Incongruence between molecular phylogeny and morphological classification in amphipod crustaceans: A case study of Antarctic lysianassoids

Molecular Phylogenetics and Evolution

Volumn 55, Issue 1, 2010, Pages 202-209

  Havermans, Charlotte ^a,b   Nagy, Zoltán T ^a   Sonet, Gontran ^a   De Broyer, Claude ^a   Martin, Patrick ^a  

^a ROYAL BELGIAN INSTITUTE OF NATURAL SCIENCES   (Belgium)

^b UNIVERSITÉ CATHOLIQUE DE LOUVAIN   (Belgium)

Author keywords

28S rRNA; Amphipoda; COI; Lysianassoidea; Molecular phylogeny; Southern Ocean

Indexed keywords

CYTOCHROME C OXIDASE; MITOCHONDRIAL DNA; RNA 28S;

AMPHIPODA; ANIMAL; ANTARCTICA; ARTICLE; BIOLOGICAL MODEL; CLASSIFICATION; DNA SEQUENCE; GENETICS; HISTOLOGY; MOLECULAR EVOLUTION; PHYLOGENY; SEQUENCE ALIGNMENT;

AMPHIPODA; ANIMALS; ANTARCTIC REGIONS; DNA, MITOCHONDRIAL; ELECTRON TRANSPORT COMPLEX IV; EVOLUTION, MOLECULAR; MODELS, GENETIC; PHYLOGENY; RNA, RIBOSOMAL, 28S; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

ABYSSORCHOMENE; AMPHIPODA; CRUSTACEA; LYSIANASSOIDEA; ORCHOMENELLA;

EID: 76849113256     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2009.10.025     Document Type: Article

References (59)

