-
1
-
-
17344371740
-
High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays
-
9771718
-
D Pinkel R Segraves D Sudar S Clark I Poole D Kowbel, et al. 1998 High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays Nature Genetics 20 2 207 211 9771718
-
(1998)
Nature Genetics
, vol.20
, Issue.2
, pp. 207-211
-
-
Pinkel, D.1
Segraves, R.2
Sudar, D.3
Clark, S.4
Poole, I.5
Kowbel, D.6
-
2
-
-
0038214755
-
Multicolor spectral karyotyping of human chromosomes
-
8662537
-
E Schrock S du Manoir T Veldman B Schoell J Wienberg MA Ferguson-Smith, et al. 1996 Multicolor spectral karyotyping of human chromosomes Science 273 5274 494 497 8662537
-
(1996)
Science
, vol.273
, Issue.5274
, pp. 494-497
-
-
Schrock, E.1
Du Manoir, S.2
Veldman, T.3
Schoell, B.4
Wienberg, J.5
Ferguson-Smith, M.A.6
-
3
-
-
74949138753
-
Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays
-
19892942
-
R Drmanac AB Sparks MJ Callow AL Halpern NL Burns BG Kermani, et al. 2009 Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays Science 327 5961 78 81 19892942
-
(2009)
Science
, vol.327
, Issue.5961
, pp. 78-81
-
-
Drmanac, R.1
Sparks, A.B.2
Callow, M.J.3
Halpern, A.L.4
Burns, N.L.5
Kermani, B.G.6
-
4
-
-
75549087838
-
A comprehensive catalogue of somatic mutations from a human cancer genome
-
Pleasance, E. D., Cheetham, R. K., Stephens, P. J., McBride, D. J., Humphray, S. J., Greenman, C. D., et al. (2009). A comprehensive catalogue of somatic mutations from a human cancer genome. Nature.
-
(2009)
Nature
-
-
Pleasance, E.D.1
Cheetham, R.K.2
Stephens, P.J.3
McBride, D.J.4
Humphray, S.J.5
Greenman, C.D.6
-
5
-
-
75549088075
-
A small-cell lung cancer genome with complex signatures of tobacco exposure
-
Pleasance, E. D., Stephens, P. J., O'Meara, S., McBride, D. J., Meynert, A., Jones, D., et al. (2009). A small-cell lung cancer genome with complex signatures of tobacco exposure. Nature.
-
(2009)
Nature
-
-
Pleasance, E.D.1
Stephens, P.J.2
O'Meara, S.3
McBride, D.J.4
Meynert, A.5
Jones, D.6
-
6
-
-
72949119310
-
Complex landscapes of somatic rearrangement in human breast cancer genomes
-
20033038
-
PJ Stephens DJ McBride ML Lin I Varela ED Pleasance JT Simpson, et al. 2009 Complex landscapes of somatic rearrangement in human breast cancer genomes Nature 462 7276 1005 1010 20033038
-
(2009)
Nature
, vol.462
, Issue.7276
, pp. 1005-1010
-
-
Stephens, P.J.1
McBride, D.J.2
Lin, M.L.3
Varela, I.4
Pleasance, E.D.5
Simpson, J.T.6
-
7
-
-
54949106292
-
SIGMA2: A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes
-
18840289
-
R Chari BP Coe C Wedseltoft M Benetti IM Wilson EA Vucic, et al. 2008 SIGMA2: a system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes BMC Bioinformatics 9 422 18840289
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 422
-
-
Chari, R.1
Coe, B.P.2
Wedseltoft, C.3
Benetti, M.4
Wilson, I.M.5
Vucic, E.A.6
-
9
-
-
34547611743
-
ISACGH: A web-based environment for the analysis of Array CGH and gene expression which includes functional profiling
-
17468499
-
L Conde D Montaner J Burguet-Castell J Tarraga I Medina F Al-Shahrour, et al. 2007 ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling Nucleic Acids Research 35 Web Server issue W81 W85 17468499
-
(2007)
Nucleic Acids Research
, vol.35
, Issue.WEB SERVER ISSUE
-
-
Conde, L.1
Montaner, D.2
Burguet-Castell, J.3
Tarraga, J.4
Medina, I.5
Al-Shahrour, F.6
-
10
-
-
33748673977
-
VAMP: Visualization and analysis of array-CGH, transcriptome and other molecular profiles
-
16820431
-
P La Rosa E Viara P Hupe G Pierron S Liva P Neuvial, et al. 2006 VAMP: visualization and analysis of array-CGH, transcriptome and other molecular profiles Bioinformatics 22 17 2066 2073 16820431
-
(2006)
Bioinformatics
, vol.22
, Issue.17
, pp. 2066-2073
-
-
La Rosa, P.1
Viara, E.2
Hupe, P.3
Pierron, G.4
Liva, S.5
Neuvial, P.6
-
13
-
-
70349969478
-
Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution
-
19812674
-
SP Shah RD Morin J Khattra L Prentice T Pugh A Burleigh, et al. 2009 Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution Nature 461 7265 809 813 19812674
-
(2009)
Nature
, vol.461
, Issue.7265
, pp. 809-813
-
-
Shah, S.P.1
Morin, R.D.2
Khattra, J.3
Prentice, L.4
Pugh, T.5
Burleigh, A.6
-
14
-
-
70450217879
-
Human DNA methylomes at base resolution show widespread epigenomic differences
-
19829295
-
R Lister M Pelizzola RH Dowen RD Hawkins G Hon J Tonti-Filippini, et al. 2009 Human DNA methylomes at base resolution show widespread epigenomic differences Nature 462 7271 315 322 19829295
-
(2009)
Nature
, vol.462
, Issue.7271
, pp. 315-322
-
-
Lister, R.1
Pelizzola, M.2
Dowen, R.H.3
Hawkins, R.D.4
Hon, G.5
Tonti-Filippini, J.6
-
15
-
-
55549101623
-
DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome
-
18987736
-
TJ Ley ER Mardis L Ding B Fulton MD McLellan K Chen, et al. 2008 DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome Nature 456 7218 66 72 18987736
-
(2008)
Nature
, vol.456
, Issue.7218
, pp. 66-72
-
-
Ley, T.J.1
Mardis, E.R.2
Ding, L.3
Fulton, B.4
McLellan, M.D.5
Chen, K.6
-
16
-
-
70149093912
-
Recurring mutations found by sequencing an acute myeloid leukemia genome
-
19657110
-
ER Mardis L Ding DJ Dooling DE Larson MD McLellan K Chen, et al. 2009 Recurring mutations found by sequencing an acute myeloid leukemia genome New England Journal of Medicine 361 11 1058 1066 19657110
-
(2009)
New England Journal of Medicine
, vol.361
, Issue.11
, pp. 1058-1066
-
-
Mardis, E.R.1
Ding, L.2
Dooling, D.J.3
Larson, D.E.4
McLellan, M.D.5
Chen, K.6
-
17
-
-
40049104784
-
Consortium hopes to sequence genome of 1000 volunteers
-
18244979
-
J Wise 2008 Consortium hopes to sequence genome of 1000 volunteers BMJ 336 7638 237 18244979
-
(2008)
BMJ
, vol.336
, Issue.7638
, pp. 237
-
-
Wise, J.1
-
18
-
-
54549108740
-
Comprehensive genomic characterization defines human glioblastoma genes and core pathways
-
The Cancer Genome Atlas Research Network
-
The Cancer Genome Atlas Research Network 2008 Comprehensive genomic characterization defines human glioblastoma genes and core pathways Nature 455 7216 1061 1068
-
(2008)
Nature
, vol.455
, Issue.7216
, pp. 1061-1068
-
-
-
19
-
-
35348983887
-
A second generation human haplotype map of over 3.1 million SNPs
-
17943122
-
KA Frazer DG Ballinger DR Cox DA Hinds LL Stuve RA Gibbs, et al. 2007 A second generation human haplotype map of over 3.1 million SNPs Nature 449 7164 851 861 17943122
-
(2007)
Nature
, vol.449
, Issue.7164
, pp. 851-861
-
-
Frazer, K.A.1
Ballinger, D.G.2
Cox, D.R.3
Hinds, D.A.4
Stuve, L.L.5
Gibbs, R.A.6
-
20
-
-
33751329250
-
Global variation in copy number in the human genome
-
DOI 10.1038/nature05329, PII NATURE05329
-
R Redon S Ishikawa KR Fitch L Feuk GH Perry TD Andrews, et al. 2006 Global variation in copy number in the human genome Nature 444 7118 444 454 17122850 (Pubitemid 44809057)
-
(2006)
Nature
, vol.444
, Issue.7118
, pp. 444-454
-
-
Redon, R.1
Ishikawa, S.2
Fitch, K.R.3
Feuk, L.4
Perry, G.H.5
Andrews, T.D.6
Fiegler, H.7
Shapero, M.H.8
Carson, A.R.9
Chen, W.10
Cho, E.K.11
Dallaire, S.12
Freeman, J.L.13
Gonzalez, J.R.14
Gratacos, M.15
Huang, J.16
Kalaitzopoulos, D.17
Komura, D.18
MacDonald, J.R.19
Marshall, C.R.20
Mei, R.21
Montgomery, L.22
Nishimura, K.23
Okamura, K.24
Shen, F.25
Somerville, M.J.26
Tchinda, J.27
Valsesia, A.28
Woodwark, C.29
Yang, F.30
Zhang, J.31
Zerjal, T.32
Zhang, J.33
Armengol, L.34
Conrad, D.F.35
Estivill, X.36
Tyler-Smith, C.37
Carter, N.P.38
Aburatani, H.39
Lee, C.40
Jones, K.W.41
Scherer, S.W.42
Hurles, M.E.43
more..
-
21
-
-
33846006596
-
A comprehensive analysis of common copy-number variations in the human genome
-
17160897
-
KK Wong RJ deLeeuw NS Dosanjh LR Kimm Z Cheng DE Horsman, et al. 2007 A comprehensive analysis of common copy-number variations in the human genome American Journal of Human Genetics 80 1 91 104 17160897
-
(2007)
American Journal of Human Genetics
, vol.80
, Issue.1
, pp. 91-104
-
-
Wong, K.K.1
Deleeuw, R.J.2
Dosanjh, N.S.3
Kimm, L.R.4
Cheng, Z.5
Horsman, D.E.6
-
22
-
-
33845926895
-
A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies
-
17194187
-
DS Shames L Girard B Gao M Sato CM Lewis N Shivapurkar, et al. 2006 A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies PLoS Medicine 3 12 e486 17194187
-
(2006)
PLoS Medicine
, vol.3
, Issue.12
, pp. 486
-
-
Shames, D.S.1
Girard, L.2
Gao, B.3
Sato, M.4
Lewis, C.M.5
Shivapurkar, N.6
-
23
-
-
33749993417
-
The consensus coding sequences of human breast and colorectal cancers
-
16959974
-
T Sjoblom S Jones LD Wood DW Parsons J Lin TD Barber, et al. 2006 The consensus coding sequences of human breast and colorectal cancers Science 314 5797 268 274 16959974
-
(2006)
Science
, vol.314
, Issue.5797
, pp. 268-274
-
-
Sjoblom, T.1
Jones, S.2
Wood, L.D.3
Parsons, D.W.4
Lin, J.5
Barber, T.D.6
-
24
-
-
33747794587
-
Genome-scale loss-of-function screening with a lentiviral RNAi library
-
16929317
-
DE Root N Hacohen WC Hahn ES Lander DM Sabatini 2006 Genome-scale loss-of-function screening with a lentiviral RNAi library Nat Methods 3 9 715 719 16929317
-
(2006)
Nat Methods
, vol.3
, Issue.9
, pp. 715-719
-
-
Root, D.E.1
Hacohen, N.2
Hahn, W.C.3
Lander, E.S.4
Sabatini, D.M.5
-
25
-
-
33644649616
-
High-throughput DNA methylation profiling using universal bead arrays
-
16449502
-
M Bibikova Z Lin L Zhou E Chudin EW Garcia B Wu, et al. 2006 High-throughput DNA methylation profiling using universal bead arrays Genome Research 16 3 383 393 16449502
-
(2006)
Genome Research
, vol.16
, Issue.3
, pp. 383-393
-
-
Bibikova, M.1
Lin, Z.2
Zhou, L.3
Chudin, E.4
Garcia, E.W.5
Wu, B.6
-
26
-
-
23044514626
-
Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
-
16007088
-
M Weber JJ Davies D Wittig EJ Oakeley M Haase WL Lam, et al. 2005 Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells Nature Genetics 37 8 853 862 16007088
-
(2005)
Nature Genetics
, vol.37
, Issue.8
, pp. 853-862
-
-
Weber, M.1
Davies, J.J.2
Wittig, D.3
Oakeley, E.J.4
Haase, M.5
Lam, W.L.6
-
27
-
-
79959524146
-
A haplotype map of the human genome
-
International HapMap Consortium
-
International HapMap Consortium 2005 A haplotype map of the human genome Nature 437 7063 1299 1320
-
(2005)
Nature
, vol.437
, Issue.7063
, pp. 1299-1320
-
-
-
28
-
-
20444460289
-
MicroRNA expression profiles classify human cancers
-
15944708
-
J Lu G Getz EA Miska E Alvarez-Saavedra J Lamb D Peck, et al. 2005 MicroRNA expression profiles classify human cancers Nature 435 7043 834 838 15944708
-
(2005)
Nature
, vol.435
, Issue.7043
, pp. 834-838
-
-
Lu, J.1
Getz, G.2
Miska, E.A.3
Alvarez-Saavedra, E.4
Lamb, J.5
Peck, D.6
-
29
-
-
3843084078
-
The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website
-
15188009
-
S Bamford E Dawson S Forbes J Clements R Pettett A Dogan, et al. 2004 The COSMIC (Catalogue of Somatic Mutations in Cancer) database and website British Journal of Cancer 91 2 355 358 15188009
-
(2004)
British Journal of Cancer
, vol.91
, Issue.2
, pp. 355-358
-
-
Bamford, S.1
Dawson, E.2
Forbes, S.3
Clements, J.4
Pettett, R.5
Dogan, A.6
-
30
-
-
12144288006
-
A resource for large-scale RNA-interference-based screens in mammals
-
15042091
-
PJ Paddison JM Silva DS Conklin M Schlabach M Li S Aruleba, et al. 2004 A resource for large-scale RNA-interference-based screens in mammals Nature 428 6981 427 431 15042091
-
(2004)
Nature
, vol.428
, Issue.6981
, pp. 427-431
-
-
Paddison, P.J.1
Silva, J.M.2
Conklin, D.S.3
Schlabach, M.4
Li, M.5
Aruleba, S.6
-
31
-
-
38849098442
-
Cancer proliferation gene discovery through functional genomics
-
18239126
-
MR Schlabach J Luo NL Solimini G Hu Q Xu MZ Li, et al. 2008 Cancer proliferation gene discovery through functional genomics Science 319 5863 620 624 18239126
-
(2008)
Science
, vol.319
, Issue.5863
, pp. 620-624
-
-
Schlabach, M.R.1
Luo, J.2
Solimini, N.L.3
Hu, G.4
Xu, Q.5
Li, M.Z.6
-
32
-
-
1542515338
-
A census of human cancer genes
-
14993899
-
PA Futreal L Coin M Marshall T Down T Hubbard R Wooster, et al. 2004 A census of human cancer genes Nature Reviews Cancer 4 3 177 183 14993899
-
(2004)
Nature Reviews Cancer
, vol.4
, Issue.3
, pp. 177-183
-
-
Futreal, P.A.1
Coin, L.2
Marshall, M.3
Down, T.4
Hubbard, T.5
Wooster, R.6
-
33
-
-
4444291843
-
Detection of large-scale variation in the human genome
-
15286789
-
AJ Iafrate L Feuk MN Rivera ML Listewnik PK Donahoe Y Qi, et al. 2004 Detection of large-scale variation in the human genome Nature Genetics 36 9 949 951 15286789
-
(2004)
Nature Genetics
, vol.36
, Issue.9
, pp. 949-951
-
-
Iafrate, A.J.1
Feuk, L.2
Rivera, M.N.3
Listewnik, M.L.4
Donahoe, P.K.5
Qi, Y.6
-
34
-
-
3242808027
-
Large-scale copy number polymorphism in the human genome
-
15273396
-
J Sebat B Lakshmi J Troge J Alexander J Young P Lundin, et al. 2004 Large-scale copy number polymorphism in the human genome Science 305 5683 525 528 15273396
-
(2004)
Science
, vol.305
, Issue.5683
, pp. 525-528
-
-
Sebat, J.1
Lakshmi, B.2
Troge, J.3
Alexander, J.4
Young, J.5
Lundin, P.6
-
35
-
-
10744233914
-
A tiling resolution DNA microarray with complete coverage of the human genome
-
14981516
-
AS Ishkanian CA Malloff SK Watson RJ DeLeeuw B Chi BP Coe, et al. 2004 A tiling resolution DNA microarray with complete coverage of the human genome Nature Genetics 36 3 299 303 14981516
-
(2004)
Nature Genetics
, vol.36
, Issue.3
, pp. 299-303
-
-
Ishkanian, A.S.1
Malloff, C.A.2
Watson, S.K.3
Deleeuw, R.J.4
Chi, B.5
Coe, B.P.6
-
36
-
-
19944376457
-
Global identification of human transcribed sequences with genome tiling arrays
-
15539566
-
P Bertone V Stolc TE Royce JS Rozowsky AE Urban X Zhu, et al. 2004 Global identification of human transcribed sequences with genome tiling arrays Science 306 5705 2242 2246 15539566
-
(2004)
Science
, vol.306
, Issue.5705
, pp. 2242-2246
-
-
Bertone, P.1
Stolc, V.2
Royce, T.E.3
Rozowsky, J.S.4
Urban, A.E.5
Zhu, X.6
-
37
-
-
18444402182
-
The ensembl genome database project
-
11752248
-
T Hubbard D Barker E Birney G Cameron Y Chen L Clark, et al. 2002 The ensembl genome database project Nucleic Acids Research 30 1 38 41 11752248
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.1
, pp. 38-41
-
-
Hubbard, T.1
Barker, D.2
Birney, E.3
Cameron, G.4
Chen, Y.5
Clark, L.6
-
38
-
-
0036079158
-
The human genome browser at UCSC
-
12045153
-
WJ Kent CW Sugnet TS Furey KM Roskin TH Pringle AM Zahler, et al. 2002 The human genome browser at UCSC Genome Research 12 6 996 1006 12045153
-
(2002)
Genome Research
, vol.12
, Issue.6
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
-
39
-
-
0036275126
-
BeadArray technology: Enabling an accurate, cost-effective approach to high-throughput genotyping
-
Oliphant, A., Barker, D. L., Stuelpnagel, J. R., & Chee M. S. (2002). BeadArray technology: enabling an accurate, cost-effective approach to high-throughput genotyping. Biotechniques, Suppl:56-58, 60-51.
