Parametric analysis for monitoring 2D kinetics of receptor-ligand binding

Cellular and Molecular Bioengineering

Volumn 2, Issue 4, 2009, Pages 495-503

  Sun, Ganyun ^a   Zhang, Yan ^a   Huo, Bo ^a   Long, Mian ^a  

^a INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

Author keywords

Kinetic rate; Page's test analysis; Random number series; Receptor ligand binding; Sliding standard deviation analysis

Indexed keywords

LIGAND; RECEPTOR;

BIOPHYSICS; COMPARATIVE STUDY; CONFERENCE PAPER; DIAGNOSTIC ACCURACY; GENERATOR; KINETICS; LIGAND BINDING; MONITORING; OPTICAL TWEEZERS; PARAMETRIC TEST; PRIORITY JOURNAL; SAMPLING; SIMULATION;

EID: 77149126413     PISSN: 18655025     EISSN: 18655033     Source Type: Journal    
DOI: 10.1007/s12195-009-0079-1     Document Type: Conference Paper

References (32)

1. SM Albelda 1993 Biology of disease-role of integrins and other cell-adhesion molecules in tumor progression and metastasis Lab. Invest. 68 4 17
2. R Alon DA Hammer TA Springer 1995 Lifetime of the P-selectin-carbohydrate bond and its response to tensile force in hydrodynamic flow Nature 374 539 542 10.1038/374539a0
3. NJ Carter RA Cross 2005 Mechanics of the kinesin step Nature 435 308 312 10.1038/nature03528 (Pubitemid 40745535)
4. BC Carter M Vershinin SP Gross 2008 A comparison of step-detection methods: how well can you do? Biophys. J. 94 306 319 10.1529/biophysj.107.110601
5. W Chen EA Evans RP McEver C Zhu 2008 Monitoring receptor-ligand interactions between surfaces by thermal fluctuations Biophys. J. 94 694 701 10.1529/biophysj.107.117895
6. SE Chesla P Selvaraj C Zhu 1998 Measuring two-dimensional receptor-ligand binding kinetics by micropipette Biophys. J. 75 1553 1572 10.1016/S0006- 3495(98)74074-3
7. E Evans A Leung D Hammer S Simon 2001 Chemically distinct transition states govern rapid dissociation of single L-selectin bonds under force Proc. Natl. Acad. Sci. U.S.A. 98 3784 3789 10.1073/pnas.061324998 (Pubitemid 32249849)
8. E Evans K Ritchie 1997 Dynamic strength of molecular adhesion bonds Biophys. J. 72 1541 1555 10.1016/S0006-3495(97)78802-7
9. JT Finer RM Simmons JA Spudich 1994 Single myosin molecule mechanics-picoNewton forces and nanometer steps Nature 368 113 119 10.1038/368113a0 (Pubitemid 24101520)
10. EB Finger KD Puri R Alon MB Lawrence UH von Andrian TA Springer 1996 Adhesion through L-selectin requires a threshold hydrodynamic shear Nature 379 266 269 10.1038/379266a0
11. E Galkina K Ley 2007 Vascular adhesion molecules in atherosclerosis Arterioscl. Throm. Vasc. 27 2292 2301 10.1161/ATVBAHA.107.149179 (Pubitemid 350203942)
12. J Gelles BJ Schnapp MP Sheetz 1988 Tracking kinesin-driven movements with nanometre-scale precision Nature 331 450 453 10.1038/331450a0 (Pubitemid 18064370)
13. F Grinnell 1992 Wound repair, keratinocyte activation and integrin modulation J. Cell Sci. 101 1 5
14. CM Han PK Willett DA Abraham 1999 Some methods to evaluate the performance of Page's test as used to detect transient signals IEEE Trans. Signal Process. 47 2112 2127 10.1109/78.774747 (Pubitemid 30855924)
15. J Huang J Chen SE Chesla T Yago P Mehta RP McEver C Zhu M Long 2004 Quantifying the effects of molecular orientation and length on two-dimensional receptor-ligand binding kinetics J. Biol. Chem. 279 44915 44923 10.1074/jbc.M407039200 (Pubitemid 39430904)
