-
1
-
-
0001093239
-
Van der Waals surfaces in molecular modeling: Implementation with real-time computer graphics
-
Bash P.A., et al. Van der Waals surfaces in molecular modeling: Implementation with real-time computer graphics. Science 222 4630 (1983) 1325-1327
-
(1983)
Science
, vol.222
, Issue.4630
, pp. 1325-1327
-
-
Bash, P.A.1
-
2
-
-
0015222647
-
The interpretation of protein structures: Estimation of static accessibility
-
Lee B., and Richards F. The interpretation of protein structures: Estimation of static accessibility. Journal of Molecular Biology 55 3 (1971) 379-400
-
(1971)
Journal of Molecular Biology
, vol.55
, Issue.3
, pp. 379-400
-
-
Lee, B.1
Richards, F.2
-
3
-
-
0032398742
-
Van der Waals surface graphs and molecular shape
-
Whitley D.C. Van der Waals surface graphs and molecular shape. Journal of Mathematical Chemistry 23 3-4 (1998) 377-397
-
(1998)
Journal of Mathematical Chemistry
, vol.23
, Issue.3-4
, pp. 377-397
-
-
Whitley, D.C.1
-
6
-
-
33751158393
-
Van-Der-Waals surface-areas and volumes of fullerenes
-
Adams G.B., Okeefe M., and Ruoff R.S. Van-Der-Waals surface-areas and volumes of fullerenes. Journal of Physical Chemistry 98 38 (1994) 9465-9469
-
(1994)
Journal of Physical Chemistry
, vol.98
, Issue.38
, pp. 9465-9469
-
-
Adams, G.B.1
Okeefe, M.2
Ruoff, R.S.3
-
7
-
-
0011930746
-
Theory of hydrophobic bonding. II. Correlation of hydrocarbon solubility in water with solvent cavity surface area
-
Hermann R.B. Theory of hydrophobic bonding. II. Correlation of hydrocarbon solubility in water with solvent cavity surface area. The Journal of Physical Chemistry 76 19 (1972) 2754-2759
-
(1972)
The Journal of Physical Chemistry
, vol.76
, Issue.19
, pp. 2754-2759
-
-
Hermann, R.B.1
-
8
-
-
0021107965
-
Solvent-accessible surfaces of proteins and nucleic-acids
-
Connolly M.L. Solvent-accessible surfaces of proteins and nucleic-acids. Science 221 4612 (1983) 709-713
-
(1983)
Science
, vol.221
, Issue.4612
, pp. 709-713
-
-
Connolly, M.L.1
-
9
-
-
0029286072
-
Smart - A solvent-accessible triangulated surface generator for molecular graphics and boundary-element applications
-
Zauhar R.J. Smart - A solvent-accessible triangulated surface generator for molecular graphics and boundary-element applications. Journal of Computer-Aided Molecular Design 9 2 (1995) 149-159
-
(1995)
Journal of Computer-Aided Molecular Design
, vol.9
, Issue.2
, pp. 149-159
-
-
Zauhar, R.J.1
-
10
-
-
0032059253
-
A flexible triangulation method to describe the solvent-accessible surface of biopolymers
-
Juffer A.H., and Vogel P.J. A flexible triangulation method to describe the solvent-accessible surface of biopolymers. Journal of Computer-Aided Molecular Design 12 3 (1998) 289-299
-
(1998)
Journal of Computer-Aided Molecular Design
, vol.12
, Issue.3
, pp. 289-299
-
-
Juffer, A.H.1
Vogel, P.J.2
-
11
-
-
0036164145
-
A novel approach for identifying the surface atoms of macromolecules
-
Deanda F., and Pearlman R.S. A novel approach for identifying the surface atoms of macromolecules. Journal of Molecular Graphics and Modelling 20 5 (2002) 415-425
-
(2002)
Journal of Molecular Graphics and Modelling
, vol.20
, Issue.5
, pp. 415-425
-
-
Deanda, F.1
Pearlman, R.S.2
-
12
-
-
0018791943
-
Solvent-accessible surfaces of nucleic acids
-
Alden C.J., and Kim S.-H. Solvent-accessible surfaces of nucleic acids. Journal of Molecular Biology 132 3 (1979) 411-434
-
(1979)
Journal of Molecular Biology
, vol.132
, Issue.3
, pp. 411-434
-
-
Alden, C.J.1
Kim, S.-H.2
-
13
-
-
84986534141
-
A rapid method for calculating derivatives of solvent accessible surface-areas of molecules
-
Sridharan S., Nicholls A., and Sharp K.A. A rapid method for calculating derivatives of solvent accessible surface-areas of molecules. Journal of Computational Chemistry 16 8 (1995) 1038-1044
-
(1995)
Journal of Computational Chemistry
, vol.16
, Issue.8
, pp. 1038-1044
-
-
Sridharan, S.1
Nicholls, A.2
Sharp, K.A.3
-
14
-
-
84986523908
-
Implementation of solvent effect in molecular mechanics. 3. the 1st-order and 2nd-order analytical derivatives of excluded-volume
-
Gogonea V., and Osawa E. Implementation of solvent effect in molecular mechanics. 3. the 1st-order and 2nd-order analytical derivatives of excluded-volume. Theochem-Journal of Molecular Structure 117 (1994) 305-324