-
(2002)
Biotechniques
, Issue.56-58 SUPPL
, pp. 60-51
-
-
Oliphant, A.1
Barker, D.L.2
Stuelpnagel, J.R.3
Chee, M.S.4
-
40
-
-
0037025173
-
Cancer. Addiction to oncogenes-the Achilles heal of cancer
-
12098689
-
IB Weinstein 2002 Cancer. Addiction to oncogenes-the Achilles heal of cancer Science 297 5578 63 64 12098689
-
(2002)
Science
, vol.297
, Issue.5578
, pp. 63-64
-
-
Weinstein, I.B.1
-
41
-
-
44849093562
-
Oncogene addiction
-
18451130 discussion 3080
-
IB Weinstein A Joe 2008 Oncogene addiction Cancer Research 68 9 3077 3080 18451130 discussion 3080
-
(2008)
Cancer Research
, vol.68
, Issue.9
, pp. 3077-3080
-
-
Weinstein, I.B.1
Joe, A.2
-
42
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
11237011
-
ES Lander LM Linton B Birren C Nusbaum MC Zody J Baldwin, et al. 2001 Initial sequencing and analysis of the human genome Nature 409 6822 860 921 11237011
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
Baldwin, J.6
-
43
-
-
0035895505
-
The sequence of the human genome
-
11181995
-
JC Venter MD Adams EW Myers PW Li RJ Mural GG Sutton, et al. 2001 The sequence of the human genome Science 291 5507 1304 1351 11181995
-
(2001)
Science
, vol.291
, Issue.5507
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
-
44
-
-
0035054441
-
Genome and genetic resources from the cancer genome anatomy project
-
11257097
-
GJ Riggins RL Strausberg 2001 Genome and genetic resources from the cancer genome anatomy project Human Molecular Genetics 10 7 663 667 11257097
-
(2001)
Human Molecular Genetics
, vol.10
, Issue.7
, pp. 663-667
-
-
Riggins, G.J.1
Strausberg, R.L.2
-
46
-
-
0036246455
-
Applications of SKY in cancer cytogenetics
-
12025233
-
JM Bayani JA Squire 2002 Applications of SKY in cancer cytogenetics Cancer Investigation 20 3 373 386 12025233
-
(2002)
Cancer Investigation
, vol.20
, Issue.3
, pp. 373-386
-
-
Bayani, J.M.1
Squire, J.A.2
-
47
-
-
0026495364
-
Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors
-
1359641
-
A Kallioniemi OP Kallioniemi D Sudar D Rutovitz JW Gray F Waldman, et al. 1992 Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors Science 258 5083 818 821 1359641
-
(1992)
Science
, vol.258
, Issue.5083
, pp. 818-821
-
-
Kallioniemi, A.1
Kallioniemi, O.P.2
Sudar, D.3
Rutovitz, D.4
Gray, J.W.5
Waldman, F.6
-
48
-
-
2942536423
-
Genetic alteration and gene expression modulation during cancer progression
-
15035667
-
C Garnis TP Buys WL Lam 2004 Genetic alteration and gene expression modulation during cancer progression Molecular Cancer 3 9 15035667
-
(2004)
Molecular Cancer
, vol.3
, pp. 9
-
-
Garnis, C.1
Buys, T.P.2
Lam, W.L.3
-
49
-
-
24344436410
-
Genomic imbalances in human leukemia and lymphoma detected by comparative genomic hybridization (Review)
-
16077907
-
E Gebhart 2005 Genomic imbalances in human leukemia and lymphoma detected by comparative genomic hybridization (Review) International Journal of Oncology 27 3 593 606 16077907
-
(2005)
International Journal of Oncology
, vol.27
, Issue.3
, pp. 593-606
-
-
Gebhart, E.1
-
50
-
-
0034133818
-
Patterns of genomic imbalances in human solid tumors (Review)
-
10639584
-
E Gebhart T Liehr 2000 Patterns of genomic imbalances in human solid tumors (Review) International Journal of Oncology 16 2 383 399 10639584
-
(2000)
International Journal of Oncology
, vol.16
, Issue.2
, pp. 383-399
-
-
Gebhart, E.1
Liehr, T.2
-
51
-
-
0032546360
-
Mutations of mitotic checkpoint genes in human cancers
-
9521327
-
DP Cahill C Lengauer J Yu GJ Riggins JK Willson SD Markowitz, et al. 1998 Mutations of mitotic checkpoint genes in human cancers Nature 392 6673 300 303 9521327
-
(1998)
Nature
, vol.392
, Issue.6673
, pp. 300-303
-
-
Cahill, D.P.1
Lengauer, C.2
Yu, J.3
Riggins, G.J.4
Willson, J.K.5
Markowitz, S.D.6
-
52
-
-
27144540976
-
Centrosome amplification, chromosome instability and cancer development
-
16253756
-
K Fukasawa 2005 Centrosome amplification, chromosome instability and cancer development Cancer Letters 230 1 6 19 16253756
-
(2005)
Cancer Letters
, vol.230
, Issue.1
, pp. 6-19
-
-
Fukasawa, K.1
-
54
-
-
4444345401
-
In situ analyses of genome instability in breast cancer
-
15300252
-
K Chin CO de Solorzano D Knowles A Jones W Chou EG Rodriguez, et al. 2004 In situ analyses of genome instability in breast cancer Nature Genetics 36 9 984 988 15300252
-
(2004)
Nature Genetics
, vol.36
, Issue.9
, pp. 984-988
-
-
Chin, K.1
De Solorzano, C.O.2
Knowles, D.3
Jones, A.4
Chou, W.5
Rodriguez, E.G.6
-
55
-
-
0000839280
-
Telomere dysfunction provokes regional amplification and deletion in cancer genomes
-
12204535
-
RC O'Hagan S Chang RS Maser R Mohan SE Artandi L Chin 2002 Telomere dysfunction provokes regional amplification and deletion in cancer genomes Cancer Cell 2 2 149 155 12204535
-
(2002)
Cancer Cell
, vol.2
, Issue.2
, pp. 149-155
-
-
O'Hagan, R.C.1
Chang, S.2
Maser, R.S.3
Mohan, R.4
Artandi, S.E.5
Chin, L.6
-
56
-
-
0026647450
-
Transcription factors, translocations and haematological malignancies
-
1633508
-
AR Green 1992 Transcription factors, translocations and haematological malignancies Blood Reviews 6 2 118 124 1633508
-
(1992)
Blood Reviews
, vol.6
, Issue.2
, pp. 118-124
-
-
Green, A.R.1
-
57
-
-
55249116841
-
Chromosomal translocations: Revisited yet again
-
18779403
-
JD Rowley 2008 Chromosomal translocations: revisited yet again Blood 112 6 2183 2189 18779403
-
(2008)
Blood
, vol.112
, Issue.6
, pp. 2183-2189
-
-
Rowley, J.D.1
-
58
-
-
33846376154
-
Cytogenetically balanced translocations are associated with focal copy number alterations
-
17051368
-
SK Watson RJ deLeeuw DE Horsman JA Squire WL Lam 2007 Cytogenetically balanced translocations are associated with focal copy number alterations Human Genetics 120 6 795 805 17051368
-
(2007)
Human Genetics
, vol.120
, Issue.6
, pp. 795-805
-
-
Watson, S.K.1
Deleeuw, R.J.2
Horsman, D.E.3
Squire, J.A.4
Lam, W.L.5
-
60
-
-
70849135782
-
Induced chromosomal proximity and gene fusions in prostate cancer
-
19933109
-
RS Mani SA Tomlins K Callahan A Ghosh MK Nyati S Varambally, et al. 2009 Induced chromosomal proximity and gene fusions in prostate cancer Science 326 5957 1230 19933109
-
(2009)
Science
, vol.326
, Issue.5957
, pp. 1230
-
-
Mani, R.S.1
Tomlins, S.A.2
Callahan, K.3
Ghosh, A.4
Nyati, M.K.5
Varambally, S.6
-
61
-
-
27344451557
-
Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer
-
16254181
-
SA Tomlins DR Rhodes S Perner SM Dhanasekaran R Mehra XW Sun, et al. 2005 Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer Science 310 5748 644 648 16254181
-
(2005)
Science
, vol.310
, Issue.5748
, pp. 644-648
-
-
Tomlins, S.A.1
Rhodes, D.R.2
Perner, S.3
Dhanasekaran, S.M.4
Mehra, R.5
Sun, X.W.6
-
62
-
-
0034674896
-
Chromosome 19 translocation, overexpression of Notch3, and human lung cancer
-
10944559
-
TP Dang AF Gazdar AK Virmani T Sepetavec KR Hande JD Minna, et al. 2000 Chromosome 19 translocation, overexpression of Notch3, and human lung cancer Journal of the National Cancer Institute 92 16 1355 1357 10944559
-
(2000)
Journal of the National Cancer Institute
, vol.92
, Issue.16
, pp. 1355-1357
-
-
Dang, T.P.1
Gazdar, A.F.2
Virmani, A.K.3
Sepetavec, T.4
Hande, K.R.5
Minna, J.D.6
-
63
-
-
34547638047
-
Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer
-
17625570
-
M Soda YL Choi M Enomoto S Takada Y Yamashita S Ishikawa, et al. 2007 Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer Nature 448 7153 561 566 17625570
-
(2007)
Nature
, vol.448
, Issue.7153
, pp. 561-566
-
-
Soda, M.1
Choi, Y.L.2
Enomoto, M.3
Takada, S.4
Yamashita, Y.5
Ishikawa, S.6
-
64
-
-
23044466543
-
The interactive online SKY/M-FISH & CGH database and the Entrez cancer chromosomes search database: Linkage of chromosomal aberrations with the genome sequence
-
15934046
-
T Knutsen V Gobu R Knaus H Padilla-Nash M Augustus RL Strausberg, et al. 2005 The interactive online SKY/M-FISH & CGH database and the Entrez cancer chromosomes search database: Linkage of chromosomal aberrations with the genome sequence Genes, Chromosomes, and Cancer 44 1 52 64 15934046
-
(2005)
Genes, Chromosomes, and Cancer
, vol.44
, Issue.1
, pp. 52-64
-
-
Knutsen, T.1
Gobu, V.2
Knaus, R.3
Padilla-Nash, H.4
Augustus, M.5
Strausberg, R.L.6
-
67
-
-
75549087826
-
COSMIC (the Catalogue of Somatic Mutations in Cancer): A resource to investigate acquired mutations in human cancer
-
19906727
-
SA Forbes G Tang N Bindal S Bamford E Dawson C Cole, et al. 2010 COSMIC (the Catalogue of Somatic Mutations in Cancer): A resource to investigate acquired mutations in human cancer Nucleic Acids Research 38 D652 D657 19906727
-
(2010)
Nucleic Acids Research
, vol.38
-
-
Forbes, S.A.1
Tang, G.2
Bindal, N.3
Bamford, S.4
Dawson, E.5
Cole, C.6
-
68
-
-
13444273394
-
Cancer gene expression database (CGED): A database for gene expression profiling with accompanying clinical information of human cancer tissues
-
15608255
-
K Kato R Yamashita R Matoba M Monden S Noguchi T Takagi, et al. 2005 Cancer gene expression database (CGED): A database for gene expression profiling with accompanying clinical information of human cancer tissues Nucleic Acids Research 33 D533 D536 15608255
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Kato, K.1
Yamashita, R.2
Matoba, R.3
Monden, M.4
Noguchi, S.5
Takagi, T.6
-
71
-
-
0037255084
-
Human gene-centric databases at the Weizmann institute of science: GeneCards, UDB, CroW 21 and HORDE
-
12519968
-
M Safran V Chalifa-Caspi O Shmueli T Olender M Lapidot N Rosen, et al. 2003 Human gene-centric databases at the Weizmann institute of science: GeneCards, UDB, CroW 21 and HORDE Nucleic Acids Research 31 1 142 146 12519968
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 142-146
-
-
Safran, M.1
Chalifa-Caspi, V.2
Shmueli, O.3
Olender, T.4
Lapidot, M.5
Rosen, N.6
-
74
-
-
58149179989
-
MiR2Disease: A manually curated database for microRNA deregulation in human disease
-
18927107
-
Q Jiang Y Wang Y Hao L Juan M Teng X Zhang, et al. 2009 miR2Disease: A manually curated database for microRNA deregulation in human disease Nucleic Acids Research 37 D98 D104 18927107
-
(2009)
Nucleic Acids Research
, vol.37
-
-
Jiang, Q.1
Wang, Y.2
Hao, Y.3
Juan, L.4
Teng, M.5
Zhang, X.6
-
75
-
-
44149083586
-
MiRDB: A microRNA target prediction and functional annotation database with a wiki interface
-
18426918
-
X Wang 2008 miRDB: A microRNA target prediction and functional annotation database with a wiki interface RNA 14 6 1012 1017 18426918
-
(2008)
RNA
, vol.14
, Issue.6
, pp. 1012-1017
-
-
Wang, X.1
-
79
-
-
33847246805
-
Oncomine 3.0: Genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles
-
17356713
-
DR Rhodes S Kalyana-Sundaram V Mahavisno R Varambally J Yu BB Briggs, et al. 2007 Oncomine 3.0: Genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles Neoplasia 9 2 166 180 17356713
-
(2007)
Neoplasia
, vol.9
, Issue.2
, pp. 166-180
-
-
Rhodes, D.R.1
Kalyana-Sundaram, S.2
Mahavisno, V.3
Varambally, R.4
Yu, J.5
Briggs, B.B.6
-
80
-
-
38949218379
-
Genomic imbalances in 5918 malignant epithelial tumors: An explorative meta-analysis of chromosomal CGH data
-
18088415
-
M Baudis 2007 Genomic imbalances in 5918 malignant epithelial tumors: an explorative meta-analysis of chromosomal CGH data BMC Cancer 7 226 18088415
-
(2007)
BMC Cancer
, vol.7
, pp. 226
-
-
Baudis, M.1
-
87
-
-
31344457934
-
Recent advances in array comparative genomic hybridization technologies and their applications in human genetics
-
16288307
-
WW Lockwood R Chari B Chi WL Lam 2006 Recent advances in array comparative genomic hybridization technologies and their applications in human genetics European Journal of Human Genetics 14 2 139 148 16288307
-
(2006)
European Journal of Human Genetics
, vol.14
, Issue.2
, pp. 139-148
-
-
Lockwood, W.W.1
Chari, R.2
Chi, B.3
Lam, W.L.4
-
88
-
-
0032823523
-
Genome-wide analysis of DNA copy-number changes using cDNA microarrays
-
10471496
-
JR Pollack CM Perou AA Alizadeh MB Eisen A Pergamenschikov CF Williams, et al. 1999 Genome-wide analysis of DNA copy-number changes using cDNA microarrays Nature Genetics 23 1 41 46 10471496
-
(1999)
Nature Genetics
, vol.23
, Issue.1
, pp. 41-46
-
-
Pollack, J.R.1
Perou, C.M.2
Alizadeh, A.A.3
Eisen, M.B.4
Pergamenschikov, A.5