16. G Kaplanski C Farnarier O Tissot A Pierres AM Benoliel MC Alessi S Kaplanski P Bongrand 1993 Granulocyte endothelium initial adhesion-analysis of transient binding events mediated by E-selectin in a laminar shear-flow Biophys. J. 64 1922 1933 10.1016/S0006-3495(93)81563-7
17. AE Knight C Veigel C Chambers JE Molloy 2001 Analysis of single-molecule mechanical recordings: application to acto-myosin interactions Prog. Biophys. Mol. Biol. 77 45 72 10.1016/S0079-6107(01)00010-4 (Pubitemid 32709984)
18. S Kulin R Kishore JB Hubbard K Helmerson 2002 Real-time measurement of spontaneous antigen-antibody dissociation Biophys. J. 83 1965 1973 10.1016/S0006-3495(02)73958-1
19. JD Levin HP Ting-Beall RM Hochmuth 2001 Correlating the kinetics of cytokine-induced E-selectin adhesion and expression on endothelial cells Biophys. J. 80 656 667 10.1016/S0006-3495(01)76046-8
20. BT Marshall KK Sarangapani J Wu MB Lawrence RP McEver C Zhu 2006 Measuring molecular elasticity by atomic force microscope cantilever fluctuations Biophys. J. 90 681 692 10.1529/biophysj.105.061010
21. AD Mehta JT Finer JA Spudich 1997 Detection of single-molecule interactions using correlated thermal diffusion Proc. Natl. Acad. Sci. U.S.A. 94 7927 7931 10.1073/pnas.94.15.7927 (Pubitemid 27343751)
22. R Merkel P Nassoy A Leung K Ritchie E Evans 1999 Energy landscapes of receptor-ligand bonds explored with dynamic force spectroscopy Nature 397 50 53 10.1038/16219 (Pubitemid 29038244)
23. KC Neuman SM Block 2004 Optical trapping Rev. Sci. Instrum. 75 2787 2809 10.1063/1.1785844
24. ES Page 1954 Continuous inspection schemes Biometrika 41 100 115 0056.38002 88850
25. TA Springer 1995 Traffic signals on endothelium for lymphocyte recirculation and leukocyte emigration Annu. Rev. Physiol. 57 827 872 10.1146/annurev.ph.57.030195.004143
26. G Sun Y Zhang B Huo M Long 2009 Surface-bound selectin-ligand binding is regulated by carrier diffusion Eur. Biophys. J. 38 701 711 10.1007/s00249-009- 0428-y 10.1007/s00249-009-0428-y
27. K Svoboda CF Schmidt BJ Schnapp SM Block 1993 Direct observation of kinesin stepping by optical trapping interferometry Nature 365 721 727 10.1038/365721a0 (Pubitemid 23339876)
28. S Ushiyama TM Laue KL Moore HP Erickson RP McEver 1993 Structural and functional-characterization of monomeric soluble P-selectin and comparison with membrane P-selectin J. Biol. Chem. 268 15229 15237
29. C Veigel ML Bartoo DC White JC Sparrow JE Molloy 1998 The stiffness of rabbit skeletal actomyosin cross-bridges determined with an optical tweezers transducer Biophys. J. 75 1424 1438 10.1016/S0006-3495(98)74061-5
30. C Veigel JE Molloy S Schmitz J Kendrick-Jones 2003 Load-dependent kinetics of force production by smooth muscle myosin measured with optical tweezers Nat. Cell Biol. 5 980 986 10.1038/ncb1060 (Pubitemid 37406911)
31. Wu, L. D., J. G. Wang, X. P. Li, and G. R. Bian. Random process. In: Probability Theory, edited by Fudan University, vol 3. Beijing: People's Education Press, 1981, pp. 374-378.
32. T Yago VI Zarnitsyna AG Klopocki RP McEver C Zhu 2007 Transport governs flow-enhanced cell tethering through L-selectin at threshold shear Biophys. J. 92 330 342 10.1529/biophysj.106.090969 (Pubitemid 46048441)