Design and validation of Segment - freely available software for cardiovascular image analysis

BMC Medical Imaging

Volumn 10, Issue , 2010, Pages

  Heiberg, Einar ^a   Sjögren, Jane ^a   Ugander, Martin ^a   Carlsson, Marcus ^a   Engblom, Henrik ^a   Arheden, Håkan ^a  

^a LUND UNIVERSITY HOSPITAL   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; CARDIOVASCULAR DISEASE; COMPUTER ASSISTED DIAGNOSIS; COMPUTER INTERFACE; COMPUTER LANGUAGE; COMPUTER PROGRAM; IMAGE ENHANCEMENT; INTERNET; METHODOLOGY; THREE DIMENSIONAL IMAGING;

ALGORITHMS; CARDIOVASCULAR DISEASES; IMAGE ENHANCEMENT; IMAGE INTERPRETATION, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; INTERNET; PROGRAMMING LANGUAGES; SOFTWARE DESIGN; SOFTWARE VALIDATION; USER-COMPUTER INTERFACE;

EID: 76949088162     PISSN: None     EISSN: 14712342     Source Type: Journal    
DOI: 10.1186/1471-2342-10-1     Document Type: Article

References (31)

1. Wolf I, Vetter M, Wegner I, Bottger T, Nolden M, Schobinger M, Hastenteufel M, Kunert T, Meinzer HP. The medical imaging interaction toolkit. Medical image analysis 2005, 9:594-604. 10.1016/j.media.2005.04.005, 15896995.
2. Engblom H, Hedström E, Heiberg E, Wagner GS, Pahlm O, Arheden H. Rapid initial reduction of hyperenhanced myocardium after reprefused first myocardial infarction suggest recovery of the peri-infarction zone: One year follow-up by MRI. Circulation Cardiovascular Imaging 2009, 48:47-55.
3. Heiberg E, Engblom H, Engvall J, Hedstrom E, Ugander M, Arheden H. Semi-automatic quantification of myocardial infarction from delayed contrast enhanced magnetic resonance imaging. Scand Cardiovasc J 2005, 39:267-275. 10.1080/14017430500340543, 16269396.
4. Heiberg E, Ugander M, Engblom H, Götberg M, Olivecrona GK, Erlinge D, Arheden H. Automated quantification of myocardial infarction from MR images by accounting for partial volume effects: animal, phantom, and human study. Radiology 2008, 246:581-588. 10.1148/radiol.2461062164, 18055873.
5. Heiberg E, Wigström L, Carlsson M, Bolger AF, Karlsson M. Time Resolved Three-dimensional Automated Segmentation of the Left Ventricle. IEEE Computers in Cardiology 2005; Lyon, France 2005, 599-602.
6. Carlsson M, Osman NF, Ursell PC, Martin AJ, Saeed M. Quantitative MR measurements of regional and global left ventricular function and strain after intramyocardial transfer of VM202 into infarcted swine myocardium. American journal of physiology 2008, 295:H522-532. 2519203, 18539758.
7. Carlsson M, Wilson M, Martin AJ, Saeed M. Myocardial microinfarction after coronary microembolization in swine: MR imaging characterization. Radiology 2009, 250:703-713. 10.1148/radiol.2503081000, 19164123.
8. Furtado AD, Carlsson M, Wintermark M, Ordovas K, Saeed M. Identification of residual ischemia, infarction, and microvascular impairment in revascularized myocardial infarction using 64-slice MDCT. Contrast media & molecular imaging 2008, 3:198-206.
9. Carlsson M, Ugander M, Heiberg E, Arheden H. The quantitative relationship between longitudinal and radial function in left, right, and total heart pumping in humans. American journal of physiology 2007, 293:H636-644.
10. Carlsson M, Ubachs JF, Hedstrom E, Heiberg E, Jovinge S, Arheden H. Myocardium at risk after acute infarction in humans on cardiac magnetic resonance: quantitative assessment during follow-up and validation with single-photon emission computed tomography. JACC Cardiovasc Imaging 2009, 2:569-576. 10.1016/j.jcmg.2008.11.018, 19442942.
11. Engblom H, Hedstrom E, Heiberg E, Wagner GS, Pahlm O, Arheden H. Size and transmural extent of first-time reperfused myocardial infarction assessed by cardiac magnetic resonance can be estimated by 12-lead electrocardiogram. Am Heart J 2005, 150:920.
12. Carlsson M, Ursell PC, Saloner D, Saeed M. Multidetector computed tomography for characterization of calcium deposits in reperfused myocardial infarction. Acta Radiol 2009, 50:396-405. 10.1080/02841850902756540, 19277919.
13. Carlsson M, Martin AJ, Ursell PC, Saloner D, Saeed M. Magnetic resonance imaging quantification of left ventricular dysfunction following coronary microembolization. Magn Reson Med 2009, 61:595-602. 10.1002/mrm.21869, 19097239.
