로고    scopus 로고
    • H3K79 methylation profiles define murine and human MLL-AF4 leukemias
    • 18977325
    • AV Krivtsov Z Feng ME Lemieux J Faber S Vempati AU Sinha, et al. 2008 H3K79 methylation profiles define murine and human MLL-AF4 leukemias Cancer Cell 14 5 355 368 18977325
    • (2008) Cancer Cell , vol.14 , Issue.5 , pp. 355-368
    • Krivtsov, A.V.1    Feng, Z.2    Lemieux, M.E.3    Faber, J.4    Vempati, S.5    Sinha, A.U.6
  • 226
    • 68749084845 scopus 로고    scopus 로고
    • Integrated expression profiling and ChIP-seq analyses of the growth inhibition response program of the androgen receptor
    • 19668381
    • B Lin J Wang X Hong X Yan D Hwang JH Cho, et al. 2009 Integrated expression profiling and ChIP-seq analyses of the growth inhibition response program of the androgen receptor PLoS ONE 4 8 e6589 19668381
    • (2009) PLoS ONE , vol.4 , Issue.8 , pp. 6589
    • Lin, B.1    Wang, J.2    Hong, X.3    Yan, X.4    Hwang, D.5    Cho, J.H.6
  • 227
    • 70449103609 scopus 로고    scopus 로고
    • An oestrogen-receptor-alpha-bound human chromatin interactome
    • 19890323
    • MJ Fullwood MH Liu YF Pan J Liu H Xu YB Mohamed, et al. 2009 An oestrogen-receptor-alpha-bound human chromatin interactome Nature 462 7269 58 64 19890323
    • (2009) Nature , vol.462 , Issue.7269 , pp. 58-64
    • Fullwood, M.J.1    Liu, M.H.2    Pan, Y.F.3    Liu, J.4    Xu, H.5    Mohamed, Y.B.6
  • 228
    • 54049087012 scopus 로고    scopus 로고
    • Evolving strategies for global gene expression analysis of cancer
    • 18680120
    • BP Coe R Chari WW Lockwood WL Lam 2008 Evolving strategies for global gene expression analysis of cancer Journal of Cellular Physiology 217 3 590 597 18680120
    • (2008) Journal of Cellular Physiology , vol.217 , Issue.3 , pp. 590-597
    • Coe, B.P.1    Chari, R.2    Lockwood, W.W.3    Lam, W.L.4
  • 229
    • 0242667828 scopus 로고    scopus 로고
    • Analysing differential gene expression in cancer
    • 14668817
    • P Liang AB Pardee 2003 Analysing differential gene expression in cancer Nature Reviews Cancer 3 11 869 876 14668817
    • (2003) Nature Reviews Cancer , vol.3 , Issue.11 , pp. 869-876
    • Liang, P.1    Pardee, A.B.2
  • 230
    • 34447555782 scopus 로고    scopus 로고
    • Mining gene expression profiles: Expression signatures as cancer phenotypes
    • 17607306
    • JR Nevins A Potti 2007 Mining gene expression profiles: Expression signatures as cancer phenotypes Nature Reviews Genetics 8 8 601 609 17607306
    • (2007) Nature Reviews Genetics , vol.8 , Issue.8 , pp. 601-609
    • Nevins, J.R.1    Potti, A.2
  • 232
    • 14944343419 scopus 로고    scopus 로고
    • Microarray analyses reveal strong influence of DNA copy number alterations on the transcriptional patterns in pancreatic cancer: Implications for the interpretation of genomic amplifications
    • 15688027
    • M Heidenblad D Lindgren JA Veltman T Jonson EH Mahlamaki L Gorunova, et al. 2005 Microarray analyses reveal strong influence of DNA copy number alterations on the transcriptional patterns in pancreatic cancer: implications for the interpretation of genomic amplifications Oncogene 24 10 1794 1801 15688027
    • (2005) Oncogene , vol.24 , Issue.10 , pp. 1794-1801
    • Heidenblad, M.1    Lindgren, D.2    Veltman, J.A.3    Jonson, T.4    Mahlamaki, E.H.5    Gorunova, L.6
  • 234
    • 2442637585 scopus 로고    scopus 로고
    • High-resolution analysis of gene copy number alterations in human prostate cancer using CGH on cDNA microarrays: Impact of copy number on gene expression