Williams, C.F.6
-
89
-
-
70349978985
-
SnoopCGH: Software for visualizing comparative genomic hybridization data
-
19687029
-
J Almagro-Garcia M Manske C Carret S Campino S Auburn BL Macinnis, et al. 2009 SnoopCGH: software for visualizing comparative genomic hybridization data Bioinformatics 25 20 2732 2733 19687029
-
(2009)
Bioinformatics
, vol.25
, Issue.20
, pp. 2732-2733
-
-
Almagro-Garcia, J.1
Manske, M.2
Carret, C.3
Campino, S.4
Auburn, S.5
MacInnis, B.L.6
-
90
-
-
33744953369
-
Computational methods for the analysis of array comparative genomic hybridization
-
R Chari WW Lockwood WL Lam 2007 Computational methods for the analysis of array comparative genomic hybridization Cancer Information 2 48 58
-
(2007)
Cancer Information
, vol.2
, pp. 48-58
-
-
Chari, R.1
Lockwood, W.W.2
Lam, W.L.3
-
91
-
-
2942511488
-
SeeGH-a software tool for visualization of whole genome array comparative genomic hybridization data
-
15040819
-
B Chi RJ DeLeeuw BP Coe C MacAulay WL Lam 2004 SeeGH-a software tool for visualization of whole genome array comparative genomic hybridization data BMC Bioinformatics 5 13 15040819
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 13
-
-
Chi, B.1
Deleeuw, R.J.2
Coe, B.P.3
MacAulay, C.4
Lam, W.L.5
-
93
-
-
34147104969
-
A faster circular binary segmentation algorithm for the analysis of array CGH data
-
17234643
-
ES Venkatraman AB Olshen 2007 A faster circular binary segmentation algorithm for the analysis of array CGH data Bioinformatics 23 6 657 663 17234643
-
(2007)
Bioinformatics
, vol.23
, Issue.6
, pp. 657-663
-
-
Venkatraman, E.S.1
Olshen, A.B.2
-
94
-
-
10744230160
-
High-resolution analysis of DNA copy number using oligonucleotide microarrays
-
14762065
-
GR Bignell J Huang J Greshock S Watt A Butler S West, et al. 2004 High-resolution analysis of DNA copy number using oligonucleotide microarrays Genome Research 14 2 287 295 14762065
-
(2004)
Genome Research
, vol.14
, Issue.2
, pp. 287-295
-
-
Bignell, G.R.1
Huang, J.2
Greshock, J.3
Watt, S.4
Butler, A.5
West, S.6
-
95
-
-
70349242044
-
Identification and molecular characterization of recurrent genomic deletions on 7p12 in the IKZF1 gene in a large cohort of BCR-ABL1-positive acute lymphoblastic leukemia patients: On behalf of Gruppo Italiano Malattie Ematologiche dell'Adulto Acute Leukemia Working Party (GIMEMA AL WP)
-
19589926
-
I Iacobucci CT Storlazzi D Cilloni A Lonetti E Ottaviani S Soverini, et al. 2009 Identification and molecular characterization of recurrent genomic deletions on 7p12 in the IKZF1 gene in a large cohort of BCR-ABL1-positive acute lymphoblastic leukemia patients: On behalf of Gruppo Italiano Malattie Ematologiche dell'Adulto Acute Leukemia Working Party (GIMEMA AL WP) Blood 114 10 2159 2167 19589926
-
(2009)
Blood
, vol.114
, Issue.10
, pp. 2159-2167
-
-
Iacobucci, I.1
Storlazzi, C.T.2
Cilloni, D.3
Lonetti, A.4
Ottaviani, E.5
Soverini, S.6
-
96
-
-
75149141075
-
Frequent deletion of CDKN2A and recurrent coamplification of KIT, PDGFRA, and KDR in fibrosarcoma of bone-an array comparative genomic hybridization study
-
T Niini JA Lopez-Guerrero S Ninomiya M Guled CM Hattinger F Michelacci, et al. 2009 Frequent deletion of CDKN2A and recurrent coamplification of KIT, PDGFRA, and KDR in fibrosarcoma of bone-an array comparative genomic hybridization study Genes, Chromosomes, and Cancer 49 2 132 143
-
(2009)
Genes, Chromosomes, and Cancer
, vol.49
, Issue.2
, pp. 132-143
-
-
Niini, T.1
Lopez-Guerrero, J.A.2
Ninomiya, S.3
Guled, M.4
Hattinger, C.M.5
Michelacci, F.6
-
97
-
-
25844494223
-
Analysis of chromosome breakpoints in neuroblastoma at sub-kilobase resolution using fine-tiling oligonucleotide array CGH
-
16075461
-
RR Selzer TA Richmond NJ Pofahl RD Green PS Eis P Nair, et al. 2005 Analysis of chromosome breakpoints in neuroblastoma at sub-kilobase resolution using fine-tiling oligonucleotide array CGH Genes, Chromosomes, and Cancer 44 3 305 319 16075461
-
(2005)
Genes, Chromosomes, and Cancer
, vol.44
, Issue.3
, pp. 305-319
-
-
Selzer, R.R.1
Richmond, T.A.2
Pofahl, N.J.3
Green, R.D.4
Eis, P.S.5
Nair, P.6
-
98
-
-
2342453338
-
An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays
-
15126342
-
X Zhao C Li JG Paez K Chin PA Janne TH Chen, et al. 2004 An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays Cancer Research 64 9 3060 3071 15126342
-
(2004)
Cancer Research
, vol.64
, Issue.9
, pp. 3060-3071
-
-
Zhao, X.1
Li, C.2
Paez, J.G.3
Chin, K.4
Janne, P.A.5
Chen, T.H.6
-
99
-
-
18744416514
-
Digital karyotyping
-
12461184
-
TL Wang C Maierhofer MR Speicher C Lengauer B Vogelstein KW Kinzler, et al. 2002 Digital karyotyping Proceedings of the National Academy of Sciences of the United States of America 99 25 16156 16161 12461184
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.25
, pp. 16156-16161
-
-
Wang, T.L.1
Maierhofer, C.2
Speicher, M.R.3
Lengauer, C.4
Vogelstein, B.5
Kinzler, K.W.6
-
100
-
-
22844451617
-
Fine-scale structural variation of the human genome
-
15895083
-
E Tuzun AJ Sharp JA Bailey R Kaul VA Morrison LM Pertz, et al. 2005 Fine-scale structural variation of the human genome Nature Genetics 37 7 727 732 15895083
-
(2005)
Nature Genetics
, vol.37
, Issue.7
, pp. 727-732
-
-
Tuzun, E.1
Sharp, A.J.2
Bailey, J.A.3
Kaul, R.4
Morrison, V.A.5
Pertz, L.M.6
-
101
-
-
33644653015
-
Decoding the fine-scale structure of a breast cancer genome and transcriptome
-
16461635
-
S Volik BJ Raphael G Huang MR Stratton G Bignel J Murnane, et al. 2006 Decoding the fine-scale structure of a breast cancer genome and transcriptome Genome Research 16 3 394 404 16461635
-
(2006)
Genome Research
, vol.16
, Issue.3
, pp. 394-404
-
-
Volik, S.1
Raphael, B.J.2
Huang, G.3
Stratton, M.R.4
Bignel, G.5
Murnane, J.6
-
102
-
-
0037934515
-
End-sequence profiling: Sequence-based analysis of aberrant genomes
-
12788976
-
S Volik S Zhao K Chin JH Brebner DR Herndon Q Tao, et al. 2003 End-sequence profiling: Sequence-based analysis of aberrant genomes Proceedings of the National Academy of Sciences of the United States of America 100 13 7696 7701 12788976
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.13
, pp. 7696-7701
-
-
Volik, S.1
Zhao, S.2
Chin, K.3
Brebner, J.H.4
Herndon, D.R.5
Tao, Q.6
-
103
-
-
70449698364
-
Next-generation gap
-
19844227
-
JD McPherson 2009 Next-generation gap Nature Methods 6 11 Suppl S2 S5 19844227
-
(2009)
Nature Methods
, vol.6
, Issue.SUPPL
-
-
McPherson, J.D.1
-
104
-
-
70349556543
-
Personalized copy number and segmental duplication maps using next-generation sequencing
-
19718026
-
C Alkan JM Kidd T Marques-Bonet G Aksay F Antonacci F Hormozdiari, et al. 2009 Personalized copy number and segmental duplication maps using next-generation sequencing Nature Genetics 41 10 1061 1067 19718026
-
(2009)
Nature Genetics
, vol.41
, Issue.10
, pp. 1061-1067
-
-
Alkan, C.1
Kidd, J.M.2
Marques-Bonet, T.3
Aksay, G.4
Antonacci, F.5
Hormozdiari, F.6
-
106
-
-
77950461601
-
Origins and functional impact of copy number variation in the human genome
-
doi:10.1038/nature08516
-
Conrad, D. F., Pinto, D., Redon, R., Feuk, L., Gokcumen, O., Zhang, Y., et al. (2009). Origins and functional impact of copy number variation in the human genome. Nature. doi: 10.1038/nature08516
-
(2009)
Nature
-
-
Conrad, D.F.1
Pinto, D.2
Redon, R.3
Feuk, L.4
Gokcumen, O.5
Zhang, Y.6
-
107
-
-
33751349817
-
Accurate and reliable high-throughput detection of copy number variation in the human genome
-
17122085
-
H Fiegler R Redon D Andrews C Scott R Andrews C Carder, et al. 2006 Accurate and reliable high-throughput detection of copy number variation in the human genome Genome Research 16 12 1566 1574 17122085
-
(2006)
Genome Research
, vol.16
, Issue.12
, pp. 1566-1574
-
-
Fiegler, H.1
Redon, R.2
Andrews, D.3
Scott, C.4
Andrews, R.5
Carder, C.6
-
108
-
-
39749197456
-
Genotype, haplotype and copy-number variation in worldwide human populations
-
18288195
-
M Jakobsson SW Scholz P Scheet JR Gibbs JM VanLiere HC Fung, et al. 2008 Genotype, haplotype and copy-number variation in worldwide human populations Nature 451 7181 998 1003 18288195
-
(2008)
Nature
, vol.451
, Issue.7181
, pp. 998-1003
-
-
Jakobsson, M.1
Scholz, S.W.2
Scheet, P.3
Gibbs, J.R.4
Vanliere, J.M.5
Fung, H.C.6
-
109
-
-
43049143055
-
Mapping and sequencing of structural variation from eight human genomes
-
18451855
-
JM Kidd GM Cooper WF Donahue HS Hayden N Sampas T Graves, et al. 2008 Mapping and sequencing of structural variation from eight human genomes Nature 453 7191 56 64 18451855
-
(2008)
Nature
, vol.453
, Issue.7191
, pp. 56-64
-
-
Kidd, J.M.1
Cooper, G.M.2
Donahue, W.F.3
Hayden, H.S.4
Sampas, N.5
Graves, T.6
-
110
-
-
52949141845
-
Integrated detection and population-genetic analysis of SNPs and copy number variation
-
18776908
-
SA McCarroll FG Kuruvilla JM Korn S Cawley J Nemesh A Wysoker, et al. 2008 Integrated detection and population-genetic analysis of SNPs and copy number variation Nature Genetics 40 10 1166 1174 18776908
-
(2008)
Nature Genetics
, vol.40
, Issue.10
, pp. 1166-1174
-
-
McCarroll, S.A.1
Kuruvilla, F.G.2
Korn, J.M.3
Cawley, S.4
Nemesh, J.5
Wysoker, A.6
-
111
-
-
69749121852
-
High-resolution mapping and analysis of copy number variations in the human genome: A data resource for clinical and research applications
-
19592680
-
TH Shaikh X Gai JC Perin JT Glessner H Xie K Murphy, et al. 2009 High-resolution mapping and analysis of copy number variations in the human genome: a data resource for clinical and research applications Genome Research 19 9 1682 1690 19592680
-
(2009)
Genome Research
, vol.19
, Issue.9
, pp. 1682-1690
-
-
Shaikh, T.H.1
Gai, X.2
Perin, J.C.3
Glessner, J.T.4
Xie, H.5
Murphy, K.6
-
112
-
-
59249105978
-
A microhomology-mediated break-induced replication model for the origin of human copy number variation
-
19180184
-
PJ Hastings G Ira JR Lupski 2009 A microhomology-mediated break-induced replication model for the origin of human copy number variation PLoS Genetics 5 1 e1000327 19180184
-
(2009)
PLoS Genetics
, vol.5
, Issue.1
, pp. 1000327
-
-
Hastings, P.J.1
Ira, G.2
Lupski, J.R.3
-
113
-
-
67649289900
-
Copy number variation at 1q21.1 associated with neuroblastoma
-
19536264
-
SJ Diskin C Hou JT Glessner EF Attiyeh M Laudenslager K Bosse, et al. 2009 Copy number variation at 1q21.1 associated with neuroblastoma Nature 459 7249 987 991 19536264
-
(2009)
Nature
, vol.459
, Issue.7249
, pp. 987-991
-
-
Diskin, S.J.1
Hou, C.2
Glessner, J.T.3
Attiyeh, E.F.4
Laudenslager, M.5
Bosse, K.6
-
114
-
-
48649093407
-
DNA amplification is a ubiquitous mechanism of oncogene activation in lung and other cancers
-
18391978
-
WW Lockwood R Chari BP Coe L Girard C Macaulay S Lam, et al. 2008 DNA amplification is a ubiquitous mechanism of oncogene activation in lung and other cancers Oncogene 27 33 4615 4624 18391978
-
(2008)
Oncogene
, vol.27
, Issue.33
, pp. 4615-4624
-
-
Lockwood, W.W.1
Chari, R.2
Coe, B.P.3
Girard, L.4
MacAulay, C.5
Lam, S.6
-
116
-
-
68349115163
-
The breast cancer somatic 'muta-ome': Tackling the complexity
-
19344493
-
AE Teschendorff C Caldas 2009 The breast cancer somatic 'muta-ome': tackling the complexity Breast Cancer Research 11 2 301 19344493
-
(2009)
Breast Cancer Research
, vol.11
, Issue.2
, pp. 301
-
-
Teschendorff, A.E.1
Caldas, C.2
-
117
-
-
39749108733
-
High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer
-
17925008
-
SF Chin AE Teschendorff JC Marioni Y Wang NL Barbosa-Morais NP Thorne, et al. 2007 High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer Genome Biology 8 10 R215 17925008
-
(2007)
Genome Biology
, vol.8
, Issue.10
, pp. 215
-
-
Chin, S.F.1
Teschendorff, A.E.2
Marioni, J.C.3
Wang, Y.4
Barbosa-Morais, N.L.5
Thorne, N.P.6
-
118
-
-
33745090898
-
Differential disruption of cell cycle pathways in small cell and non-small cell lung cancer
-
DOI 10.1038/sj.bjc.6603167, PII 6603167
-
BP Coe WW Lockwood L Girard R Chari C Macaulay S Lam, et al. 2006 Differential disruption of cell cycle pathways in small cell and non-small cell lung cancer British Journal of Cancer 94 12 1927 1935 16705311 (Pubitemid 43882587)
-
(2006)
British Journal of Cancer
, vol.94
, Issue.12
, pp. 1927-1935
-
-
Coe, B.P.1
Lockwood, W.W.2