-
(1994)
Theochem-Journal of Molecular Structure
, vol.117
, pp. 305-324
-
-
Gogonea, V.1
Osawa, E.2
-
15
-
-
0033527322
-
Approximate solvent-accessible surface areas from tetrahedrally directed neighbor densities
-
Weiser J., Shenkin P.S., and Still W.C. Approximate solvent-accessible surface areas from tetrahedrally directed neighbor densities. Biopolymers 50 4 (1999) 373-380
-
(1999)
Biopolymers
, vol.50
, Issue.4
, pp. 373-380
-
-
Weiser, J.1
Shenkin, P.S.2
Still, W.C.3
-
16
-
-
1942535471
-
Efficient approximate all-atom solvent accessible surface area method parameterized for folded and denatured protein conformations.
-
Guvench O., and Brooks C.L. Efficient approximate all-atom solvent accessible surface area method parameterized for folded and denatured protein conformations. Journal of Computational Chemistry 25 8 (2004) 1005-1014
-
(2004)
Journal of Computational Chemistry
, vol.25
, Issue.8
, pp. 1005-1014
-
-
Guvench, O.1
Brooks, C.L.2
-
17
-
-
0037206810
-
Empirical aqueous solvation models based on accessible surface areas with implicit electrostatics
-
Hou T.J., et al. Empirical aqueous solvation models based on accessible surface areas with implicit electrostatics. Journal of Physical Chemistry B 106 43 (2002) 11295-11304
-
(2002)
Journal of Physical Chemistry B
, vol.106
, Issue.43
, pp. 11295-11304
-
-
Hou, T.J.1
-
19
-
-
0030040323
-
Reduced surface: An efficient way to compute molecular surfaces
-
Sanner M.F., Olson A.J., and Spehner J.C. Reduced surface: An efficient way to compute molecular surfaces. Biopolymers 38 3 (1996) 305-320
-
(1996)
Biopolymers
, vol.38
, Issue.3
, pp. 305-320
-
-
Sanner, M.F.1
Olson, A.J.2
Spehner, J.C.3
-
22
-
-
36448970902
-
Molecular surfaces on proteins via beta shapes
-
Ryu J., Park R., and Kim D.S. Molecular surfaces on proteins via beta shapes. Computer-Aided Design 39 12 (2007) 1042-1057
-
(2007)
Computer-Aided Design
, vol.39
, Issue.12
, pp. 1042-1057
-
-
Ryu, J.1
Park, R.2
Kim, D.S.3
-
23
-
-
0000538815
-
Analytical molecular-surface calculation
-
Connolly M.L. Analytical molecular-surface calculation. Journal of Applied Crystallography 16 OCT (1983) 548-558
-
(1983)
Journal of Applied Crystallography
, vol.16
, Issue.OCT
, pp. 548-558
-
-
Connolly, M.L.1
-
24
-
-
0020802786
-
Computer representation of molecular-surfaces
-
Max N.L. Computer representation of molecular-surfaces. IEEE Computer Graphics and Applications 3 5 (1983) 21-29
-
(1983)
IEEE Computer Graphics and Applications
, vol.3
, Issue.5
, pp. 21-29
-
-
Max, N.L.1
-
25
-
-
0024684819
-
A fast algorithm for generating smooth molecular dot surface representations
-
Moon J.B., and Howe W.J. A fast algorithm for generating smooth molecular dot surface representations. Journal of Molecular Graphics 7 2 (1989) 109-112
-
(1989)
Journal of Molecular Graphics
, vol.7
, Issue.2
, pp. 109-112
-
-
Moon, J.B.1
Howe, W.J.2
-
26
-
-
0024933660
-
Molecular graphics modeling of organometallic reactivity
-
Weber J., et al. Molecular graphics modeling of organometallic reactivity. Computers & Graphics 13 2 (1989) 229-235
-
(1989)
Computers & Graphics
, vol.13
, Issue.2
, pp. 229-235
-
-
Weber, J.1
-
27
-
-
84986465557
-
Computing the electric-potential of biomolecules - Application of a new method of molecular-surface triangulation
-
Zauhar R.J., and Morgan R.S. Computing the electric-potential of biomolecules - Application of a new method of molecular-surface triangulation. Journal of Computational Chemistry 11 5 (1990) 603-622
-
(1990)
Journal of Computational Chemistry
, vol.11
, Issue.5
, pp. 603-622
-
-
Zauhar, R.J.1
Morgan, R.S.2
-
29
-
-
0037375002
-
Dynamic maintenance and visualization of molecular surfaces
-
Bajaj C.L., et al. Dynamic maintenance and visualization of molecular surfaces. Discrete Applied Mathematics 127 1 (2003) 23-51
-
(2003)
Discrete Applied Mathematics
, vol.127
, Issue.1
, pp. 23-51
-
-
Bajaj, C.L.1
-
30
-
-
0003966414
-
-
AK Peters, Ltd., Natick (MA, USA)
-
Möller T., Akenine-Moller T., and Haines E. Real-time rendering. 2 ed. (2002), AK Peters, Ltd., Natick (MA, USA)
-
(2002)
Real-time rendering. 2 ed.