    • 15153336
    • M Wolf S Mousses S Hautaniemi R Karhu P Huusko M Allinen, et al. 2004 High-resolution analysis of gene copy number alterations in human prostate cancer using CGH on cDNA microarrays: Impact of copy number on gene expression Neoplasia 6 3 240 247 15153336
    • (2004) Neoplasia , vol.6 , Issue.3 , pp. 240-247
    • Wolf, M.1    Mousses, S.2    Hautaniemi, S.3    Karhu, R.4    Huusko, P.5    Allinen, M.6
  • 236
    • 59149096811 scopus 로고    scopus 로고
    • Prediction of clinical outcome in multiple lung cancer cohorts by integrative genomics: Implications for chemotherapy selection
    • 19176396
    • P Broet S Camilleri-Broet S Zhang M Alifano D Bangarusamy M Battistella, et al. 2009 Prediction of clinical outcome in multiple lung cancer cohorts by integrative genomics: Implications for chemotherapy selection Cancer Research 69 3 1055 1062 19176396
    • (2009) Cancer Research , vol.69 , Issue.3 , pp. 1055-1062
    • Broet, P.1    Camilleri-Broet, S.2    Zhang, S.3    Alifano, M.4    Bangarusamy, D.5    Battistella, M.6
  • 237
    • 33845191779 scopus 로고    scopus 로고
    • Genomic and transcriptional aberrations linked to breast cancer pathophysiologies
    • 17157792
    • K Chin S DeVries J Fridlyand PT Spellman R Roydasgupta WL Kuo, et al. 2006 Genomic and transcriptional aberrations linked to breast cancer pathophysiologies Cancer Cell 10 6 529 541 17157792
    • (2006) Cancer Cell , vol.10 , Issue.6 , pp. 529-541
    • Chin, K.1    Devries, S.2    Fridlyand, J.3    Spellman, P.T.4    Roydasgupta, R.5    Kuo, W.L.6
  • 238
    • 77953120975 scopus 로고    scopus 로고
    • An integrative genomic and transcriptomic analysis reveals molecular pathways and networks regulated by copy number aberrations in basal-like, HER2 and luminal cancers
    • doi: s00280-009-1073-y/s10549-009-0501-3
    • Natrajan, R., Weigelt, B., Mackay, A., Geyer, F. C., Grigoriadis, A., Tan, D. S., et al. (2009). An integrative genomic and transcriptomic analysis reveals molecular pathways and networks regulated by copy number aberrations in basal-like, HER2 and luminal cancers. Breast Cancer Research and Treatment. doi: s00280-009-1073-y/s10549-009-0501-3.
    • (2009) Breast Cancer Research and Treatment
    • Natrajan, R.1    Weigelt, B.2    MacKay, A.3    Geyer, F.C.4    Grigoriadis, A.5    Tan, D.S.6
  • 239
    • 50849104285 scopus 로고    scopus 로고
    • Mechanisms of microRNA deregulation in human cancer
    • 18719391
    • S Deng GA Calin CM Croce G Coukos L Zhang 2008 Mechanisms of microRNA deregulation in human cancer Cell Cycle 7 17 2643 2646 18719391
    • (2008) Cell Cycle , vol.7 , Issue.17 , pp. 2643-2646
    • Deng, S.1    Calin, G.A.2    Croce, C.M.3    Coukos, G.4    Zhang, L.5
  • 240
    • 65949104847 scopus 로고    scopus 로고
    • Analysis of DNA copy number alterations in ovarian serous tumors identifies new molecular genetic changes in low-grade and high-grade carcinomas
    • 19383911
    • KT Kuo B Guan Y Feng TL Mao X Chen N Jinawath, et al. 2009 Analysis of DNA copy number alterations in ovarian serous tumors identifies new molecular genetic changes in low-grade and high-grade carcinomas Cancer Research 69 9 4036 4042 19383911
    • (2009) Cancer Research , vol.69 , Issue.9 , pp. 4036-4042
    • Kuo, K.T.1    Guan, B.2    Feng, Y.3    Mao, T.L.4    Chen, X.5    Jinawath, N.6
  • 241
    • 65349160295 scopus 로고    scopus 로고
    • Integrative high-resolution microarray analysis of human myeloma cell lines reveals deregulated miRNA expression associated with allelic imbalances and gene expression profiles