14. Hedstrom E, Engblom H, Frogner F, Astrom-Olsson K, Ohlin H, Jovinge S, Arheden H. Infarct evolution in man studied in patients with first-time coronary occlusion in comparison to different species - implications for assessment of myocardial salvage. J Cardiovasc Magn Reson 2009, 11:38. 10.1186/1532-429X-11-38, 2758877, 19775428.
15. Wu EX, Wu Y, Nicholls JM, Wang J, Liao S, Zhu S, Lau CP, Tse HF. MR diffusion tensor imaging study of postinfarct myocardium structural remodeling in a porcine model. Magn Reson Med 2007, 58:687-695. 10.1002/mrm.21350, 17899595.
16. Gilson WD, Kraitchman DL. Cardiac magnetic resonance imaging in small rodents using clinical 1.5 T and 3.0 T scanners. Methods (San Diego, Calif) 2007, 43:35-45. 2075472, 17720562.
17. Heiberg E. Automated Feature Detection in Multidimensional Images. Thesis 2004, Linköping University, Department of Biomedical Engineering., http://www.heiberg.se/einar/publications/pdf_open/phd.pdf
18. Chernobelsky A, Shubayev O, Comeau CR, Wolff SD. Baseline correction of phase contrast images improves quantification of blood flow in the great vessels. J Cardiovasc Magn Reson 2007, 9:681-685. 10.1080/10976640601187588, 17578724.
19. Bernstein M, Zhou X, Polzin J, King K, Ganin A, Pelc N, Glover G. Concomitant gradient terms in phase contrast MR: analysis and correction. Magnetic Resonance in Medicine 1998, 39:300-308. 10.1002/mrm.1910390218, 9469714.
20. Petzina R, Ugander M, Gustafsson L, Engblom H, Sjogren J, Hetzer R, Ingemansson R, Arheden H, Malmsjo M. Hemodynamic effects of vacuum-assisted closure therapy in cardiac surgery: assessment using magnetic resonance imaging. The Journal of thoracic and cardiovascular surgery 2007, 133:1154-1162. 10.1016/j.jtcvs.2007.01.011, 17467423.
21. Arheden H, Saeed M, Higgins CB, Gao DW, Bremerich J, Wyttenbach R, Dae MW, Wendland MF. Measurement of the distribution volume of gadopentetate dimeglumine at echo-planar MR imaging to quantify myocardial infarction: comparison with 99mTc-DTPA autoradiography in rats. Radiology 1999, 211:698-708.
22. Engblom H, Carlsson MB, Hedstrom E, Heiberg E, Ugander M, Wagner GS, Arheden H. The endocardial extent of reperfused first-time myocardial infarction is more predictive of pathologic Q waves than is infarct transmurality: a magnetic resonance imaging study. Clin Physiol Funct Imaging 2007, 27:101-108. 10.1111/j.1475-097X.2007.00723.x, 17309530.
23. Heiberg E, Engblom H, Ugander M, Arheden H. Automated Calculation of Infarct Transmurality. IEEE Computers in Cardiology; Durham, USA 2007, 165-168.
24. Nilsson B, Heyden A. A fast algorithm for level set-like active contours. Pattern Recognition Letters 2003, 24:1331-1337.
25. Svensson J, Gårdhagen R, Heiberg E, Ebbers T, Loyd D, Länne T, Karlsson M. Feasibility of Patient Specific Aortic Blood Flow CFD Simulation. MICCAI; Copenhagen 2006, 77-86.
26. Soneson H, Ubachs JF, Ugander M, Arheden H, Heiberg E. An Improved Method for Automatic Segmentation of the Left Ventricle in Myocardial Perfusion SPECT. J Nucl Med 2009, 50:205-213. 10.2967/jnumed.108.057323, 19164235.
27. Ugander M, Soneson H, Heiberg E, Engblom H, Pals J, Erlinge D, Arheden H. A novel method for quantifying myocardial perfusion SPECT defect size by co-registration and fusion with MRI - an experimental ex vivo imaging pig heart study. Scand Cardiovasc J, Malmö 2008, 42(Suppl):47.
28. Cerqueira MD, Weissman NJ, Dilsizian V, Jacobs AK, Kaul S, Laskey WK, Pennell DJ, Rumberger JA, Ryan T, Verani MS. Standardized myocardial segmentation and nomenclature for tomographic imaging of the heart: a statement for healthcare professionals from the Cardiac Imaging Committee of the Council on Clinical Cardiology of the American Heart Association. Circulation 2002, 105:539-542. 10.1161/hc0402.102975, 11815441.
29. Cain PA, Ugander M, Palmer J, Carlsson M, Heiberg E, Arheden H. Quantitative polar representation of left ventricular myocardial perfusion, function and viability using SPECT and cardiac magnetic resonance: initial results. Clin Physiol Funct Imaging 2005, 25:215-222. 10.1111/j.1475-097X.2005.00618.x, 15972023.
30. Gering DT, Nabavi A, Kikinis R, Hata N, O'Donnell LJ, Grimson WE, Jolesz FA, Black PM, Wells WM. An integrated visualization system for surgical planning and guidance using image fusion and an open MR. J Magn Reson Imaging 2001, 13:967-975. 10.1002/jmri.1139, 11382961.
31. Lee JT, Munch KR, Carlis JV, Pardo JV. Internet image viewer (iiV). BMC medical imaging 2008, 8:10. 10.1186/1471-2342-8-10, 2430954, 18510765.