Evaluation of a new experimental kit for the extraction of DNA from bones and teeth using a non-powder method

Legal Medicine

Volumn 12, Issue 2, 2010, Pages 84-89

  Kitayama, Tetsushi ^a   Ogawa, Yoshinori ^a   Fujii, Koji ^a   Nakahara, Hiroaki ^a   Mizuno, Natsuko ^a   Sekiguchi, Kazumasa ^a   Kasai, Kentaro ^a   Yurino, Noriko ^b   Yokoi, Takahide ^b   Fukuma, Yoshiya ^b   Yamamoto, Kenji ^b   Oki, Takahito ^c   Asamura, Hideki ^c   Fukushima, Hirofumi ^a  

^a NATIONAL RESEARCH INSTITUTE OF POLICE SCIENCE   (Japan)

^b HITACHI LTD   (Japan)

^c SHINSHU UNIVERSITY SCHOOL OF MEDICINE   (Japan)

Author keywords

Bone; Decalcification; DNA extraction; Forensic; Powder; Second extraction

Indexed keywords

CHLOROFORM; DNA; MITOCHONDRIAL DNA; PHENOL;

ARTICLE; BONE; CLINICAL LABORATORY; DNA EXTRACTION; DNA SEQUENCE; FORENSIC IDENTIFICATION; HUMAN; HUMAN TISSUE; INTERMETHOD COMPARISON; METHODOLOGY; POLYMERASE CHAIN REACTION; POWDER; SHORT TANDEM REPEAT; SKELETON; TOOTH;

BONE AND BONES; DECALCIFICATION TECHNIQUE; DNA; FORENSIC ANTHROPOLOGY; FORENSIC GENETICS; HUMANS; SEQUENCE ANALYSIS, DNA; TOOTH;

EID: 76849116940     PISSN: 13446223     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.legalmed.2009.12.004     Document Type: Article

References (28)