    • 19306352
    • M Lionetti L Agnelli L Mosca S Fabris A Andronache K Todoerti, et al. 2009 Integrative high-resolution microarray analysis of human myeloma cell lines reveals deregulated miRNA expression associated with allelic imbalances and gene expression profiles Genes, Chromosomes, and Cancer 48 6 521 531 19306352
    • (2009) Genes, Chromosomes, and Cancer , vol.48 , Issue.6 , pp. 521-531
    • Lionetti, M.1    Agnelli, L.2    Mosca, L.3    Fabris, S.4    Andronache, A.5    Todoerti, K.6
  • 244
    • 33750370444 scopus 로고    scopus 로고
    • MicroRNA signatures in human cancers
    • 17060945
    • GA Calin CM Croce 2006 MicroRNA signatures in human cancers Nature Reviews Cancer 6 11 857 866 17060945
    • (2006) Nature Reviews Cancer , vol.6 , Issue.11 , pp. 857-866
    • Calin, G.A.1    Croce, C.M.2
  • 246
    • 0043165092 scopus 로고    scopus 로고
    • Analysis of microsatellite instability and X-inactivation in ovarian borderline tumors lacking numerical abnormalities by comparative genomic hybridization
    • 12935925
    • NG Wolf C Farver FW Abdul-Karim S Schwartz 2003 Analysis of microsatellite instability and X-inactivation in ovarian borderline tumors lacking numerical abnormalities by comparative genomic hybridization Cancer Genetics and Cytogenetics 145 2 133 138 12935925
    • (2003) Cancer Genetics and Cytogenetics , vol.145 , Issue.2 , pp. 133-138
    • Wolf, N.G.1    Farver, C.2    Abdul-Karim, F.W.3    Schwartz, S.4
  • 247
    • 70349145414 scopus 로고    scopus 로고
    • MicroRNA dynamics in the stages of tumorigenesis correlate with hallmark capabilities of cancer
    • 19759263
    • P Olson J Lu H Zhang A Shai MG Chun Y Wang, et al. 2009 MicroRNA dynamics in the stages of tumorigenesis correlate with hallmark capabilities of cancer Genes and Development 23 18 2152 2165 19759263
    • (2009) Genes and Development , vol.23 , Issue.18 , pp. 2152-2165
    • Olson, P.1    Lu, J.2    Zhang, H.3    Shai, A.4    Chun, M.G.5    Wang, Y.6
  • 249
    • 59449097723 scopus 로고    scopus 로고
    • How epigenetics can explain human metastasis: A new role for microRNAs
    • 19177007
    • A Lujambio M Esteller 2009 How epigenetics can explain human metastasis: A new role for microRNAs Cell Cycle 8 3 377 382 19177007
    • (2009) Cell Cycle , vol.8 , Issue.3 , pp. 377-382
    • Lujambio, A.1    Esteller, M.2
  • 251
    • 38349191617 scopus 로고    scopus 로고
    • CpG island hypermethylation of tumor suppressor microRNAs in human cancer
    • 17581274
    • A Lujambio M Esteller 2007 CpG island hypermethylation of tumor suppressor microRNAs in human cancer Cell Cycle 6 12 1455 1459 17581274
    • (2007) Cell Cycle , vol.6 , Issue.12 , pp. 1455-1459
    • Lujambio, A.1    Esteller, M.2
  • 252
    • 33847763576 scopus 로고    scopus 로고
    • Genetic unmasking of an epigenetically silenced microRNA in human cancer cells
    • 17308079
    • A Lujambio S Ropero E Ballestar MF Fraga C Cerrato F Setien, et al. 2007 Genetic unmasking of an epigenetically silenced microRNA in human cancer cells Cancer Research 67 4 1424 1429 17308079
    • (2007) Cancer Research , vol.67 , Issue.4 , pp. 1424-1429
    • Lujambio, A.1    Ropero, S.2    Ballestar, E.3    Fraga, M.F.4    Cerrato, C.5    Setien, F.6
  • 254
    • 65549107328 scopus 로고    scopus 로고
    • Identification of interactive networks of gene expression associated with osteosarcoma oncogenesis by integrated molecular profiling
    • 19286668