Girard, L.3
Chari, R.4
MacAulay, C.5
Lam, S.6
Gazdar, A.F.7
Minna, J.D.8
Lam, W.L.9
-
119
-
-
70350641014
-
SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas
-
19801978
-
AJ Bass H Watanabe CH Mermel S Yu S Perner RG Verhaak, et al. 2009 SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas Nature Genetics 41 11 1238 1242 19801978
-
(2009)
Nature Genetics
, vol.41
, Issue.11
, pp. 1238-1242
-
-
Bass, A.J.1
Watanabe, H.2
Mermel, C.H.3
Yu, S.4
Perner, S.5
Verhaak, R.G.6
-
120
-
-
21844478747
-
Integrative genomic analyses identify MITF as a lineage survival oncogene amplified in malignant melanoma
-
16001072
-
LA Garraway HR Widlund MA Rubin G Getz AJ Berger S Ramaswamy, et al. 2005 Integrative genomic analyses identify MITF as a lineage survival oncogene amplified in malignant melanoma Nature 436 7047 117 122 16001072
-
(2005)
Nature
, vol.436
, Issue.7047
, pp. 117-122
-
-
Garraway, L.A.1
Widlund, H.R.2
Rubin, M.A.3
Getz, G.4
Berger, A.J.5
Ramaswamy, S.6
-
121
-
-
36248980204
-
Characterizing the cancer genome in lung adenocarcinoma
-
17982442
-
BA Weir MS Woo G Getz S Perner L Ding R Beroukhim, et al. 2007 Characterizing the cancer genome in lung adenocarcinoma Nature 450 7171 893 898 17982442
-
(2007)
Nature
, vol.450
, Issue.7171
, pp. 893-898
-
-
Weir, B.A.1
Woo, M.S.2
Getz, G.3
Perner, S.4
Ding, L.5
Beroukhim, R.6
-
122
-
-
44449178497
-
Genomic profiling identifies TITF1 as a lineage-specific oncogene amplified in lung cancer
-
DOI 10.1038/sj.onc.1211012, PII 1211012
-
KA Kwei YH Kim L Girard J Kao M Pacyna-Gengelbach K Salari, et al. 2008 Genomic profiling identifies TITF1 as a lineage-specific oncogene amplified in lung cancer Oncogene 27 25 3635 3640 18212743 (Pubitemid 351793793)
-
(2008)
Oncogene
, vol.27
, Issue.25
, pp. 3635-3640
-
-
Kwei, K.A.1
Kim, Y.H.2
Girard, L.3
Kao, J.4
Pacyna-Gengelbach, M.5
Salari, K.6
Lee, J.7
Choi, Y.-L.8
Sato, M.9
Wang, P.10
Hernandez-Boussard, T.11
Gazdar, A.F.12
Petersen, I.13
Minna, J.D.14
Pollack, J.R.15
-
124
-
-
73349116605
-
Genetic variations as cancer prognostic markers: Review and update
-
19639655
-
S Savas G Liu 2009 Genetic variations as cancer prognostic markers: Review and update Human Mutation 30 10 1369 1377 19639655
-
(2009)
Human Mutation
, vol.30
, Issue.10
, pp. 1369-1377
-
-
Savas, S.1
Liu, G.2
-
125
-
-
67349209853
-
Next-generation DNA sequencing techniques
-
19429539
-
WJ Ansorge 2009 Next-generation DNA sequencing techniques New Biotechnology 25 4 195 203 19429539
-
(2009)
New Biotechnology
, vol.25
, Issue.4
, pp. 195-203
-
-
Ansorge, W.J.1
-
126
-
-
67649406102
-
Mutation of FOXL2 in granulosa-cell tumors of the ovary
-
19516027
-
SP Shah M Kobel J Senz RD Morin BA Clarke KC Wiegand, et al. 2009 Mutation of FOXL2 in granulosa-cell tumors of the ovary New England Journal of Medicine 360 26 2719 2729 19516027
-
(2009)
New England Journal of Medicine
, vol.360
, Issue.26
, pp. 2719-2729
-
-
Shah, S.P.1
Kobel, M.2
Senz, J.3
Morin, R.D.4
Clarke, B.A.5
Wiegand, K.C.6
-
127
-
-
33947101019
-
Patterns of somatic mutation in human cancer genomes
-
17344846
-
C Greenman P Stephens R Smith GL Dalgliesh C Hunter G Bignell, et al. 2007 Patterns of somatic mutation in human cancer genomes Nature 446 7132 153 158 17344846
-
(2007)
Nature
, vol.446
, Issue.7132
, pp. 153-158
-
-
Greenman, C.1
Stephens, P.2
Smith, R.3
Dalgliesh, G.L.4
Hunter, C.5
Bignell, G.6
-
129
-
-
0021914111
-
Genetic origin of mutations predisposing to retinoblastoma
-
3983638
-
WK Cavenee MF Hansen M Nordenskjold E Kock I Maumenee JA Squire, et al. 1985 Genetic origin of mutations predisposing to retinoblastoma Science 228 4698 501 503 3983638
-
(1985)
Science
, vol.228
, Issue.4698
, pp. 501-503
-
-
Cavenee, W.K.1
Hansen, M.F.2
Nordenskjold, M.3
Kock, E.4
Maumenee, I.5
Squire, J.A.6
-
131
-
-
33748948902
-
Altered promoter usage characterizes monoallelic transcription arising with ERBB2 amplification in human breast cancers
-
16883574
-
CC Benz V Fedele F Xu B Ylstra D Ginzinger M Yu, et al. 2006 Altered promoter usage characterizes monoallelic transcription arising with ERBB2 amplification in human breast cancers Genes, Chromosomes, and Cancer 45 11 983 994 16883574
-
(2006)
Genes, Chromosomes, and Cancer
, vol.45
, Issue.11
, pp. 983-994
-
-
Benz, C.C.1
Fedele, V.2
Xu, F.3
Ylstra, B.4
Ginzinger, D.5
Yu, M.6
-
132
-
-
33746972191
-
Allele-specific amplification in cancer revealed by SNP array analysis
-
16322765
-
T LaFramboise BA Weir X Zhao R Beroukhim C Li D Harrington, et al. 2005 Allele-specific amplification in cancer revealed by SNP array analysis PLoS Comput Biol 1 6 e65 16322765
-
(2005)
PLoS Comput Biol
, vol.1
, Issue.6
, pp. 65
-
-
Laframboise, T.1
Weir, B.A.2
Zhao, X.3
Beroukhim, R.4
Li, C.5
Harrington, D.6
-
133
-
-
36248987862
-
SNP-Array genotyping and spectral karyotyping reveal uniparental disomy as early mutational event in MSS- and MSI-colorectal cancer cell lines
-
18000373
-
R Melcher O Al-Taie T Kudlich E Hartmann S Maisch C Steinlein, et al. 2007 SNP-Array genotyping and spectral karyotyping reveal uniparental disomy as early mutational event in MSS- and MSI-colorectal cancer cell lines Cytogenetic and Genome Research 118 2-4 214 221 18000373
-
(2007)
Cytogenetic and Genome Research
, vol.118
, Issue.24
, pp. 214-221
-
-
Melcher, R.1
Al-Taie, O.2
Kudlich, T.3
Hartmann, E.4
Maisch, S.5
Steinlein, C.6
-
134
-
-
34247477205
-
Polymorphisms, mutations, and amplification of the EGFR gene in non-small cell lung cancers
-
17455987
-
M Nomura H Shigematsu L Li M Suzuki T Takahashi P Estess, et al. 2007 Polymorphisms, mutations, and amplification of the EGFR gene in non-small cell lung cancers PLoS Medicine 4 4 e125 17455987
-
(2007)
PLoS Medicine
, vol.4
, Issue.4
, pp. 125
-
-
Nomura, M.1
Shigematsu, H.2
Li, L.3
Suzuki, M.4
Takahashi, T.5
Estess, P.6
-
135
-
-
70350532521
-
Lung adenocarcinoma with EGFR amplification has distinct clinicopathologic and molecular features in never-smokers
-
19826035
-
LM Sholl BY Yeap AJ Iafrate AJ Holmes-Tisch YP Chou MT Wu, et al. 2009 Lung adenocarcinoma with EGFR amplification has distinct clinicopathologic and molecular features in never-smokers Cancer Research 69 21 8341 8348 19826035
-
(2009)
Cancer Research
, vol.69
, Issue.21
, pp. 8341-8348
-
-
Sholl, L.M.1
Yeap, B.Y.2
Iafrate, A.J.3
Holmes-Tisch, A.J.4
Chou, Y.P.5
Wu, M.T.6
-
136
-
-
70449433271
-
Oncogene mutations, copy number gains and mutant allele specific imbalance (MASI) frequently occur together in tumor cells
-
19826477
-
J Soh N Okumura WW Lockwood H Yamamoto H Shigematsu W Zhang, et al. 2009 Oncogene mutations, copy number gains and mutant allele specific imbalance (MASI) frequently occur together in tumor cells PLoS ONE 4 10 e7464 19826477
-
(2009)
PLoS ONE
, vol.4
, Issue.10
, pp. 7464
-
-
Soh, J.1
Okumura, N.2
Lockwood, W.W.3
Yamamoto, H.4
Shigematsu, H.5
Zhang, W.6
-
137
-
-
59149099298
-
Emerging paradigms in cancer genetics: Some important findings from high-density single nucleotide polymorphism array studies
-
19155292
-
MD Bacolod GS Schemmann SF Giardina P Paty DA Notterman F Barany 2009 Emerging paradigms in cancer genetics: some important findings from high-density single nucleotide polymorphism array studies Cancer Research 69 3 723 727 19155292
-
(2009)
Cancer Research
, vol.69
, Issue.3
, pp. 723-727
-
-
Bacolod, M.D.1
Schemmann, G.S.2
Giardina, S.F.3
Paty, P.4
Notterman, D.A.5
Barany, F.6
-
138
-
-
0034098812
-
Mechanisms leading to uniparental disomy and their clinical consequences
-
10797485
-
WP Robinson 2000 Mechanisms leading to uniparental disomy and their clinical consequences Bioessays 22 5 452 459 10797485
-
(2000)
Bioessays
, vol.22
, Issue.5
, pp. 452-459
-
-
Robinson, W.P.1
-
140
-
-
0026529765
-
Mechanisms of loss of heterozygosity in retinoblastoma
-
1544317
-
X Zhu JM Dunn AD Goddard JA Squire A Becker RA Phillips, et al. 1992 Mechanisms of loss of heterozygosity in retinoblastoma Cytogenetics and Cell Genetics 59 4 248 252 1544317
-
(1992)
Cytogenetics and Cell Genetics
, vol.59
, Issue.4
, pp. 248-252
-
-
Zhu, X.1
Dunn, J.M.2
Goddard, A.D.3
Squire, J.A.4
Becker, A.5
Phillips, R.A.6
-
141
-
-
43249121366
-
SNP array karyotyping allows for the detection of uniparental disomy and cryptic chromosomal abnormalities in MDS/MPD-U and MPD
-
18030353
-
LP Gondek AJ Dunbar H Szpurka MA McDevitt JP Maciejewski 2007 SNP array karyotyping allows for the detection of uniparental disomy and cryptic chromosomal abnormalities in MDS/MPD-U and MPD PLoS ONE 2 11 e1225 18030353
-
(2007)
PLoS ONE
, vol.2
, Issue.11
, pp. 1225
-
-
Gondek, L.P.1
Dunbar, A.J.2
Szpurka, H.3
McDevitt, M.A.4
MacIejewski, J.P.5
-
142
-
-
70449715477
-
New lesions detected by single nucleotide polymorphism array-based chromosomal analysis have important clinical impact in acute myeloid leukemia
-
19770377
-
RV Tiu LP Gondek CL O'Keefe J Huh MA Sekeres P Elson, et al. 2009 New lesions detected by single nucleotide polymorphism array-based chromosomal analysis have important clinical impact in acute myeloid leukemia Journal of Clinical Oncology 27 31 5219 5226 19770377
-
(2009)
Journal of Clinical Oncology
, vol.27
, Issue.31
, pp. 5219-5226
-
-
Tiu, R.V.1
Gondek, L.P.2
O'Keefe, C.L.3
Huh, J.4
Sekeres, M.A.5
Elson, P.6
-
143
-
-
34347229790
-
Highly sensitive method for genomewide detection of allelic composition in nonpaired, primary tumor specimens by use of affymetrix single-nucleotide- polymorphism genotyping microarrays
-
17564968
-
G Yamamoto Y Nannya M Kato M Sanada RL Levine N Kawamata, et al. 2007 Highly sensitive method for genomewide detection of allelic composition in nonpaired, primary tumor specimens by use of affymetrix single-nucleotide- polymorphism genotyping microarrays American Journal of Human Genetics 81 1 114 126 17564968
-
(2007)
American Journal of Human Genetics
, vol.81
, Issue.1
, pp. 114-126
-
-
Yamamoto, G.1
Nannya, Y.2
Kato, M.3
Sanada, M.4
Levine, R.L.5
Kawamata, N.6
-
144
-
-
59649114350
-
Uniparentalism in sporadic colorectal cancer is independent of imprint status, and coordinate for chromosomes 14 and 18
-
19215787
-
HK Darbary SS Dutt SJ Sait NJ Nowak RE Heinaman DL Stoler, et al. 2009 Uniparentalism in sporadic colorectal cancer is independent of imprint status, and coordinate for chromosomes 14 and 18 Cancer Genetics and Cytogenetics 189 2 77 86 19215787
-
(2009)
Cancer Genetics and Cytogenetics
, vol.189
, Issue.2
, pp. 77-86
-
-
Darbary, H.K.1
Dutt, S.S.2
Sait, S.J.3
Nowak, N.J.4
Heinaman, R.E.5
Stoler, D.L.6
-
145
-
-
67650401377
-
Frequent CBL mutations associated with 11q acquired uniparental disomy in myeloproliferative neoplasms
-
19387008
-
FH Grand CE Hidalgo-Curtis T Ernst K Zoi C Zoi C McGuire, et al. 2009 Frequent CBL mutations associated with 11q acquired uniparental disomy in myeloproliferative neoplasms Blood 113 24 6182 6192 19387008
-
(2009)
Blood
, vol.113
, Issue.24
, pp. 6182-6192
-
-
Grand, F.H.1
Hidalgo-Curtis, C.E.2
Ernst, T.3
Zoi, K.4
Zoi, C.5
McGuire, C.6
-
146
-
-
44449151696
-
Novel regions of acquired uniparental disomy discovered in acute myeloid leukemia
-
18506749
-
M Gupta M Raghavan RE Gale C Chelala C Allen G Molloy, et al. 2008 Novel regions of acquired uniparental disomy discovered in acute myeloid leukemia Genes, Chromosomes, and Cancer 47 9 729 739 18506749
-
(2008)
Genes, Chromosomes, and Cancer
, vol.47
, Issue.9
, pp. 729-739
-
-
Gupta, M.1
Raghavan, M.2
Gale, R.E.3
Chelala, C.4
Allen, C.5
Molloy, G.6
-
147
-
-
67650091214
-
Identified hidden genomic changes in mantle cell lymphoma using high-resolution single nucleotide polymorphism genomic array
-
19477219
-
N Kawamata S Ogawa S Gueller SH Ross T Huynh J Chen, et al. 2009 Identified hidden genomic changes in mantle cell lymphoma using high-resolution single nucleotide polymorphism genomic array Experimental Hematology 37 8 937 946 19477219
-
(2009)
Experimental Hematology
, vol.37
, Issue.8
, pp. 937-946
-
-
Kawamata, N.1
Ogawa, S.2
Gueller, S.3
Ross, S.H.4
Huynh, T.5
Chen, J.6
-
148
-
-
74949108515
-
Mutations of e3 ubiquitin ligase cbl family members constitute a novel common pathogenic lesion in myeloid malignancies
-
19901108
-