1. Apakupakul K., Siddall M.E., and Burreson E.M. Higher level relationships of leeches (Annelida: Clitellata: Euhirudinea) based on morphology and gene sequences. Mol. Phylogenet. Evol. 12 (1999) 350-359
2. Arnaud P.M., Jażdżewski K., Presler P., and Siciński J. Preliminary survey of benthic invertebrates collected by Polish Antarctic Expeditions in the Admiralty Bay (King George Island, South Shetlands, Antarctica). Pol. Polar Res. 7 (1986) 7-24
3. Barnard J.L. Marine Amphipoda of Bahia de San Quintin, Baja California. Pacific Naturalist 4 (1964) 56-139
4. Barnard J.L., and Barnard C.M. Freshwater Amphipoda of the World I & II (1983), Hayfield Associates, Mt. Vernon, VA p. 471
5. Barnard J.L., and Ingram C. Lysianassoid Amphipoda (Crustacea) from deep-sea hydrothermal vents. Smithson. Contrib. Zool. 499 (1990) 1-80
6. Barnard J.L., and Karaman G.S. The higher classification in amphipods. Crustaceana 28 (1975) 304-310
7. Barnard J.L., and Karaman G. The families and genera of marine Gammaridean Amphipoda (except marine Gammaroids). Part 1. Rec. Aust. Mus. 13 (1991) 1-866
8. Bellan-Santini D. Amphipodes provenant des contenus stomacaux de trois espèces de poissons Nototheniidae récoltés en Terre Adélie (Antarctique). Tethys 4 (1972) 683-702
9. Bellan-Santini D. Invertébrés marins des XIIème et XVème expéditions antarctiques françaises en Terre Adélie. 10. Amphipodes gammariens. Tethys Suppl. 4 (1972) 157-238
10. Bousfield E.L. An updated phyletic classification and palaeohistory of the Amphipoda. In: Schram F.R. (Ed). Crustacean Phylogeny, Crustacean Issues 1 (1983), A.A. Balkema, Rotterdam 257-277
11. Bousfield E.L., and Shih C. The phyletic classification of amphipod crustaceans: problems in resolution. Amphipacifica 1 (1994) 76-134
12. Brandt A. On the origin and evolution of Antarctic Peracarida (Crustacea, Malacostraca). Sci. Mar. 63 (1999) 261-274
13. Brandt A. Hypotheses on Southern Ocean peracarid evolution and radiation (Crustacea, Malacostraca). Antarct. Sci. 12 (2000) 269-275
14. Brandt A. Evolution of Antarctic biodiversity in the context of the past: the importance of the Southern Ocean deep sea. Antarct. Sci. 17 (2005) 509-521
15. Brandt A., Gooday A.J., Brandão S.N., Brix S., Brökeland W., Cedhagen T., Choudhury M., Cornelius N., Danis B., De Mesel I., Diaz R.J., Gillan D.C., Ebbe B., Howe J.A., Janussen D., Kaiser S., Linse K., Malyutina M., Pawlowski J., Raupach M., and Vanreusel A. First insights into the biodiversity and biogeography of the Southern Ocean deep sea. Nature 447 (2007) 307-311
16. Chevreux E. Amphipodes. In: Joubin L. (Ed). Deuxième Expédition Antarctique Française (1908-1910) Commandée par le Dr. Jean Charcot. Sciences Naturelles: Documents Scientifiques (1913), Masson et Cie, Paris 93
17. Clarke A., and Johnston N.M. Antarctic marine benthic diversity. Oceanogr. Mar. Biol. Annu. Rev. 41 (2003) 47-114
18. Dahl E. Deep-sea carrion feeding amphipods: evolutionary patterns in niche adaptation. Oikos 33 (1979) 167-175
19. De Broyer, C., 1983. Recherches sur la systématique et l'évolution des crustacés amphipodes gammarides antarctiques et subantarctiques. Université Catholique de Louvain, Louvain-la-Neuve, Belgium, Unpublished PhD thesis.
20. De Broyer C. Evolution du complexe Orchomene Boeck (Amphipoda, Lysianassidae). Ann. Soc. R. Zool. Belg. 114 (1984) 197-198
21. De Broyer C. Amphipodes lysianassoïdes nécrophages des îles Kerguelen (Crustacea): 1. Orchomenella guillei n. sp. Bull. Mus. Natl. Hist. Nat. Sect. A 7 (1985) 205-217
22. De Broyer C. Description de Falklandia gen. n. de l'Océan Austral et définition des Lysianassoidea uristidiens (Crustacea, Amphipoda). Zool. Scr. 14 (1985) 303-312
23. De Broyer, C., Rauschert, M., Scailteur, Y., 1999. Structural and ecofunctional biodiversity of the benthic amphipod taxocenoses. In: Arntz, W., Gutt, J. (Eds.), The expedition ANTARKTIS XV/3 (EASIZ II) of Polarstern in 1998. Ber. Polarforsch. vol. 301, pp. 163-174.
24. De Broyer C., Scailteur Y., Chapelle G., and Rauschert M. Diversity of epibenthic habitats of gammaridean amphipods in the eastern Weddell Sea. Polar Biol. 24 (2001) 744-753
25. De Broyer, C., Dauby, P., Nyssen, F., Martin, P., 2003a. Biodiversity, molecular phylogeny and trophodynamics of amphipod crustaceans in the Antarctic deep sea. In: Fütterer, D.K., Brandt, A., Poore, G.C.B. (Eds.), The expeditions ANTARKTIS XIX/3-4 of the Research Vessel POLARSTERN in 2002. Ber. Polar. Meeresforsch. vol. 470, pp. 81-86.