    • B Sadikovic M Yoshimoto S Chilton-MacNeill P Thorner JA Squire M Zielenska 2009 Identification of interactive networks of gene expression associated with osteosarcoma oncogenesis by integrated molecular profiling Human Molecular Genetics 18 11 1962 1975 19286668
    • (2009) Human Molecular Genetics , vol.18 , Issue.11 , pp. 1962-1975
    • Sadikovic, B.1    Yoshimoto, M.2    Chilton-Macneill, S.3    Thorner, P.4    Squire, J.A.5    Zielenska, M.6
  • 255
    • 24944517170 scopus 로고    scopus 로고
    • Oncogene amplification in the proximal part of chromosome 6 in rat endometrial adenocarcinoma as revealed by combined BAC/PAC FISH, chromosome painting, zoo-FISH, and allelotyping
    • 15942940
    • T Adamovic F Trosso L Roshani L Andersson G Petersen S Rajaei, et al. 2005 Oncogene amplification in the proximal part of chromosome 6 in rat endometrial adenocarcinoma as revealed by combined BAC/PAC FISH, chromosome painting, zoo-FISH, and allelotyping Genes, Chromosomes, and Cancer 44 2 139 153 15942940
    • (2005) Genes, Chromosomes, and Cancer , vol.44 , Issue.2 , pp. 139-153
    • Adamovic, T.1    Trosso, F.2    Roshani, L.3    Andersson, L.4    Petersen, G.5    Rajaei, S.6
  • 256
    • 77649191945 scopus 로고    scopus 로고
    • Expression of nucleoside transporters, deoxycitidine kinase, ribonucleotide reductase regulatory subunits, and gemcitabine catabolic enzymes in primary ovarian cancer
    • doi:s00280-009-1073-y/s00280-009-1073-y
    • Ferrandina, G., Mey, V., Nannizzi, S., Ricciardi, S., Petrillo, M., Ferlini, C., et al. (2009). Expression of nucleoside transporters, deoxycitidine kinase, ribonucleotide reductase regulatory subunits, and gemcitabine catabolic enzymes in primary ovarian cancer. Cancer Chemotherapy and Pharmacology. doi: s00280-009-1073-y/s00280-009-1073-y.
    • (2009) Cancer Chemotherapy and Pharmacology
    • Ferrandina, G.1    Mey, V.2    Nannizzi, S.3    Ricciardi, S.4    Petrillo, M.5    Ferlini, C.6
  • 257
    • 52249109610 scopus 로고    scopus 로고
    • Identification of biomarkers of adrenocortical carcinoma using genomewide gene expression profiling
    • 18794420 discussion 846
    • GG Fernandez-Ranvier J Weng RF Yeh E Khanafshar I Suh C Barker, et al. 2008 Identification of biomarkers of adrenocortical carcinoma using genomewide gene expression profiling Archives of Surgery 143 9 841 846 18794420 discussion 846
    • (2008) Archives of Surgery , vol.143 , Issue.9 , pp. 841-846
    • Fernandez-Ranvier, G.G.1    Weng, J.2    Yeh, R.F.3    Khanafshar, E.4    Suh, I.5    Barker, C.6
  • 258
    • 57049162405 scopus 로고    scopus 로고
    • Putative direct and indirect Wnt targets identified through consistent gene expression changes in APC-mutant intestinal adenomas from humans and mice
    • 18782851
    • S Segditsas O Sieber M Deheragoda P East A Rowan R Jeffery, et al. 2008 Putative direct and indirect Wnt targets identified through consistent gene expression changes in APC-mutant intestinal adenomas from humans and mice Human Molecular Genetics 17 24 3864 3875 18782851
    • (2008) Human Molecular Genetics , vol.17 , Issue.24 , pp. 3864-3875
    • Segditsas, S.1    Sieber, O.2    Deheragoda, M.3    East, P.4    Rowan, A.5    Jeffery, R.6
  • 260
    • 66149151809 scopus 로고    scopus 로고
    • MUC1-induced transcriptional programs associated with tumorigenesis predict outcome in breast and lung cancer
    • 19318547
    • NN Khodarev SP Pitroda MA Beckett DM MacDermed L Huang DW Kufe, et al. 2009 MUC1-induced transcriptional programs associated with tumorigenesis predict outcome in breast and lung cancer Cancer Research 69 7 2833 2837 19318547