H Makishima H Cazzolli H Szpurka A Dunbar R Tiu J Huh, et al. 2009 Mutations of e3 ubiquitin ligase cbl family members constitute a novel common pathogenic lesion in myeloid malignancies Journal of Clinical Oncology 27 36 6109 6116 19901108
-
(2009)
Journal of Clinical Oncology
, vol.27
, Issue.36
, pp. 6109-6116
-
-
Makishima, H.1
Cazzolli, H.2
Szpurka, H.3
Dunbar, A.4
Tiu, R.5
Huh, J.6
-
149
-
-
69149100639
-
Acquired copy number alterations in adult acute myeloid leukemia genomes
-
19651600
-
MJ Walter JE Payton RE Ries WD Shannon H Deshmukh Y Zhao, et al. 2009 Acquired copy number alterations in adult acute myeloid leukemia genomes Proceedings of the National Academy of Sciences of the United States of America 106 31 12950 12955 19651600
-
(2009)
Proceedings of the National Academy of Sciences of the United States of America
, vol.106
, Issue.31
, pp. 12950-12955
-
-
Walter, M.J.1
Payton, J.E.2
Ries, R.E.3
Shannon, W.D.4
Deshmukh, H.5
Zhao, Y.6
-
150
-
-
66349133436
-
High-resolution genomic copy number profiling of glioblastoma multiforme by single nucleotide polymorphism DNA microarray
-
19435819
-
D Yin S Ogawa N Kawamata P Tunici G Finocchiaro M Eoli, et al. 2009 High-resolution genomic copy number profiling of glioblastoma multiforme by single nucleotide polymorphism DNA microarray Mol Cancer Res 7 5 665 677 19435819
-
(2009)
Mol Cancer Res
, vol.7
, Issue.5
, pp. 665-677
-
-
Yin, D.1
Ogawa, S.2
Kawamata, N.3
Tunici, P.4
Finocchiaro, G.5
Eoli, M.6
-
151
-
-
34249111848
-
Allelic imbalances and microdeletions affecting the PTPRD gene in cutaneous squamous cell carcinomas detected using single nucleotide polymorphism microarray analysis
-
17420988
-
KJ Purdie SR Lambert MT Teh T Chaplin G Molloy M Raghavan, et al. 2007 Allelic imbalances and microdeletions affecting the PTPRD gene in cutaneous squamous cell carcinomas detected using single nucleotide polymorphism microarray analysis Genes, Chromosomes, and Cancer 46 7 661 669 17420988
-
(2007)
Genes, Chromosomes, and Cancer
, vol.46
, Issue.7
, pp. 661-669
-
-
Purdie, K.J.1
Lambert, S.R.2
Teh, M.T.3
Chaplin, T.4
Molloy, G.5
Raghavan, M.6
-
152
-
-
70349864986
-
Chromosomal abnormalities and novel disease-related regions in progression from Barrett's esophagus to esophageal adenocarcinoma
-
T Akagi T Ito M Kato Z Jin Y Cheng T Kan, et al. 2009 Chromosomal abnormalities and novel disease-related regions in progression from Barrett's esophagus to esophageal adenocarcinoma International Journal of Cancer 125 10 2349 2359
-
(2009)
International Journal of Cancer
, vol.125
, Issue.10
, pp. 2349-2359
-
-
Akagi, T.1
Ito, T.2
Kato, M.3
Jin, Z.4
Cheng, Y.5
Kan, T.6
-
154
-
-
46249117780
-
Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation
-
18568024
-
K Kerkel A Spadola E Yuan J Kosek L Jiang E Hod, et al. 2008 Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation Nature Genetics 40 7 904 908 18568024
-
(2008)
Nature Genetics
, vol.40
, Issue.7
, pp. 904-908
-
-
Kerkel, K.1
Spadola, A.2
Yuan, E.3
Kosek, J.4
Jiang, L.5
Hod, E.6
-
155
-
-
33847065486
-
The epigenomics of cancer
-
17320506
-
PA Jones SB Baylin 2007 The epigenomics of cancer Cell 128 4 683 692 17320506
-
(2007)
Cell
, vol.128
, Issue.4
, pp. 683-692
-
-
Jones, P.A.1
Baylin, S.B.2
-
156
-
-
40849139208
-
Epigenetics in cancer
-
18337604
-
M Esteller 2008 Epigenetics in cancer New England Journal of Medicine 358 11 1148 1159 18337604
-
(2008)
New England Journal of Medicine
, vol.358
, Issue.11
, pp. 1148-1159
-
-
Esteller, M.1
-
157
-
-
34249275353
-
Phenotypic plasticity and the epigenetics of human disease
-
17522677
-
AP Feinberg 2007 Phenotypic plasticity and the epigenetics of human disease Nature 447 7143 433 440 17522677
-
(2007)
Nature
, vol.447
, Issue.7143
, pp. 433-440
-
-
Feinberg, A.P.1
-
159
-
-
0023848637
-
Reduced genomic 5-methylcytosine content in human colonic neoplasia
-
3342396
-
AP Feinberg CW Gehrke KC Kuo M Ehrlich 1988 Reduced genomic 5-methylcytosine content in human colonic neoplasia Cancer Research 48 5 1159 1161 3342396
-
(1988)
Cancer Research
, vol.48
, Issue.5
, pp. 1159-1161
-
-
Feinberg, A.P.1
Gehrke, C.W.2
Kuo, K.C.3
Ehrlich, M.4
-
160
-
-
1042278765
-
The history of cancer epigenetics
-
14732866
-
AP Feinberg B Tycko 2004 The history of cancer epigenetics Nature Reviews Cancer 4 2 143 153 14732866
-
(2004)
Nature Reviews Cancer
, vol.4
, Issue.2
, pp. 143-153
-
-
Feinberg, A.P.1
Tycko, B.2
-
161
-
-
61549112191
-
Epigenomics and breast cancer
-
19072646
-
PK Lo S Sukumar 2008 Epigenomics and breast cancer Pharmacogenomics 9 12 1879 1902 19072646
-
(2008)
Pharmacogenomics
, vol.9
, Issue.12
, pp. 1879-1902
-
-
Lo, P.K.1
Sukumar, S.2
-
163
-
-
10344260184
-
CpG island methylator phenotype in cancer
-
15573120
-
JP Issa 2004 CpG island methylator phenotype in cancer Nature Reviews Cancer 4 12 988 993 15573120
-
(2004)
Nature Reviews Cancer
, vol.4
, Issue.12
, pp. 988-993
-
-
Issa, J.P.1
-
164
-
-
63449140854
-
CpG island methylator phenotype predicts progression of malignant melanoma
-
19223509
-
A Tanemura AM Terando MS Sim AQ van Hoesel MF de Maat DL Morton, et al. 2009 CpG island methylator phenotype predicts progression of malignant melanoma Clinical Cancer Research 15 5 1801 1807 19223509
-
(2009)
Clinical Cancer Research
, vol.15
, Issue.5
, pp. 1801-1807
-
-
Tanemura, A.1
Terando, A.M.2
Sim, M.S.3
Van Hoesel, A.Q.4
De Maat, M.F.5
Morton, D.L.6
-
165
-
-
4644264667
-
Global methylation profiling of lung cancer identifies novel methylated genes
-
11571631
-
Z Dai RR Lakshmanan WG Zhu DJ Smiraglia LJ Rush MC Fruhwald, et al. 2001 Global methylation profiling of lung cancer identifies novel methylated genes Neoplasia 3 4 314 323 11571631
-
(2001)
Neoplasia
, vol.3
, Issue.4
, pp. 314-323
-
-
Dai, Z.1
Lakshmanan, R.R.2
Zhu, W.G.3
Smiraglia, D.J.4
Rush, L.J.5
Fruhwald, M.C.6
-
166
-
-
0035829691
-
Silencing of HTR1B and reduced expression of EDN1 in human lung cancers, revealed by methylation-sensitive representational difference analysis
-
11709722
-
D Takai Y Yagi K Wakazono N Ohishi Y Morita T Sugimura, et al. 2001 Silencing of HTR1B and reduced expression of EDN1 in human lung cancers, revealed by methylation-sensitive representational difference analysis Oncogene 20 51 7505 7513 11709722
-
(2001)
Oncogene
, vol.20
, Issue.51
, pp. 7505-7513
-
-
Takai, D.1
Yagi, Y.2
Wakazono, K.3
Ohishi, N.4
Morita, Y.5
Sugimura, T.6
-
167
-
-
23044499067
-
Distinct epigenetic changes in the stromal cells of breast cancers
-
16007089
-
M Hu J Yao L Cai KE Bachman F van den Brule V Velculescu, et al. 2005 Distinct epigenetic changes in the stromal cells of breast cancers Nature Genetics 37 8 899 905 16007089
-
(2005)
Nature Genetics
, vol.37
, Issue.8
, pp. 899-905
-
-
Hu, M.1
Yao, J.2
Cai, L.3
Bachman, K.E.4
Van Den Brule, F.5
Velculescu, V.6
-
168
-
-
43149098062
-
Comprehensive high-throughput arrays for relative methylation (CHARM)
-
18316654
-
RA Irizarry C Ladd-Acosta B Carvalho H Wu SA Brandenburg JA Jeddeloh, et al. 2008 Comprehensive high-throughput arrays for relative methylation (CHARM) Genome Research 18 5 780 790 18316654
-
(2008)
Genome Research
, vol.18
, Issue.5
, pp. 780-790
-
-
Irizarry, R.A.1
Ladd-Acosta, C.2
Carvalho, B.3
Wu, H.4
Brandenburg, S.A.5
Jeddeloh, J.A.6
-
169
-
-
0035577862
-
Dissecting complex epigenetic alterations in breast cancer using CpG island microarrays
-
11731411
-
PS Yan CM Chen H Shi F Rahmatpanah SH Wei CW Caldwell, et al. 2001
-
(2001)
Cancer Research
, vol.61
, Issue.23
, pp. 8375-8380
-
-
Yan, P.S.1
Chen, C.M.2
Shi, H.3
Rahmatpanah, F.4
Wei, S.H.5
Caldwell, C.W.6
-
170
-
-
4043086483
-
A DNA microarray-based methylation-sensitive (MS)-AFLP hybridization method for genetic and epigenetic analyses
-
15146327
-
F Yamamoto M Yamamoto 2004 A DNA microarray-based methylation-sensitive (MS)-AFLP hybridization method for genetic and epigenetic analyses Mol Genet Genomics 271 6 678 686 15146327
-
(2004)
Mol Genet Genomics
, vol.271
, Issue.6
, pp. 678-686
-
-
Yamamoto, F.1
Yamamoto, M.2
-
171
-
-
47949103491
-
Genome-wide profiling of methylated promoters in pancreatic adenocarcinoma
-
18535405
-
N Omura CP Li A Li SM Hong K Walter A Jimeno, et al. 2008 Genome-wide profiling of methylated promoters in pancreatic adenocarcinoma Cancer Biol Ther 7 7 1146 1156 18535405
-
(2008)
Cancer Biol Ther
, vol.7
, Issue.7
, pp. 1146-1156
-
-
Omura, N.1
Li, C.P.2
Li, A.3
Hong, S.M.4
Walter, K.5
Jimeno, A.6
-
172
-
-
0035710246
-
DNA methylation analysis by MethyLight technology
-
11846615
-
BN Trinh TI Long PW Laird 2001 DNA methylation analysis by MethyLight technology Methods 25 4 456 462 11846615
-
(2001)
Methods
, vol.25
, Issue.4
, pp. 456-462
-
-
Trinh, B.N.1
Long, T.I.2
Laird, P.W.3
-
174
-
-
44949259146
-
Widespread epigenetic abnormalities suggest a broad DNA methylation erasure defect in abnormal human sperm
-
18074014
-
S Houshdaran VK Cortessis K Siegmund A Yang PW Laird RZ Sokol 2007 Widespread epigenetic abnormalities suggest a broad DNA methylation erasure defect in abnormal human sperm PLoS ONE 2 12 e1289 18074014
-
(2007)
PLoS ONE
, vol.2
, Issue.12
, pp. 1289
-
-
Houshdaran, S.1
Cortessis, V.K.2
Siegmund, K.3
Yang, A.4
Laird, P.W.5
Sokol, R.Z.6
-
175
-
-
68549135349
-
Copy number variation has little impact on bead-array-based measures of DNA methylation
-
19542153
-
EA Houseman BC Christensen MR Karagas MR Wrensch HH Nelson JL Wiemels, et al. 2009 Copy number variation has little impact on bead-array-based measures of DNA methylation Bioinformatics 25 16 1999 2005 19542153
-
(2009)
Bioinformatics
, vol.25
, Issue.16
, pp. 1999-2005
-
-
Houseman, E.A.1
Christensen, B.C.2
Karagas, M.R.3
Wrensch, M.R.4
Nelson, H.H.5
Wiemels, J.L.6
-
177
-
-
34047274820
-
Large-scale CpG methylation analysis identifies novel candidate genes and reveals methylation hotspots in acute lymphoblastic leukemia
-
17363581
-
KH Taylor KE Pena-Hernandez JW Davis GL Arthur DJ Duff H Shi, et al. 2007 Large-scale CpG methylation analysis identifies novel candidate genes and reveals methylation hotspots in acute lymphoblastic leukemia Cancer Research 67 6 2617 2625 17363581
-
(2007)
Cancer Research
, vol.67
, Issue.6
, pp. 2617-2625
-
-
Taylor, K.H.1
Pena-Hernandez, K.E.2
Davis, J.W.3
Arthur, G.L.4
Duff, D.J.5
Shi, H.6
-
178
-
-
34047116826
-
Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
-
17334365
-
M Weber I Hellmann MB Stadler L Ramos S Paabo M Rebhan, et al. 2007 Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome Nature Genetics 39 4 457 466 17334365
-
(2007)
Nature Genetics
, vol.39
, Issue.4
, pp. 457-466
-
-
Weber, M.1
Hellmann, I.2
Stadler, M.B.3
Ramos, L.4
Paabo, S.5
Rebhan, M.6
-
179
-
-
27744443057
-
Methylated-CpG island recovery assay: A new technique for the rapid detection of methylated-CpG islands in cancer
-
16025148
-
T Rauch GP Pfeifer 2005 Methylated-CpG island recovery assay: a new technique for the rapid detection of methylated-CpG islands in cancer Laboratory Investigation 85 9 1172 1180 16025148
-
(2005)
Laboratory Investigation
, vol.85
, Issue.9
, pp. 1172-1180
-
-
Rauch, T.1
Pfeifer, G.P.2
-
180
-
-
37549066863
-
Discovery of epigenetically silenced genes by methylated DNA immunoprecipitation in colon cancer cells
-
18089774
-
FV Jacinto E Ballestar S Ropero M Esteller 2007 Discovery of epigenetically silenced genes by methylated DNA immunoprecipitation in colon cancer cells Cancer Research 67 24 11481 11486 18089774
-
(2007)
Cancer Research
, vol.67
, Issue.24
, pp. 11481-11486
-
-
Jacinto, F.V.1
Ballestar, E.2
Ropero, S.3
Esteller, M.4
-
181
-
-
0348134871
-
Methyl-CpG binding proteins identify novel sites of epigenetic inactivation in human cancer
-
14633992
-
E Ballestar MF Paz L Valle S Wei MF Fraga J Espada, et al. 2003 Methyl-CpG binding proteins identify novel sites of epigenetic inactivation in human cancer EMBO Journal 22 23 6335 6345 14633992
-
(2003)
EMBO Journal
, vol.22
, Issue.23
, pp. 6335-6345
-
-
Ballestar, E.1
Paz, M.F.2
Valle, L.3
Wei, S.4
Fraga, M.F.5
Espada, J.6
-
182
-
-
77449127799
-
MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome
-
doi:10.1093/nar/gkp992
-
Serre, D., Lee, B. H., & Ting, A. H. (2009). MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome. Nucleic Acids Research. doi: 10.1093/nar/gkp992.