-
-
Möller, T.1
Akenine-Moller, T.2
Haines, E.3
-
32
-
-
0023287929
-
Power diagrams - Properties, algorithms and applications
-
Aurenhammer F. Power diagrams - Properties, algorithms and applications. Siam Journal on Computing 16 1 (1987) 78-96
-
(1987)
Siam Journal on Computing
, vol.16
, Issue.1
, pp. 78-96
-
-
Aurenhammer, F.1
-
33
-
-
33748906998
-
Three-dimensional beta shapes
-
Kim D.S., et al. Three-dimensional beta shapes. Computer-Aided Design 38 11 (2006) 1179-1191
-
(2006)
Computer-Aided Design
, vol.38
, Issue.11
, pp. 1179-1191
-
-
Kim, D.S.1
-
34
-
-
77349115203
-
-
Edelsbrunner H. Weighted alpha shapes. In: Technical report UIUCDCS-R-92-1760. 1992. Department of Computer Science, University of Illinois: Urbana Champagne
-
Edelsbrunner H. Weighted alpha shapes. In: Technical report UIUCDCS-R-92-1760. 1992. Department of Computer Science, University of Illinois: Urbana Champagne
-
-
-
-
35
-
-
51249162203
-
The union of balls and its dual shape
-
Edelsbrunner H. The union of balls and its dual shape. Discrete & Computational Geometry 13 3-4 (1995) 415-440
-
(1995)
Discrete & Computational Geometry
, vol.13
, Issue.3-4
, pp. 415-440
-
-
Edelsbrunner, H.1
-
36
-
-
0036434222
-
Molecular surface modeling and meshing
-
Laug P., and Borouchaki H. Molecular surface modeling and meshing. Engineering with Computers 18 3 (2002) 199-210
-
(2002)
Engineering with Computers
, vol.18
, Issue.3
, pp. 199-210
-
-
Laug, P.1
Borouchaki, H.2
-
37
-
-
77349121893
-
-
CGAL. Computational geometry algorithms library. http://www.cgal.org/
-
-
-
-
38
-
-
0026188539
-
Rational cubic circular arcs and their application in cad
-
Wang G.J. Rational cubic circular arcs and their application in cad. Computers in Industry 16 3 (1991) 283-288
-
(1991)
Computers in Industry
, vol.16
, Issue.3
, pp. 283-288
-
-
Wang, G.J.1
-
40
-
-
0000231709
-
A perturbation scheme for spherical arrangements with application to molecular modeling
-
Halperin D., and Shelton C.R. A perturbation scheme for spherical arrangements with application to molecular modeling. Computational Geometry-Theory and Applications 10 4 (1998) 273-287
-
(1998)
Computational Geometry-Theory and Applications
, vol.10
, Issue.4
, pp. 273-287
-
-
Halperin, D.1
Shelton, C.R.2
-
41
-
-
0027640669
-
An algebraic approach to curves and surfaces on the sphere and on other quadrics
-
Dietz R., Hoschek J., and Juttler B. An algebraic approach to curves and surfaces on the sphere and on other quadrics. Computer Aided Geometric Design 10 3-4 (1993) 211-229
-
(1993)
Computer Aided Geometric Design
, vol.10
, Issue.3-4
, pp. 211-229
-
-
Dietz, R.1
Hoschek, J.2
Juttler, B.3
-
43
-
-
77349124970
-
-
GLSL
-
GLSL. http://www.opengl.org/documentation/glsl/
-
-
-
-
44
-
-
77349101606
-
-
PDB. www.pdb.org
-
-
-
|