    • (2009) Cancer Research , vol.69 , Issue.7 , pp. 2833-2837
    • Khodarev, N.N.1    Pitroda, S.P.2    Beckett, M.A.3    MacDermed, D.M.4    Huang, L.5    Kufe, D.W.6
  • 262
    • 65649086486 scopus 로고    scopus 로고
    • Defining genomic alteration boundaries for a combined small cell and non-small cell lung carcinoma
    • 19179901
    • TP Buys S Aviel-Ronen TK Waddell WL Lam MS Tsao 2009 Defining genomic alteration boundaries for a combined small cell and non-small cell lung carcinoma Journal of Thoracic Oncology 4 2 227 239 19179901
    • (2009) Journal of Thoracic Oncology , vol.4 , Issue.2 , pp. 227-239
    • Buys, T.P.1    Aviel-Ronen, S.2    Waddell, T.K.3    Lam, W.L.4    Tsao, M.S.5
  • 263
    • 47649128110 scopus 로고    scopus 로고
    • Tiling array-CGH for the assessment of genomic similarities among synchronous unilateral and bilateral invasive breast cancer tumor pairs
    • 18616792
    • S Brommesson G Jonsson C Strand D Grabau P Malmstrom M Ringner, et al. 2008 Tiling array-CGH for the assessment of genomic similarities among synchronous unilateral and bilateral invasive breast cancer tumor pairs BMC Clinical Pathology 8 6 18616792
    • (2008) BMC Clinical Pathology , vol.8 , pp. 6
    • Brommesson, S.1    Jonsson, G.2    Strand, C.3    Grabau, D.4    Malmstrom, P.5    Ringner, M.6
  • 264
    • 34447343152 scopus 로고    scopus 로고
    • Genetic analysis of multifocal superficial urothelial cancers by array-based comparative genomic hybridisation
    • 17579624
    • H Kawanishi T Takahashi M Ito Y Matsui J Watanabe N Ito, et al. 2007 Genetic analysis of multifocal superficial urothelial cancers by array-based comparative genomic hybridisation British Journal of Cancer 97 2 260 266 17579624
    • (2007) British Journal of Cancer , vol.97 , Issue.2 , pp. 260-266
    • Kawanishi, H.1    Takahashi, T.2    Ito, M.3    Matsui, Y.4    Watanabe, J.5    Ito, N.6
  • 265
    • 52649089087 scopus 로고    scopus 로고
    • The use of array-based comparative genomic hybridization (a-CGH) to distinguish metastatic from primary synchronous carcinomas of the ovary and the uterus
    • 18643851
    • P Mhawech-Fauceglia H Rai N Nowak RT Cheney K Rodabaugh S Lele, et al. 2008 The use of array-based comparative genomic hybridization (a-CGH) to distinguish metastatic from primary synchronous carcinomas of the ovary and the uterus Histopathology 53 4 490 495 18643851
    • (2008) Histopathology , vol.53 , Issue.4 , pp. 490-495
    • Mhawech-Fauceglia, P.1    Rai, H.2    Nowak, N.3    Cheney, R.T.4    Rodabaugh, K.5    Lele, S.6
  • 267
    • 33745593694 scopus 로고    scopus 로고
    • Synchronous multiple primary lung cancers with different response to gefitinib
    • 16787685
    • BY Ryoo II Na SH Yang JS Koh CH Kim JC Lee 2006 Synchronous multiple primary lung cancers with different response to gefitinib Lung Cancer 53 2 245 248 16787685
    • (2006) Lung Cancer , vol.53 , Issue.2 , pp. 245-248
    • Ryoo, B.Y.1    Na, I.I.2    Yang, S.H.3    Koh, J.S.4    Kim, C.H.5    Lee, J.C.6
  • 269
    • 16444380716 scopus 로고    scopus 로고
    • Clinical application of array-based comparative genomic hybridization to define the relationship between multiple synchronous tumors
    • 15696129
    • CV Wa S DeVries YY Chen FM Waldman ES Hwang 2005 Clinical application of array-based comparative genomic hybridization to define the relationship between multiple synchronous tumors Modern Pathology 18 4 591 597 15696129