-
(2009)
Nucleic Acids Research
-
-
Serre, D.1
Lee, B.H.2
Ting, A.H.3
-
183
-
-
46949098742
-
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
-
18612301
-
TA Down VK Rakyan DJ Turner P Flicek H Li E Kulesha, et al. 2008 A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis Nature Biotechnology 26 7 779 785 18612301
-
(2008)
Nature Biotechnology
, vol.26
, Issue.7
, pp. 779-785
-
-
Down, T.A.1
Rakyan, V.K.2
Turner, D.J.3
Flicek, P.4
Li, H.5
Kulesha, E.6
-
185
-
-
53549104134
-
MEDME: An experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment
-
18765822
-
M Pelizzola Y Koga AE Urban M Krauthammer S Weissman R Halaban, et al. 2008 MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment Genome Research 18 10 1652 1659 18765822
-
(2008)
Genome Research
, vol.18
, Issue.10
, pp. 1652-1659
-
-
Pelizzola, M.1
Koga, Y.2
Urban, A.E.3
Krauthammer, M.4
Weissman, S.5
Halaban, R.6
-
186
-
-
70350710509
-
Development of a novel output value for quantitative assessment in methylated DNA immunoprecipitation-CpG island microarray analysis
-
19767598
-
S Yamashita K Hosoya K Gyobu H Takeshima T Ushijima 2009 Development of a novel output value for quantitative assessment in methylated DNA immunoprecipitation-CpG island microarray analysis DNA Research 16 5 275 286 19767598
-
(2009)
DNA Research
, vol.16
, Issue.5
, pp. 275-286
-
-
Yamashita, S.1
Hosoya, K.2
Gyobu, K.3
Takeshima, H.4
Ushijima, T.5
-
187
-
-
59149084538
-
The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores
-
19151715
-
RA Irizarry C Ladd-Acosta B Wen Z Wu C Montano P Onyango, et al. 2009 The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores Nature Genetics 41 2 178 186 19151715
-
(2009)
Nature Genetics
, vol.41
, Issue.2
, pp. 178-186
-
-
Irizarry, R.A.1
Ladd-Acosta, C.2
Wen, B.3
Wu, Z.4
Montano, C.5
Onyango, P.6
-
189
-
-
33646369393
-
Epigenetic remodeling in colorectal cancer results in coordinate gene suppression across an entire chromosome band
-
16642018
-
J Frigola J Song C Stirzaker RA Hinshelwood MA Peinado SJ Clark 2006 Epigenetic remodeling in colorectal cancer results in coordinate gene suppression across an entire chromosome band Nature Genetics 38 5 540 549 16642018
-
(2006)
Nature Genetics
, vol.38
, Issue.5
, pp. 540-549
-
-
Frigola, J.1
Song, J.2
Stirzaker, C.3
Hinshelwood, R.A.4
Peinado, M.A.5
Clark, S.J.6
-
190
-
-
34247373911
-
Pharmacologic inhibition of epigenetic modifications, coupled with gene expression profiling, reveals novel targets of aberrant DNA methylation and histone deacetylation in lung cancer
-
17043644
-
S Zhong CR Fields N Su YX Pan KD Robertson 2007 Pharmacologic inhibition of epigenetic modifications, coupled with gene expression profiling, reveals novel targets of aberrant DNA methylation and histone deacetylation in lung cancer Oncogene 26 18 2621 2634 17043644
-
(2007)
Oncogene
, vol.26
, Issue.18
, pp. 2621-2634
-
-
Zhong, S.1
Fields, C.R.2
Su, N.3
Pan, Y.X.4
Robertson, K.D.5
-
191
-
-
66449121652
-
Finding the fifth base: Genome-wide sequencing of cytosine methylation
-
19273618
-
R Lister JR Ecker 2009 Finding the fifth base: genome-wide sequencing of cytosine methylation Genome Research 19 6 959 966 19273618
-
(2009)
Genome Research
, vol.19
, Issue.6
, pp. 959-966
-
-
Lister, R.1
Ecker, J.R.2
-
192
-
-
70450169678
-
Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns
-
19776032
-
HM Byun KD Siegmund F Pan DJ Weisenberger G Kanel PW Laird, et al. 2009 Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns Human Molecular Genetics 18 24 4808 4817 19776032
-
(2009)
Human Molecular Genetics
, vol.18
, Issue.24
, pp. 4808-4817
-
-
Byun, H.M.1
Siegmund, K.D.2
Pan, F.3
Weisenberger, D.J.4
Kanel, G.5
Laird, P.W.6
-
193
-
-
23044514669
-
Epigenetic differences arise during the lifetime of monozygotic twins
-
16009939
-
MF Fraga E Ballestar MF Paz S Ropero F Setien ML Ballestar, et al. 2005 Epigenetic differences arise during the lifetime of monozygotic twins Proceedings of the National Academy of Sciences of the United States of America 102 30 10604 10609 16009939
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.30
, pp. 10604-10609
-
-
Fraga, M.F.1
Ballestar, E.2
Paz, M.F.3
Ropero, S.4
Setien, F.5
Ballestar, M.L.6
-
194
-
-
64349106730
-
Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming
-
19330000
-
J Deng R Shoemaker B Xie A Gore EM LeProust J Antosiewicz-Bourget, et al. 2009 Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming Nature Biotechnology 27 4 353 360 19330000
-
(2009)
Nature Biotechnology
, vol.27
, Issue.4
, pp. 353-360
-
-
Deng, J.1
Shoemaker, R.2
Xie, B.3
Gore, A.4
Leproust, E.M.5
Antosiewicz-Bourget, J.6
-
195
-
-
0343621494
-
Aberrant CpG-island methylation has non-random and tumour-type-specific patterns
-
10655057
-
JF Costello MC Fruhwald DJ Smiraglia LJ Rush GP Robertson X Gao, et al. 2000 Aberrant CpG-island methylation has non-random and tumour-type-specific patterns Nature Genetics 24 2 132 138 10655057
-
(2000)
Nature Genetics
, vol.24
, Issue.2
, pp. 132-138
-
-
Costello, J.F.1
Fruhwald, M.C.2
Smiraglia, D.J.3
Rush, L.J.4
Robertson, G.P.5
Gao, X.6
-
196
-
-
0020522019
-
Tissue-specific differences in DNA methylation in various mammals
-
6860672
-
MA Gama-Sosa RM Midgett VA Slagel S Githens KC Kuo CW Gehrke, et al. 1983 Tissue-specific differences in DNA methylation in various mammals Biochimica et Biophysica Acta 740 2 212 219 6860672
-
(1983)
Biochimica et Biophysica Acta
, vol.740
, Issue.2
, pp. 212-219
-
-
Gama-Sosa, M.A.1
Midgett, R.M.2
Slagel, V.A.3
Githens, S.4
Kuo, K.C.5
Gehrke, C.W.6
-
197
-
-
0344321897
-
Impact of aging on DNA methylation
-
12726774
-
B Richardson 2003 Impact of aging on DNA methylation Ageing Research Reviews 2 3 245 261 12726774
-
(2003)
Ageing Research Reviews
, vol.2
, Issue.3
, pp. 245-261
-
-
Richardson, B.1
-
199
-
-
0034853634
-
Frequent loss of imprinting of IGF2 and MEST in lung adenocarcinoma
-
11536368
-
M Kohda H Hoshiya M Katoh I Tanaka R Masuda T Takemura, et al. 2001 Frequent loss of imprinting of IGF2 and MEST in lung adenocarcinoma Molecular Carcinogenesis 31 4 184 191 11536368
-
(2001)
Molecular Carcinogenesis
, vol.31
, Issue.4
, pp. 184-191
-
-
Kohda, M.1
Hoshiya, H.2
Katoh, M.3
Tanaka, I.4
Masuda, R.5
Takemura, T.6
-
200
-
-
0028905376
-
Frequent loss of imprinting of the H19 gene is often associated with its overexpression in human lung cancers
-
7700644
-
M Kondo H Suzuki R Ueda H Osada K Takagi T Takahashi 1995 Frequent loss of imprinting of the H19 gene is often associated with its overexpression in human lung cancers Oncogene 10 6 1193 1198 7700644
-
(1995)
Oncogene
, vol.10
, Issue.6
, pp. 1193-1198
-
-
Kondo, M.1
Suzuki, H.2
Ueda, R.3
Osada, H.4
Takagi, K.5
Takahashi, T.6
-
203
-
-
0023256838
-
Nonrandom loss of maternal chromosome 11 alleles in Wilms tumors
-
2883892
-
WT Schroeder LY Chao DD Dao LC Strong S Pathak V Riccardi, et al. 1987 Nonrandom loss of maternal chromosome 11 alleles in Wilms tumors American Journal of Human Genetics 40 5 413 420 2883892
-
(1987)
American Journal of Human Genetics
, vol.40
, Issue.5
, pp. 413-420
-
-
Schroeder, W.T.1
Chao, L.Y.2
Dao, D.D.3
Strong, L.C.4
Pathak, S.5
Riccardi, V.6
-
205
-
-
0242584449
-
Induction of tumors in mice by genomic hypomethylation
-
12702876
-
F Gaudet JG Hodgson A Eden L Jackson-Grusby J Dausman JW Gray, et al. 2003 Induction of tumors in mice by genomic hypomethylation Science 300 5618 489 492 12702876
-
(2003)
Science
, vol.300
, Issue.5618
, pp. 489-492
-
-
Gaudet, F.1
Hodgson, J.G.2
Eden, A.3
Jackson-Grusby, L.4
Dausman, J.5
Gray, J.W.6
-
206
-
-
0033385702
-
CpG methylation reduces genomic instability
-
10574701
-
R Rizwana PJ Hahn 1999 CpG methylation reduces genomic instability Journal of Cell Science 112 Pt 24 4513 4519 10574701
-
(1999)
Journal of Cell Science
, vol.112
, Issue.PART 24
, pp. 4513-4519
-
-
Rizwana, R.1
Hahn, P.J.2
-
207
-
-
58149399844
-
Hypomethylation of retrotransposable elements correlates with genomic instability in non-small cell lung cancer
-
A Daskalos G Nikolaidis G Xinarianos P Savvari A Cassidy R Zakopoulou, et al. 2009 Hypomethylation of retrotransposable elements correlates with genomic instability in non-small cell lung cancer International Journal of Cancer 124 1 81 87
-
(2009)
International Journal of Cancer
, vol.124
, Issue.1
, pp. 81-87
-
-
Daskalos, A.1
Nikolaidis, G.2
Xinarianos, G.3
Savvari, P.4
Cassidy, A.5
Zakopoulou, R.6
-
208
-
-
0031662164
-
Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
-
9771701
-
CP Walsh JR Chaillet TH Bestor 1998 Transcription of IAP endogenous retroviruses is constrained by cytosine methylation Nature Genetics 20 2 116 117 9771701
-
(1998)
Nature Genetics
, vol.20
, Issue.2
, pp. 116-117
-
-
Walsh, C.P.1
Chaillet, J.R.2
Bestor, T.H.3
-
209
-
-
9944233064
-
Distinctive pattern of LINE-1 methylation level in normal tissues and the association with carcinogenesis
-
15480421
-
K Chalitchagorn S Shuangshoti N Hourpai N Kongruttanachok P Tangkijvanich D Thong-ngam, et al. 2004 Distinctive pattern of LINE-1 methylation level in normal tissues and the association with carcinogenesis Oncogene 23 54 8841 8846 15480421
-
(2004)
Oncogene
, vol.23
, Issue.54
, pp. 8841-8846
-
-
Chalitchagorn, K.1
Shuangshoti, S.2
Hourpai, N.3
Kongruttanachok, N.4
Tangkijvanich, P.5
Thong-Ngam, D.6
-
210
-
-
38349135680
-
High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer
-
18162535
-
TA Rauch X Zhong X Wu M Wang KH Kernstine Z Wang, et al. 2008 High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer Proceedings of the National Academy of Sciences of the United States of America 105 1 252 257 18162535
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.1
, pp. 252-257
-
-
Rauch, T.A.1
Zhong, X.2
Wu, X.3
Wang, M.4
Kernstine, K.H.5
Wang, Z.6
-
211
-
-
0019827634
-
Chromatin structure of endogenous retroviral genes and activation by an inhibitor of DNA methylation
-
6166864
-
M Groudine R Eisenman H Weintraub 1981 Chromatin structure of endogenous retroviral genes and activation by an inhibitor of DNA methylation Nature 292 5821 311 317 6166864
-
(1981)
Nature
, vol.292
, Issue.5821
, pp. 311-317
-
-
Groudine, M.1
Eisenman, R.2
Weintraub, H.3
-
212
-
-
31144432001
-
Epigenomics: Mapping the methylome
-
16397413
-
IM Wilson JJ Davies M Weber CJ Brown CE Alvarez C MacAulay, et al. 2006 Epigenomics: mapping the methylome Cell Cycle 5 2 155 158 16397413
-
(2006)
Cell Cycle
, vol.5
, Issue.2
, pp. 155-158
-
-
Wilson, I.M.1
Davies, J.J.2
Weber, M.3
Brown, C.J.4
Alvarez, C.E.5
MacAulay, C.6
-
213
-
-
33749039999
-
Genome-wide hypomethylation in human glioblastomas associated with specific copy number alteration, methylenetetrahydrofolate reductase allele status, and increased proliferation
-
16951158
-
B Cadieux TT Ching SR VandenBerg JF Costello 2006 Genome-wide hypomethylation in human glioblastomas associated with specific copy number alteration, methylenetetrahydrofolate reductase allele status, and increased proliferation Cancer Research 66 17 8469 8476 16951158
-
(2006)
Cancer Research
, vol.66
, Issue.17
, pp. 8469-8476
-
-
Cadieux, B.1
Ching, T.T.2
Vandenberg, S.R.3
Costello, J.F.4
-
214
-
-
0037037787
-
Tumor suppressor genes on chromosome 3p involved in the pathogenesis of lung and other cancers
-
12362274
-
ER Zabarovsky MI Lerman JD Minna 2002 Tumor suppressor genes on chromosome 3p involved in the pathogenesis of lung and other cancers Oncogene 21 45 6915 6935 12362274
-
(2002)
Oncogene
, vol.21
, Issue.45
, pp. 6915-6935
-
-
Zabarovsky, E.R.1
Lerman, M.I.2
Minna, J.D.3
-
215
-
-
0037089460
-
Aberrant promoter methylation in bronchial epithelium and sputum from current and former smokers
-
11956099
-
SA Belinsky WA Palmisano FD Gilliland LA Crooks KK Divine SA Winters, et al. 2002 Aberrant promoter methylation in bronchial epithelium and sputum from current and former smokers Cancer Research 62 8 2370 2377 11956099
-
(2002)
Cancer Research
, vol.62
, Issue.8
, pp. 2370-2377
-
-
Belinsky, S.A.1
Palmisano, W.A.2
Gilliland, F.D.3
Crooks, L.A.4
Divine, K.K.5
Winters, S.A.6
-
216
-
-
0034326238
-
Predicting lung cancer by detecting aberrant promoter methylation in sputum
-
11085511
-
WA Palmisano KK Divine G Saccomanno FD Gilliland SB Baylin JG Herman, et al. 2000 Predicting lung cancer by detecting aberrant promoter methylation in sputum Cancer Research 60 21 5954 5958 11085511
-
(2000)
Cancer Research
, vol.60
, Issue.21
, pp. 5954-5958
-
-
Palmisano, W.A.1
Divine, K.K.2
Saccomanno, G.3
Gilliland, F.D.4
Baylin, S.B.5
Herman, J.G.6
-
217
-
-
4544250024
-
Gene-promoter hypermethylation as a biomarker in lung cancer
-
15343277
-
SA Belinsky 2004 Gene-promoter hypermethylation as a biomarker in lung cancer Nature Reviews Cancer 4 9 707 717 15343277
-
(2004)
Nature Reviews Cancer
, vol.4
, Issue.9
, pp. 707-717
-
-
Belinsky, S.A.1
-
218
-
-
40949141564
-
Promoter methylation of genes in and around the candidate lung cancer susceptibility locus 6q23-25
-
18339850
-
M Tessema R Willink K Do YY Yu W Yu EO Machida, et al. 2008 Promoter methylation of genes in and around the candidate lung cancer susceptibility locus 6q23-25 Cancer Research 68 6 1707 1714 18339850
-
(2008)
Cancer Research
, vol.68
, Issue.6
, pp. 1707-1714
-
-
Tessema, M.1
Willink, R.2
Do, K.3
Yu, Y.Y.4
Yu, W.5
MacHida, E.O.6
-
219
-
-
65549104157
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression
-
19295514
-
ND Heintzman GC Hon RD Hawkins P Kheradpour A Stark LF Harp, et al. 2009 Histone modifications at human enhancers reflect global cell-type-specific gene expression Nature 459 7243 108 112 19295514
-
(2009)
Nature
, vol.459
, Issue.7243
, pp. 108-112
-
-
Heintzman, N.D.1
Hon, G.C.2
Hawkins, R.D.3
Kheradpour, P.4
Stark, A.5
Harp, L.F.6
-
220
-
-
41649121741
-
Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells
-
18347325
-
VM Komashko LG Acevedo SL Squazzo SS Iyengar A Rabinovich H O'Geen, et al. 2008 Using ChIP-chip technology to reveal common principles of transcriptional repression in normal and cancer cells Genome Research 18 4 521 532 18347325
-
(2008)
Genome Research
, vol.18
, Issue.4
, pp. 521-532
-
-
Komashko, V.M.1
Acevedo, L.G.2
Squazzo, S.L.3
Iyengar, S.S.4
Rabinovich, A.5
O'Geen, H.6
-
221
-
-
61849178049
-
Genome-wide profiling of histone h3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis
-
19262738
-