1. Clayton T.M., Whitaker J.P., and Maguire C.N. Identification of bodies from the scene of a mass disaster using DNA amplification of short tandem repeat (STR) loci. Forensic Sci Int 76 (1995) 7-15
2. Holland M.M., Cave C.A., Holland C.A., and Bille T.W. Development of a quality, high throughput DNA analysis procedure for skeletal samples to assist with the identification of victims from the World Trade Center attacks. Croat Med J 44 (2003) 264-272
3. Alonso A., Martin P., Albarran C., Garcia P., Fernandez de Simon L., Jesus Iturralde M., et al. Challenges of DNA profiling in mass disaster investigations. Croat Med J 46 (2005) 540-548
4. Hochmeister M.N., Budowle B., Borer U.V., Eggmann U., Comey C.T., and Dirnhofer R. Typing of deoxyribonucleic acid (DNA) extracted from compact bone from human remains. J Forensic Sci 36 (1991) 1649-1661
5. Lassen C., Hummel S., and Herrmann B. Comparison of DNA extraction and amplification from ancient human bone and mummified soft tissue. Int J Legal Med 107 (1994) 152-155
6. Perry III W.L., Bass W.M., Riggsby W.S., and Sirotkin K. The autodegradation of deoxyribonucleic acid (DNA) in human rib bone and its relationship to the time interval since death. J Forensic Sci 33 (1988) 144-153
7. von Wurmb-Schwark N., Heinrich A., Freudenberg M., Gebuhr M., and Schwark T. The impact of DNA contamination of bone samples in forensic case analysis and anthropological research. Leg Med 10 (2008) 125-130
8. Kemp B.M., and Smith D.G. Use of bleach to eliminate contaminating DNA from the surface of bones and teeth. Forensic Sci Int 154 (2005) 53-61
9. Anderung C., Persson P., Bouwman A., Elburg R., and Gotherstrom A. Fishing for ancient DNA. Forensic Sci Int Genet 2 (2008) 104-107
10. Zehner R. "Foreign" DNA in tissue adherent to compact bone from tsunami victims. Forensic Sci Int Genet 1 (2007) 218-222
11. Holland M.M., Fisher D.L., Mitchell L.G., Rodriquez W.C., Canik J.J., Merril C.R., et al. Mitochondrial DNA sequence analysis of human skeletal remains: identification of remains from the Vietnam War. J Forensic Sci 38 (1993) 542-553
12. Hoff-Olsen P., Mevag B., Staalstrom E., Hovde B., Egeland T., and Olaisen B. Extraction of DNA from decomposed human tissue An evaluation of five extraction methods for short tandem repeat typing. Forensic Sci Int 105 (1999) 171-183
13. Loreille O.M., Diegoli T.M., Irwin J.A., Coble M.D., and Parsons T.J. High efficiency DNA extraction from bone by total demineralization. Forensic Sci Int Genet 1 (2007) 191-195
14. Rohland N., and Hofreiter M. Ancient DNA extraction from bones and teeth. Nat Protoc 2 (2007) 1756-1762
15. Parsons T.J., Huel R., Davoren J., Katzmarzyk C., Milos A., Selmanovic A., et al. Application of novel "mini-amplicon" STR multiplexes to high volume casework on degraded skeletal remains. Forensic Sci Int Genet 1 (2007) 175-179
16. Rohland N., and Hofreiter M. Comparison and optimization of ancient DNA extraction. Biotechniques 42 (2007) 343-352
17. Fukushima H, Oki T, Asamura H, Ota Masao, Nagasaki K, Fukuma Y, editors. DNA extraction without powdering from bone and teeth. Proceedings of 18th International Symposium on Human Identification; 2007 Oct 1-4; Hollywood, CA. Madison: Promega; 2007.
18. Imaizumi K., Noguchi K., Shiraishi T., Sekiguchi K., Senju H., Fujii K., et al. DNA typing of bone specimens - the potential use of the profiler test as a tool for bone identification. Leg Med 7 (2005) 31-41
19. Waye J.S., and Willard H.F. Structure, organization, and sequence of alpha satellite DNA from human chromosome 17: evidence for evolution by unequal crossing-over and an ancestral pentamer repeat shared with the human X chromosome. Mol Cell Biol 6 (1986) 3156-3165
20. Mizuno N., Kitayama T., Fujii K., Nakahara H., Yoshida K., Sekiguchi K., et al. A forensic method for the simultaneous analysis of biallelic markers identifying Y chromosome haplogroups inferred as having originated in Asia and the Japanese archipelago. Forensic Sci Int Genet 4 (2010) 73-79
21. Nakahara H., Fujii K., Mizuno N., Yoshida K., and Kasai K. Evaluations of DNA quantification methods for forensic biological samples. Jpn J Forensic Sci Tech 12 (2007) 13-26
22. Sekiguchi K., Imaizumi K., Fujii K., Mizuno N., Ogawa Y., Akutsu T., et al. Mitochondrial DNA population data of HV1 and HV2 sequences from Japanese individuals. Leg Med 10 (2008) 284-286
23. Evison M.P., Smillie D.M., and Chamberlain A.T. Extraction of single-copy nuclear DNA from forensic specimens with a variety of postmortem histories. J Forensic Sci 42 (1997) 1032-1038
24. Salamon M., Tuross N., Arensburg B., and Weiner S. Relatively well preserved DNA is present in the crystal aggregates of fossil bones. Proc Natl Acad Sci USA 102 (2005) 13783-13788
25. Pääbo S., Poinar H., Serre D., Jaenicke-Despres V., Hebler J., Rohland N., et al. Genetic analyses from ancient DNA. Annu Rev Genet 38 (2004) 645-679
26. Hagelberg E., and Clegg J.B. Isolation and characterization of DNA from archaeological bone. Proc Biol Sci 244 (1991) 45-50
27. Tsukada K., Takayanagi K., Asamura H., Ota M., and Fukushima H. Multiplex short tandem repeat typing in degraded samples using newly designed primers for the TH01, TPOX, CSF1PO, and vWA loci. Leg Med 4 (2002) 239-245
28. Butler J.M., Shen Y., and McCord B.R. The development of reduced size STR amplicons as tools for analysis of degraded DNA. J Forensic Sci 48 (2003) 1054-1064