    • (2005) Modern Pathology , vol.18 , Issue.4 , pp. 591-597
    • Wa, C.V.1    Devries, S.2    Chen, Y.Y.3    Waldman, F.M.4    Hwang, E.S.5
  • 271
    • 34147198467 scopus 로고    scopus 로고
    • Synthetic lethal screen identification of chemosensitizer loci in cancer cells
    • 17429401
    • AW Whitehurst BO Bodemann J Cardenas D Ferguson L Girard M Peyton, et al. 2007 Synthetic lethal screen identification of chemosensitizer loci in cancer cells Nature 446 7137 815 819 17429401
    • (2007) Nature , vol.446 , Issue.7137 , pp. 815-819
    • Whitehurst, A.W.1    Bodemann, B.O.2    Cardenas, J.3    Ferguson, D.4    Girard, L.5    Peyton, M.6
  • 272
    • 70449091786 scopus 로고    scopus 로고
    • Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1
    • 19847166
    • DA Barbie P Tamayo JS Boehm SY Kim SE Moody IF Dunn, et al. 2009 Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1 Nature 462 7269 108 112 19847166
    • (2009) Nature , vol.462 , Issue.7269 , pp. 108-112
    • Barbie, D.A.1    Tamayo, P.2    Boehm, J.S.3    Kim, S.Y.4    Moody, S.E.5    Dunn, I.F.6
  • 273
    • 12144289681 scopus 로고    scopus 로고
    • A large-scale RNAi screen in human cells identifies new components of the p53 pathway
    • 15042092
    • K Berns EM Hijmans J Mullenders TR Brummelkamp A Velds M Heimerikx, et al. 2004 A large-scale RNAi screen in human cells identifies new components of the p53 pathway Nature 428 6981 431 437 15042092
    • (2004) Nature , vol.428 , Issue.6981 , pp. 431-437
    • Berns, K.1    Hijmans, E.M.2    Mullenders, J.3    Brummelkamp, T.R.4    Velds, A.5    Heimerikx, M.6
  • 274
    • 55749101028 scopus 로고    scopus 로고
    • A genome-wide shRNA screen identifies GAS1 as a novel melanoma metastasis suppressor gene
    • 18981472
    • S Gobeil X Zhu CJ Doillon MR Green 2008 A genome-wide shRNA screen identifies GAS1 as a novel melanoma metastasis suppressor gene Genes and Development 22 21 2932 2940 18981472
    • (2008) Genes and Development , vol.22 , Issue.21 , pp. 2932-2940
    • Gobeil, S.1    Zhu, X.2    Doillon, C.J.3    Green, M.R.4
  • 276
    • 66149091940 scopus 로고    scopus 로고
    • A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene
    • 19490893
    • J Luo MJ Emanuele D Li CJ Creighton MR Schlabach TF Westbrook, et al. 2009 A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene Cell 137 5 835 848 19490893
    • (2009) Cell , vol.137 , Issue.5 , pp. 835-848
    • Luo, J.1    Emanuele, M.J.2    Li, D.3    Creighton, C.J.4    Schlabach, M.R.5    Westbrook, T.F.6
  • 277
    • 33646033137 scopus 로고    scopus 로고
    • A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen
    • 16564017
    • J Moffat DA Grueneberg X Yang SY Kim AM Kloepfer G Hinkle, et al. 2006 A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen Cell 124 6 1283 1298 16564017
    • (2006) Cell , vol.124 , Issue.6 , pp. 1283-1298
    • Moffat, J.1    Grueneberg, D.A.2    Yang, X.3    Kim, S.Y.4    Kloepfer, A.M.5    Hinkle, G.6
  • 278
    • 65849111219 scopus 로고    scopus 로고
    • Synthetic lethal interaction between oncogenic KRAS dependency and STK33 suppression in human cancer cells
    • 19490892
    • C Scholl S Frohling IF Dunn AC Schinzel DA Barbie SY Kim, et al. 2009 Synthetic lethal interaction between oncogenic KRAS dependency and STK33 suppression in human cancer cells Cell 137 5 821 834 19490892
    • (2009) Cell , vol.137 , Issue.5 , pp. 821-834
    • Scholl, C.1    Frohling, S.2    Dunn, I.F.3    Schinzel, A.C.4    Barbie, D.A.5    Kim, S.Y.6