XS Ke Y Qu K Rostad WC Li B Lin OJ Halvorsen, et al. 2009 Genome-wide profiling of histone h3 lysine 4 and lysine 27 trimethylation reveals an epigenetic signature in prostate carcinogenesis PLoS ONE 4 3 e4687 19262738
-
(2009)
PLoS ONE
, vol.4
, Issue.3
, pp. 4687
-
-
Ke, X.S.1
Qu, Y.2
Rostad, K.3
Li, W.C.4
Lin, B.5
Halvorsen, O.J.6
-
222
-
-
44349131472
-
Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation
-
18488029
-
Y Kondo L Shen AS Cheng S Ahmed Y Boumber C Charo, et al. 2008 Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation Nature Genetics 40 6 741 750 18488029
-
(2008)
Nature Genetics
, vol.40
, Issue.6
, pp. 741-750
-
-
Kondo, Y.1
Shen, L.2
Cheng, A.S.3
Ahmed, S.4
Boumber, Y.5
Charo, C.6
-
223
-
-
36349017912
-
A polycomb repression signature in metastatic prostate cancer predicts cancer outcome
-
18006806
-
J Yu DR Rhodes SA Tomlins X Cao G Chen R Mehra, et al. 2007 A polycomb repression signature in metastatic prostate cancer predicts cancer outcome Cancer Research 67 22 10657 10663 18006806
-
(2007)
Cancer Research
, vol.67
, Issue.22
, pp. 10657-10663
-
-
Yu, J.1
Rhodes, D.R.2
Tomlins, S.A.3
Cao, X.4
Chen, G.5
Mehra, R.6
-
224
-
-
34250014379
-
Diverse histone modifications on histone 3 lysine 9 and their relation to DNA methylation in specifying gene silencing
-
17524140
-
J Wu SH Wang D Potter JC Liu LT Smith YZ Wu, et al. 2007 Diverse histone modifications on histone 3 lysine 9 and their relation to DNA methylation in specifying gene silencing BMC Genomics 8 131 17524140
-
(2007)
BMC Genomics
, vol.8
, pp. 131
-
-
Wu, J.1
Wang, S.H.2
Potter, D.3
Liu, J.C.4
Smith, L.T.5
Wu, Y.Z.6
-
225
-
-
54549083228
-
H3K79 methylation profiles define murine and human MLL-AF4 leukemias
-
18977325
-
AV Krivtsov Z Feng ME Lemieux J Faber S Vempati AU Sinha, et al. 2008 H3K79 methylation profiles define murine and human MLL-AF4 leukemias Cancer Cell 14 5 355 368 18977325
-
(2008)
Cancer Cell
, vol.14
, Issue.5
, pp. 355-368
-
-
Krivtsov, A.V.1
Feng, Z.2
Lemieux, M.E.3
Faber, J.4
Vempati, S.5
Sinha, A.U.6
-
226
-
-
68749084845
-
Integrated expression profiling and ChIP-seq analyses of the growth inhibition response program of the androgen receptor
-
19668381
-
B Lin J Wang X Hong X Yan D Hwang JH Cho, et al. 2009 Integrated expression profiling and ChIP-seq analyses of the growth inhibition response program of the androgen receptor PLoS ONE 4 8 e6589 19668381
-
(2009)
PLoS ONE
, vol.4
, Issue.8
, pp. 6589
-
-
Lin, B.1
Wang, J.2
Hong, X.3
Yan, X.4
Hwang, D.5
Cho, J.H.6
-
227
-
-
70449103609
-
An oestrogen-receptor-alpha-bound human chromatin interactome
-
19890323
-
MJ Fullwood MH Liu YF Pan J Liu H Xu YB Mohamed, et al. 2009 An oestrogen-receptor-alpha-bound human chromatin interactome Nature 462 7269 58 64 19890323
-
(2009)
Nature
, vol.462
, Issue.7269
, pp. 58-64
-
-
Fullwood, M.J.1
Liu, M.H.2
Pan, Y.F.3
Liu, J.4
Xu, H.5
Mohamed, Y.B.6
-
229
-
-
0242667828
-
Analysing differential gene expression in cancer
-
14668817
-
P Liang AB Pardee 2003 Analysing differential gene expression in cancer Nature Reviews Cancer 3 11 869 876 14668817
-
(2003)
Nature Reviews Cancer
, vol.3
, Issue.11
, pp. 869-876
-
-
Liang, P.1
Pardee, A.B.2
-
230
-
-
34447555782
-
Mining gene expression profiles: Expression signatures as cancer phenotypes
-
17607306
-
JR Nevins A Potti 2007 Mining gene expression profiles: Expression signatures as cancer phenotypes Nature Reviews Genetics 8 8 601 609 17607306
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.8
, pp. 601-609
-
-
Nevins, J.R.1
Potti, A.2
-
231
-
-
13844250828
-
Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
-
12297621
-
JR Pollack T Sorlie CM Perou CA Rees SS Jeffrey PE Lonning, et al. 2002 Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors Proceedings of the National Academy of Sciences of the United States of America 99 20 12963 12968 12297621
-
(2002)
Proceedings of the National Academy of Sciences of the United States of America
, vol.99
, Issue.20
, pp. 12963-12968
-
-
Pollack, J.R.1
Sorlie, T.2
Perou, C.M.3
Rees, C.A.4
Jeffrey, S.S.5
Lonning, P.E.6
-
232
-
-
14944343419
-
Microarray analyses reveal strong influence of DNA copy number alterations on the transcriptional patterns in pancreatic cancer: Implications for the interpretation of genomic amplifications
-
15688027
-
M Heidenblad D Lindgren JA Veltman T Jonson EH Mahlamaki L Gorunova, et al. 2005 Microarray analyses reveal strong influence of DNA copy number alterations on the transcriptional patterns in pancreatic cancer: implications for the interpretation of genomic amplifications Oncogene 24 10 1794 1801 15688027
-
(2005)
Oncogene
, vol.24
, Issue.10
, pp. 1794-1801
-
-
Heidenblad, M.1
Lindgren, D.2
Veltman, J.A.3
Jonson, T.4
Mahlamaki, E.H.5
Gorunova, L.6
-
233
-
-
0036829790
-
Impact of DNA amplification on gene expression patterns in breast cancer
-
12414653
-
E Hyman P Kauraniemi S Hautaniemi M Wolf S Mousses E Rozenblum, et al. 2002 Impact of DNA amplification on gene expression patterns in breast cancer Cancer Research 62 21 6240 6245 12414653
-
(2002)
Cancer Research
, vol.62
, Issue.21
, pp. 6240-6245
-
-
Hyman, E.1
Kauraniemi, P.2
Hautaniemi, S.3
Wolf, M.4
Mousses, S.5
Rozenblum, E.6
-
234
-
-
2442637585
-
High-resolution analysis of gene copy number alterations in human prostate cancer using CGH on cDNA microarrays: Impact of copy number on gene expression
-
15153336
-
M Wolf S Mousses S Hautaniemi R Karhu P Huusko M Allinen, et al. 2004 High-resolution analysis of gene copy number alterations in human prostate cancer using CGH on cDNA microarrays: Impact of copy number on gene expression Neoplasia 6 3 240 247 15153336
-
(2004)
Neoplasia
, vol.6
, Issue.3
, pp. 240-247
-
-
Wolf, M.1
Mousses, S.2
Hautaniemi, S.3
Karhu, R.4
Huusko, P.5
Allinen, M.6
-
235
-
-
37549006702
-
Integrated profiling of basal and luminal breast cancers
-
18089785
-
J Adelaide P Finetti I Bekhouche L Repellini J Geneix F Sircoulomb, et al. 2007 Integrated profiling of basal and luminal breast cancers Cancer Research 67 24 11565 11575 18089785
-
(2007)
Cancer Research
, vol.67
, Issue.24
, pp. 11565-11575
-
-
Adelaide, J.1
Finetti, P.2
Bekhouche, I.3
Repellini, L.4
Geneix, J.5
Sircoulomb, F.6
-
236
-
-
59149096811
-
Prediction of clinical outcome in multiple lung cancer cohorts by integrative genomics: Implications for chemotherapy selection
-
19176396
-
P Broet S Camilleri-Broet S Zhang M Alifano D Bangarusamy M Battistella, et al. 2009 Prediction of clinical outcome in multiple lung cancer cohorts by integrative genomics: Implications for chemotherapy selection Cancer Research 69 3 1055 1062 19176396
-
(2009)
Cancer Research
, vol.69
, Issue.3
, pp. 1055-1062
-
-
Broet, P.1
Camilleri-Broet, S.2
Zhang, S.3
Alifano, M.4
Bangarusamy, D.5
Battistella, M.6
-
237
-
-
33845191779
-
Genomic and transcriptional aberrations linked to breast cancer pathophysiologies
-
17157792
-
K Chin S DeVries J Fridlyand PT Spellman R Roydasgupta WL Kuo, et al. 2006 Genomic and transcriptional aberrations linked to breast cancer pathophysiologies Cancer Cell 10 6 529 541 17157792
-
(2006)
Cancer Cell
, vol.10
, Issue.6
, pp. 529-541
-
-
Chin, K.1
Devries, S.2
Fridlyand, J.3
Spellman, P.T.4
Roydasgupta, R.5
Kuo, W.L.6
-
238
-
-
77953120975
-
An integrative genomic and transcriptomic analysis reveals molecular pathways and networks regulated by copy number aberrations in basal-like, HER2 and luminal cancers
-
doi: s00280-009-1073-y/s10549-009-0501-3
-
Natrajan, R., Weigelt, B., Mackay, A., Geyer, F. C., Grigoriadis, A., Tan, D. S., et al. (2009). An integrative genomic and transcriptomic analysis reveals molecular pathways and networks regulated by copy number aberrations in basal-like, HER2 and luminal cancers. Breast Cancer Research and Treatment. doi: s00280-009-1073-y/s10549-009-0501-3.
-
(2009)
Breast Cancer Research and Treatment
-
-
Natrajan, R.1
Weigelt, B.2
MacKay, A.3
Geyer, F.C.4
Grigoriadis, A.5
Tan, D.S.6
-
240
-
-
65949104847
-
Analysis of DNA copy number alterations in ovarian serous tumors identifies new molecular genetic changes in low-grade and high-grade carcinomas
-
19383911
-
KT Kuo B Guan Y Feng TL Mao X Chen N Jinawath, et al. 2009 Analysis of DNA copy number alterations in ovarian serous tumors identifies new molecular genetic changes in low-grade and high-grade carcinomas Cancer Research 69 9 4036 4042 19383911
-
(2009)
Cancer Research
, vol.69
, Issue.9
, pp. 4036-4042
-
-
Kuo, K.T.1
Guan, B.2
Feng, Y.3
Mao, T.L.4
Chen, X.5
Jinawath, N.6
-
241
-
-
65349160295
-
Integrative high-resolution microarray analysis of human myeloma cell lines reveals deregulated miRNA expression associated with allelic imbalances and gene expression profiles
-
19306352
-
M Lionetti L Agnelli L Mosca S Fabris A Andronache K Todoerti, et al. 2009 Integrative high-resolution microarray analysis of human myeloma cell lines reveals deregulated miRNA expression associated with allelic imbalances and gene expression profiles Genes, Chromosomes, and Cancer 48 6 521 531 19306352
-
(2009)
Genes, Chromosomes, and Cancer
, vol.48
, Issue.6
, pp. 521-531
-
-
Lionetti, M.1
Agnelli, L.2
Mosca, L.3
Fabris, S.4
Andronache, A.5
Todoerti, K.6
-
243
-
-
44349124725
-
Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer
-
18458333
-
L Zhang S Volinia T Bonome GA Calin J Greshock N Yang, et al. 2008 Genomic and epigenetic alterations deregulate microRNA expression in human epithelial ovarian cancer Proceedings of the National Academy of Sciences of the United States of America 105 19 7004 7009 18458333
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.19
, pp. 7004-7009
-
-
Zhang, L.1
Volinia, S.2
Bonome, T.3
Calin, G.A.4
Greshock, J.5
Yang, N.6
-
244
-
-
33750370444
-
MicroRNA signatures in human cancers
-
17060945
-
GA Calin CM Croce 2006 MicroRNA signatures in human cancers Nature Reviews Cancer 6 11 857 866 17060945
-
(2006)
Nature Reviews Cancer
, vol.6
, Issue.11
, pp. 857-866
-
-
Calin, G.A.1
Croce, C.M.2
-
246
-
-
0043165092
-
Analysis of microsatellite instability and X-inactivation in ovarian borderline tumors lacking numerical abnormalities by comparative genomic hybridization
-
12935925
-
NG Wolf C Farver FW Abdul-Karim S Schwartz 2003 Analysis of microsatellite instability and X-inactivation in ovarian borderline tumors lacking numerical abnormalities by comparative genomic hybridization Cancer Genetics and Cytogenetics 145 2 133 138 12935925
-
(2003)
Cancer Genetics and Cytogenetics
, vol.145
, Issue.2
, pp. 133-138
-
-
Wolf, N.G.1
Farver, C.2
Abdul-Karim, F.W.3
Schwartz, S.4
-
247
-
-
70349145414
-
MicroRNA dynamics in the stages of tumorigenesis correlate with hallmark capabilities of cancer
-
19759263
-
P Olson J Lu H Zhang A Shai MG Chun Y Wang, et al. 2009 MicroRNA dynamics in the stages of tumorigenesis correlate with hallmark capabilities of cancer Genes and Development 23 18 2152 2165 19759263
-
(2009)
Genes and Development
, vol.23
, Issue.18
, pp. 2152-2165
-
-
Olson, P.1
Lu, J.2
Zhang, H.3
Shai, A.4
Chun, M.G.5
Wang, Y.6
-
249
-
-
59449097723
-
How epigenetics can explain human metastasis: A new role for microRNAs
-
19177007
-
A Lujambio M Esteller 2009 How epigenetics can explain human metastasis: A new role for microRNAs Cell Cycle 8 3 377 382 19177007
-
(2009)
Cell Cycle
, vol.8
, Issue.3
, pp. 377-382
-
-
Lujambio, A.1
Esteller, M.2
-
250
-
-
34548746977
-
MicroRNA signatures in human ovarian cancer
-
17875710
-
MV Iorio R Visone G Di Leva V Donati F Petrocca P Casalini, et al. 2007 MicroRNA signatures in human ovarian cancer Cancer Research 67 18 8699 8707 17875710
-
(2007)
Cancer Research
, vol.67
, Issue.18
, pp. 8699-8707
-
-
Iorio, M.V.1
Visone, R.2
Di Leva, G.3
Donati, V.4
Petrocca, F.5
Casalini, P.6
-
251
-
-
38349191617
-
CpG island hypermethylation of tumor suppressor microRNAs in human cancer
-
17581274
-
A Lujambio M Esteller 2007 CpG island hypermethylation of tumor suppressor microRNAs in human cancer Cell Cycle 6 12 1455 1459 17581274
-
(2007)
Cell Cycle
, vol.6
, Issue.12
, pp. 1455-1459
-
-
Lujambio, A.1
Esteller, M.2
-
252
-
-
33847763576
-
Genetic unmasking of an epigenetically silenced microRNA in human cancer cells
-
17308079
-
A Lujambio S Ropero E Ballestar MF Fraga C Cerrato F Setien, et al. 2007 Genetic unmasking of an epigenetically silenced microRNA in human cancer cells Cancer Research 67 4 1424 1429 17308079
-
(2007)
Cancer Research
, vol.67
, Issue.4
, pp. 1424-1429
-
-
Lujambio, A.1
Ropero, S.2
Ballestar, E.3
Fraga, M.F.4
Cerrato, C.5
Setien, F.6
-
254
-
-
65549107328
-
Identification of interactive networks of gene expression associated with osteosarcoma oncogenesis by integrated molecular profiling
-
19286668
-
B Sadikovic M Yoshimoto S Chilton-MacNeill P Thorner JA Squire M Zielenska 2009 Identification of interactive networks of gene expression associated with osteosarcoma oncogenesis by integrated molecular profiling Human Molecular Genetics 18 11 1962 1975 19286668
-
(2009)
Human Molecular Genetics
, vol.18
, Issue.11
, pp. 1962-1975
-
-
Sadikovic, B.1
Yoshimoto, M.2
Chilton-Macneill, S.3
Thorner, P.4
Squire, J.A.5
Zielenska, M.6
-
255
-
-
24944517170
-
Oncogene amplification in the proximal part of chromosome 6 in rat endometrial adenocarcinoma as revealed by combined BAC/PAC FISH, chromosome painting, zoo-FISH, and allelotyping
-
15942940
-
T Adamovic F Trosso L Roshani L Andersson G Petersen S Rajaei, et al. 2005 Oncogene amplification in the proximal part of chromosome 6 in rat endometrial adenocarcinoma as revealed by combined BAC/PAC FISH, chromosome painting, zoo-FISH, and allelotyping Genes, Chromosomes, and Cancer 44 2 139 153 15942940
-
(2005)
Genes, Chromosomes, and Cancer
, vol.44
, Issue.2
, pp. 139-153
-
-
Adamovic, T.1
Trosso, F.2
Roshani, L.3
Andersson, L.4
Petersen, G.5
Rajaei, S.6
-
256
-
-
77649191945
-
Expression of nucleoside transporters, deoxycitidine kinase, ribonucleotide reductase regulatory subunits, and gemcitabine catabolic enzymes in primary ovarian cancer
-
doi:s00280-009-1073-y/s00280-009-1073-y
-
Ferrandina, G., Mey, V., Nannizzi, S., Ricciardi, S., Petrillo, M., Ferlini, C., et al. (2009). Expression of nucleoside transporters, deoxycitidine kinase, ribonucleotide reductase regulatory subunits, and gemcitabine catabolic enzymes in primary ovarian cancer. Cancer Chemotherapy and Pharmacology. doi: s00280-009-1073-y/s00280-009-1073-y.