  • 279
    • 38849192515 scopus 로고    scopus 로고
    • Profiling essential genes in human mammary cells by multiplex RNAi screening
    • 18239125
    • JM Silva K Marran JS Parker J Silva M Golding MR Schlabach, et al. 2008 Profiling essential genes in human mammary cells by multiplex RNAi screening Science 319 5863 617 620 18239125
    • (2008) Science , vol.319 , Issue.5863 , pp. 617-620
    • Silva, J.M.1    Marran, K.2    Parker, J.S.3    Silva, J.4    Golding, M.5    Schlabach, M.R.6
  • 280
    • 70349515367 scopus 로고    scopus 로고
    • Approaching clinical proteomics: Current state and future fields of application in cellular proteomics
    • 19739086
    • R Apweiler C Aslanidis T Deufel A Gerstner J Hansen D Hochstrasser, et al. 2009 Approaching clinical proteomics: current state and future fields of application in cellular proteomics Cytometry A 75 10 816 832 19739086
    • (2009) Cytometry A , vol.75 , Issue.10 , pp. 816-832
    • Apweiler, R.1    Aslanidis, C.2    Deufel, T.3    Gerstner, A.4    Hansen, J.5    Hochstrasser, D.6
  • 282
    • 70350435889 scopus 로고    scopus 로고
    • Current advances in tumor proteomics and candidate biomarkers for hepatic cancer
    • 19811076
    • XQ Peng F Wang X Geng WM Zhang 2009 Current advances in tumor proteomics and candidate biomarkers for hepatic cancer Expert Review of Proteomics 6 5 551 561 19811076
    • (2009) Expert Review of Proteomics , vol.6 , Issue.5 , pp. 551-561
    • Peng, X.Q.1    Wang, F.2    Geng, X.3    Zhang, W.M.4
  • 283
    • 70349189541 scopus 로고    scopus 로고
    • Genomic and proteomic biomarkers for cancer: A multitude of opportunities
    • 19406210
    • MA Tainsky 2009 Genomic and proteomic biomarkers for cancer: A multitude of opportunities Biochimica et Biophysica Acta 1796 2 176 193 19406210
    • (2009) Biochimica et Biophysica Acta , vol.1796 , Issue.2 , pp. 176-193
    • Tainsky, M.A.1
  • 284
    • 77349113840 scopus 로고    scopus 로고
    • Proteomic analysis of lymphoid and haematopoietic neoplasms: There's more than biomarker discovery
    • Zamo, A., & Cecconi, D. (2009). Proteomic analysis of lymphoid and haematopoietic neoplasms: There's more than biomarker discovery. J Proteomics.
    • (2009) J Proteomics
    • Zamo, A.1    Cecconi, D.2
  • 285
    • 33846981150 scopus 로고    scopus 로고
    • A metabolomics perspective of human brain tumours
    • 17298437
    • JL Griffin RA Kauppinen 2007 A metabolomics perspective of human brain tumours FEBS Journal 274 5 1132 1139 17298437
    • (2007) FEBS Journal , vol.274 , Issue.5 , pp. 1132-1139
    • Griffin, J.L.1    Kauppinen, R.A.2
  • 286
    • 59449097019 scopus 로고    scopus 로고
    • Clinical applications of metabolomics in oncology: A review
    • 19147747
    • JL Spratlin NJ Serkova SG Eckhardt 2009 Clinical applications of metabolomics in oncology: A review Clinical Cancer Research 15 2 431 440 19147747
    • (2009) Clinical Cancer Research , vol.15 , Issue.2 , pp. 431-440
    • Spratlin, J.L.1    Serkova, N.J.2    Eckhardt, S.G.3
  • 287
    • 60149091657 scopus 로고    scopus 로고
    • Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression
    • 19212411
    • A Sreekumar LM Poisson TM Rajendiran AP Khan Q Cao J Yu, et al. 2009 Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression Nature 457 7231 910 914 19212411
    • (2009) Nature , vol.457 , Issue.7231 , pp. 910-914
    • Sreekumar, A.1    Poisson, L.M.2    Rajendiran, T.M.3    Khan, A.P.4    Cao, Q.5    Yu, J.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.