-
(2009)
Cancer Chemotherapy and Pharmacology
-
-
Ferrandina, G.1
Mey, V.2
Nannizzi, S.3
Ricciardi, S.4
Petrillo, M.5
Ferlini, C.6
-
257
-
-
52249109610
-
Identification of biomarkers of adrenocortical carcinoma using genomewide gene expression profiling
-
18794420 discussion 846
-
GG Fernandez-Ranvier J Weng RF Yeh E Khanafshar I Suh C Barker, et al. 2008 Identification of biomarkers of adrenocortical carcinoma using genomewide gene expression profiling Archives of Surgery 143 9 841 846 18794420 discussion 846
-
(2008)
Archives of Surgery
, vol.143
, Issue.9
, pp. 841-846
-
-
Fernandez-Ranvier, G.G.1
Weng, J.2
Yeh, R.F.3
Khanafshar, E.4
Suh, I.5
Barker, C.6
-
258
-
-
57049162405
-
Putative direct and indirect Wnt targets identified through consistent gene expression changes in APC-mutant intestinal adenomas from humans and mice
-
18782851
-
S Segditsas O Sieber M Deheragoda P East A Rowan R Jeffery, et al. 2008 Putative direct and indirect Wnt targets identified through consistent gene expression changes in APC-mutant intestinal adenomas from humans and mice Human Molecular Genetics 17 24 3864 3875 18782851
-
(2008)
Human Molecular Genetics
, vol.17
, Issue.24
, pp. 3864-3875
-
-
Segditsas, S.1
Sieber, O.2
Deheragoda, M.3
East, P.4
Rowan, A.5
Jeffery, R.6
-
259
-
-
70450268120
-
MUC1 oncoprotein is a druggable target in human prostate cancer cells
-
19887552
-
MD Joshi R Ahmad L Yin D Raina H Rajabi G Bubley, et al. 2009 MUC1 oncoprotein is a druggable target in human prostate cancer cells Molecular Cancer Therapeutics 8 11 3056 3065 19887552
-
(2009)
Molecular Cancer Therapeutics
, vol.8
, Issue.11
, pp. 3056-3065
-
-
Joshi, M.D.1
Ahmad, R.2
Yin, L.3
Raina, D.4
Rajabi, H.5
Bubley, G.6
-
260
-
-
66149151809
-
MUC1-induced transcriptional programs associated with tumorigenesis predict outcome in breast and lung cancer
-
19318547
-
NN Khodarev SP Pitroda MA Beckett DM MacDermed L Huang DW Kufe, et al. 2009 MUC1-induced transcriptional programs associated with tumorigenesis predict outcome in breast and lung cancer Cancer Research 69 7 2833 2837 19318547
-
(2009)
Cancer Research
, vol.69
, Issue.7
, pp. 2833-2837
-
-
Khodarev, N.N.1
Pitroda, S.P.2
Beckett, M.A.3
MacDermed, D.M.4
Huang, L.5
Kufe, D.W.6
-
262
-
-
65649086486
-
Defining genomic alteration boundaries for a combined small cell and non-small cell lung carcinoma
-
19179901
-
TP Buys S Aviel-Ronen TK Waddell WL Lam MS Tsao 2009 Defining genomic alteration boundaries for a combined small cell and non-small cell lung carcinoma Journal of Thoracic Oncology 4 2 227 239 19179901
-
(2009)
Journal of Thoracic Oncology
, vol.4
, Issue.2
, pp. 227-239
-
-
Buys, T.P.1
Aviel-Ronen, S.2
Waddell, T.K.3
Lam, W.L.4
Tsao, M.S.5
-
263
-
-
47649128110
-
Tiling array-CGH for the assessment of genomic similarities among synchronous unilateral and bilateral invasive breast cancer tumor pairs
-
18616792
-
S Brommesson G Jonsson C Strand D Grabau P Malmstrom M Ringner, et al. 2008 Tiling array-CGH for the assessment of genomic similarities among synchronous unilateral and bilateral invasive breast cancer tumor pairs BMC Clinical Pathology 8 6 18616792
-
(2008)
BMC Clinical Pathology
, vol.8
, pp. 6
-
-
Brommesson, S.1
Jonsson, G.2
Strand, C.3
Grabau, D.4
Malmstrom, P.5
Ringner, M.6
-
264
-
-
34447343152
-
Genetic analysis of multifocal superficial urothelial cancers by array-based comparative genomic hybridisation
-
17579624
-
H Kawanishi T Takahashi M Ito Y Matsui J Watanabe N Ito, et al. 2007 Genetic analysis of multifocal superficial urothelial cancers by array-based comparative genomic hybridisation British Journal of Cancer 97 2 260 266 17579624
-
(2007)
British Journal of Cancer
, vol.97
, Issue.2
, pp. 260-266
-
-
Kawanishi, H.1
Takahashi, T.2
Ito, M.3
Matsui, Y.4
Watanabe, J.5
Ito, N.6
-
265
-
-
52649089087
-
The use of array-based comparative genomic hybridization (a-CGH) to distinguish metastatic from primary synchronous carcinomas of the ovary and the uterus
-
18643851
-
P Mhawech-Fauceglia H Rai N Nowak RT Cheney K Rodabaugh S Lele, et al. 2008 The use of array-based comparative genomic hybridization (a-CGH) to distinguish metastatic from primary synchronous carcinomas of the ovary and the uterus Histopathology 53 4 490 495 18643851
-
(2008)
Histopathology
, vol.53
, Issue.4
, pp. 490-495
-
-
Mhawech-Fauceglia, P.1
Rai, H.2
Nowak, N.3
Cheney, R.T.4
Rodabaugh, K.5
Lele, S.6
-
266
-
-
37349075254
-
Different epidermal growth factor receptor gene mutations in a patient with 2 synchronous lung cancers
-
H Nakano H Soda Y Nakamura K Uchida M Takasu K Nakatomi, et al. 2007 Different epidermal growth factor receptor gene mutations in a patient with 2 synchronous lung cancers Clinical Lung Cancer 8 9 562 564 18186961 (Pubitemid 350292230)
-
(2007)
Clinical Lung Cancer
, vol.8
, Issue.9
, pp. 562-564
-
-
Nakano, H.1
Soda, H.2
Nakamura, Y.3
Uchida, K.4
Takasu, M.5
Nakatomi, K.6
Izumikawa, K.7
Hayashi, T.8
Nagayasu, T.9
Tsukamoto, K.10
Kohno, S.11
-
267
-
-
33745593694
-
Synchronous multiple primary lung cancers with different response to gefitinib
-
16787685
-
BY Ryoo II Na SH Yang JS Koh CH Kim JC Lee 2006 Synchronous multiple primary lung cancers with different response to gefitinib Lung Cancer 53 2 245 248 16787685
-
(2006)
Lung Cancer
, vol.53
, Issue.2
, pp. 245-248
-
-
Ryoo, B.Y.1
Na, I.I.2
Yang, S.H.3
Koh, J.S.4
Kim, C.H.5
Lee, J.C.6
-
268
-
-
49749110108
-
Molecular evidence for a clonal relationship between multiple lesions in patients with unknown primary adenocarcinoma
-
EJ Speel AJ van de Wouw SM Claessen A Haesevoets AH Hopman AA van der Wurff, et al. 2008 Molecular evidence for a clonal relationship between multiple lesions in patients with unknown primary adenocarcinoma International Journal of Cancer 123 6 1292 1300
-
(2008)
International Journal of Cancer
, vol.123
, Issue.6
, pp. 1292-1300
-
-
Speel, E.J.1
Van De Wouw, A.J.2
Claessen, S.M.3
Haesevoets, A.4
Hopman, A.H.5
Van Der Wurff, A.A.6
-
269
-
-
16444380716
-
Clinical application of array-based comparative genomic hybridization to define the relationship between multiple synchronous tumors
-
15696129
-
CV Wa S DeVries YY Chen FM Waldman ES Hwang 2005 Clinical application of array-based comparative genomic hybridization to define the relationship between multiple synchronous tumors Modern Pathology 18 4 591 597 15696129
-
(2005)
Modern Pathology
, vol.18
, Issue.4
, pp. 591-597
-
-
Wa, C.V.1
Devries, S.2
Chen, Y.Y.3
Waldman, F.M.4
Hwang, E.S.5
-
270
-
-
0043264333
-
Molecular cytogenetic investigations of synchronous bilateral breast cancer
-
12944548
-
K Agelopoulos N Tidow E Korsching R Voss B Hinrichs B Brandt, et al. 2003 Molecular cytogenetic investigations of synchronous bilateral breast cancer Journal of Clinical Pathology 56 9 660 665 12944548
-
(2003)
Journal of Clinical Pathology
, vol.56
, Issue.9
, pp. 660-665
-
-
Agelopoulos, K.1
Tidow, N.2
Korsching, E.3
Voss, R.4
Hinrichs, B.5
Brandt, B.6
-
271
-
-
34147198467
-
Synthetic lethal screen identification of chemosensitizer loci in cancer cells
-
17429401
-
AW Whitehurst BO Bodemann J Cardenas D Ferguson L Girard M Peyton, et al. 2007 Synthetic lethal screen identification of chemosensitizer loci in cancer cells Nature 446 7137 815 819 17429401
-
(2007)
Nature
, vol.446
, Issue.7137
, pp. 815-819
-
-
Whitehurst, A.W.1
Bodemann, B.O.2
Cardenas, J.3
Ferguson, D.4
Girard, L.5
Peyton, M.6
-
272
-
-
70449091786
-
Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1
-
19847166
-
DA Barbie P Tamayo JS Boehm SY Kim SE Moody IF Dunn, et al. 2009 Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1 Nature 462 7269 108 112 19847166
-
(2009)
Nature
, vol.462
, Issue.7269
, pp. 108-112
-
-
Barbie, D.A.1
Tamayo, P.2
Boehm, J.S.3
Kim, S.Y.4
Moody, S.E.5
Dunn, I.F.6
-
273
-
-
12144289681
-
A large-scale RNAi screen in human cells identifies new components of the p53 pathway
-
15042092
-
K Berns EM Hijmans J Mullenders TR Brummelkamp A Velds M Heimerikx, et al. 2004 A large-scale RNAi screen in human cells identifies new components of the p53 pathway Nature 428 6981 431 437 15042092
-
(2004)
Nature
, vol.428
, Issue.6981
, pp. 431-437
-
-
Berns, K.1
Hijmans, E.M.2
Mullenders, J.3
Brummelkamp, T.R.4
Velds, A.5
Heimerikx, M.6
-
274
-
-
55749101028
-
A genome-wide shRNA screen identifies GAS1 as a novel melanoma metastasis suppressor gene
-
18981472
-
S Gobeil X Zhu CJ Doillon MR Green 2008 A genome-wide shRNA screen identifies GAS1 as a novel melanoma metastasis suppressor gene Genes and Development 22 21 2932 2940 18981472
-
(2008)
Genes and Development
, vol.22
, Issue.21
, pp. 2932-2940
-
-
Gobeil, S.1
Zhu, X.2
Doillon, C.J.3
Green, M.R.4
-
275
-
-
58149521944
-
Highly parallel identification of essential genes in cancer cells
-
19091943
-
B Luo HW Cheung A Subramanian T Sharifnia M Okamoto X Yang, et al. 2008 Highly parallel identification of essential genes in cancer cells Proceedings of the National Academy of Sciences of the United States of America 105 51 20380 20385 19091943
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.51
, pp. 20380-20385
-
-
Luo, B.1
Cheung, H.W.2
Subramanian, A.3
Sharifnia, T.4
Okamoto, M.5
Yang, X.6
-
276
-
-
66149091940
-
A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene
-
19490893
-
J Luo MJ Emanuele D Li CJ Creighton MR Schlabach TF Westbrook, et al. 2009 A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene Cell 137 5 835 848 19490893
-
(2009)
Cell
, vol.137
, Issue.5
, pp. 835-848
-
-
Luo, J.1
Emanuele, M.J.2
Li, D.3
Creighton, C.J.4
Schlabach, M.R.5
Westbrook, T.F.6
-
277
-
-
33646033137
-
A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen
-
16564017
-
J Moffat DA Grueneberg X Yang SY Kim AM Kloepfer G Hinkle, et al. 2006 A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen Cell 124 6 1283 1298 16564017
-
(2006)
Cell
, vol.124
, Issue.6
, pp. 1283-1298
-
-
Moffat, J.1
Grueneberg, D.A.2
Yang, X.3
Kim, S.Y.4
Kloepfer, A.M.5
Hinkle, G.6
-
278
-
-
65849111219
-
Synthetic lethal interaction between oncogenic KRAS dependency and STK33 suppression in human cancer cells
-
19490892
-
C Scholl S Frohling IF Dunn AC Schinzel DA Barbie SY Kim, et al. 2009 Synthetic lethal interaction between oncogenic KRAS dependency and STK33 suppression in human cancer cells Cell 137 5 821 834 19490892
-
(2009)
Cell
, vol.137
, Issue.5
, pp. 821-834
-
-
Scholl, C.1
Frohling, S.2
Dunn, I.F.3
Schinzel, A.C.4
Barbie, D.A.5
Kim, S.Y.6
-
279
-
-
38849192515
-
Profiling essential genes in human mammary cells by multiplex RNAi screening
-
18239125
-
JM Silva K Marran JS Parker J Silva M Golding MR Schlabach, et al. 2008 Profiling essential genes in human mammary cells by multiplex RNAi screening Science 319 5863 617 620 18239125
-
(2008)
Science
, vol.319
, Issue.5863
, pp. 617-620
-
-
Silva, J.M.1
Marran, K.2
Parker, J.S.3
Silva, J.4
Golding, M.5
Schlabach, M.R.6
-
280
-
-
70349515367
-
Approaching clinical proteomics: Current state and future fields of application in cellular proteomics
-
19739086
-
R Apweiler C Aslanidis T Deufel A Gerstner J Hansen D Hochstrasser, et al. 2009 Approaching clinical proteomics: current state and future fields of application in cellular proteomics Cytometry A 75 10 816 832 19739086
-
(2009)
Cytometry A
, vol.75
, Issue.10
, pp. 816-832
-
-
Apweiler, R.1
Aslanidis, C.2
Deufel, T.3
Gerstner, A.4
Hansen, J.5
Hochstrasser, D.6
-
281
-
-
67650602912
-
Approaching clinical proteomics: Current state and future fields of application in fluid proteomics
-
19527139
-
R Apweiler C Aslanidis T Deufel A Gerstner J Hansen D Hochstrasser, et al. 2009 Approaching clinical proteomics: Current state and future fields of application in fluid proteomics Clinical Chemistry and Laboratory Medicine 47 6 724 744 19527139
-
(2009)
Clinical Chemistry and Laboratory Medicine
, vol.47
, Issue.6
, pp. 724-744
-
-
Apweiler, R.1
Aslanidis, C.2
Deufel, T.3
Gerstner, A.4
Hansen, J.5
Hochstrasser, D.6
-
282
-
-
70350435889
-
Current advances in tumor proteomics and candidate biomarkers for hepatic cancer
-
19811076
-
XQ Peng F Wang X Geng WM Zhang 2009 Current advances in tumor proteomics and candidate biomarkers for hepatic cancer Expert Review of Proteomics 6 5 551 561 19811076
-
(2009)
Expert Review of Proteomics
, vol.6
, Issue.5
, pp. 551-561
-
-
Peng, X.Q.1
Wang, F.2
Geng, X.3
Zhang, W.M.4
-
283
-
-
70349189541
-
Genomic and proteomic biomarkers for cancer: A multitude of opportunities
-
19406210
-
MA Tainsky 2009 Genomic and proteomic biomarkers for cancer: A multitude of opportunities Biochimica et Biophysica Acta 1796 2 176 193 19406210
-
(2009)
Biochimica et Biophysica Acta
, vol.1796
, Issue.2
, pp. 176-193
-
-
Tainsky, M.A.1
-
284
-
-
77349113840
-
Proteomic analysis of lymphoid and haematopoietic neoplasms: There's more than biomarker discovery
-
Zamo, A., & Cecconi, D. (2009). Proteomic analysis of lymphoid and haematopoietic neoplasms: There's more than biomarker discovery. J Proteomics.
-
(2009)
J Proteomics
-
-
Zamo, A.1
Cecconi, D.2
-
285
-
-
33846981150
-
A metabolomics perspective of human brain tumours
-
17298437
-
JL Griffin RA Kauppinen 2007 A metabolomics perspective of human brain tumours FEBS Journal 274 5 1132 1139 17298437
-
(2007)
FEBS Journal
, vol.274
, Issue.5
, pp. 1132-1139
-
-
Griffin, J.L.1
Kauppinen, R.A.2
-
287
-
-
60149091657
-
Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression
-
19212411
-
A Sreekumar LM Poisson TM Rajendiran AP Khan Q Cao J Yu, et al. 2009 Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression Nature 457 7231 910 914 19212411
-
(2009)
Nature
, vol.457
, Issue.7231
, pp. 910-914
-
-
Sreekumar, A.1
Poisson, L.M.2
Rajendiran, T.M.3
Khan, A.P.4
Cao, Q.5
Yu, J.6
|