26. De Broyer, C., Nyssen, F., Rauschert, M., Lörz, A.-N., Cariceo, Y., Ríos, C., 2003b. Biodiversity, biogeography, phylogeny and trophodynamics of amphipod and isopod crustaceans. In: Arntz, W.E., Brey, T. (Eds.), Report of the R/V Polarstern Cruise ANT XIX/3 LAMPOS in 2002. Ber. Polar. Meeresforsch. vol. 462, pp. 34-44.
27. De Broyer C., Nyssen F., and Dauby P. The crustacean scavenger guild in Antarctic shelf, bathyal and abyssal communities. Deep Sea Res. II: Top. Stud. Oceanogr. 51 (2004) 1733-1752
28. De Broyer, C., Danis, B., Heterier, V., 2006. Biodiversity, phylogeny and trophodynamics of amphipod crustaceans in the Antarctic deep sea. In: Fahrbach, E. (Ed.), The expedition ANTARKTIS XXII-3 of the Research Vessel Polarstern in 2005. Ber. Polar. Meeresforsch. vol. 533, pp. 135-141.
29. De Broyer, C., Lowry, J.K., Jażdżewski, K., Robert, H., 2007. Catalogue of the Gammaridean and Corophiidean Amphipoda (Crustacea) of the Southern Ocean with distribution and ecological data. In: De Broyer C. (Ed.), Census of Antarctic Marine Life: Synopsis of the Amphipoda of the Southern Ocean. Bull. Inst. R. Sci. Nat. Belgique Biol. vol. 77, pp. 1-325.
30. Englisch U., Coleman C.O., and Wägele J.W. First observations on the phylogeny of the families Gammaridae, Crangonyctidae, Melitidae, Niphargidae, Megaluropidae and Oedicerotidae (Amphipoda, Crustacea), using small subunit rDNA gene sequences. J. Nat. Hist. 37 (2003) 2461-2486
31. Fišer C., Sket B., and Trontelj P. A phylogenetic perspective on 160 years of troubled taxonomy of Niphargus (Crustacea: Amphipoda). Zool. Scr. 37 (2008) 665-680
32. Folmer O., Black M., Hoeh R., Lutz R., and Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 3 (1994) 294-299
33. Griffiths H.J., Barnes D.K.A., and Linse K. Towards a generalized biogeography of the Southern Ocean benthos. J. Biogeogr. 36 (2009) 162-177
34. Hou Z., Fu J., and Li S. A molecular phylogeny of the genus Gammarus (Crustacea: Amphipoda) based on mitochondrial and nuclear gene sequences. Mol. Phylogenet. Evol. 45 (2007) 596-611
35. Hurley, D.E., 1963. Amphipoda of the family Lysianassidae from the West Coast of North and Central America. Allan Hancock Foundation, Occasional Paper, vol. 25. University of Southern California Press, Los Angeles, pp. 1-165.
36. Ito A., Wada H., and Aoki M.N. Phylogenetic analysis of caprellid and corophioid amphipods (Crustacea) based on the 18S rRNA gene, with special emphasis on the phylogenetic position of Phtisicidae. Biol. Bull. 214 (2008) 176-183
37. Katoh K., Misawa K., Kuma K., and Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30 (2002) 3059-3066
38. Katoh K., and Toh H. Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. BMC Bioinformatics 9 (2008) 212
39. Lörz A.-N., and Brandt A. Phylogeny of Antarctic Epimeria (Epimeriidae: Amphipoda). J. Mar. Biol. Assoc. UK 84 (2004) 179-190
40. Lörz A.-N., and Held C. A preliminary molecular and morphological phylogeny of the Antarctic Epimeriidae and Iphimediidae (Crustacea, Amphipoda). Mol. Phylogenet. Evol. 31 (2004) 4-15
41. Lowry J.K., and Stoddart H.E. A revision of the genus Ichnopus (Crustacea: Amphipoda: Lysianassoidea: Uristidae). Rec. Aust. Mus. 44 (1992) 185-245
42. Lowry, J.K., Stoddart, H.E., 1994. Crustacea Amphipoda: lysianassoids from the tropical western South Pacific Ocean. In: Crosnier, A. (Ed.), Résultats des campagnes MUSORSTOM 12. Mem. Mus. Natl. Hist. Nat. (France), vol. 161, pp. 127-233.
43. Lowry J.K., and Stoddart H.E. Amphipoda Crustacea IV. Mem. Hourglass Cruises 10 (1997) 1-130
44. Macdonald K.S.I.I.I., Yampolsky L., and Duffy J.E. Molecular and morphological evolution of the amphipod radiation in Lake Baikal. Mol. Phylogenet. Evol. 35 (2005) 323-343
45. Martin, J.W., Davis, G.E., 2001. An updated classification of the Recent Crustacea. Natural History Museum of Los Angeles County Science Series 39, Los Angeles.
46. Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 25 (2008) 1253-1256
47. Raupach M.J., Mayer C., Malyutina M., and Wägele J.-W. Multiple origins of deep-sea Asellota (Crustacea: Isopoda) from shallow waters revealed by molecular data. Proc. R. Soc. Lond. B.: Biol. Sci. 276 (2009) 799-808
48. Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian Phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
49. Rüber L., Verheyen E., and Meyer A. Replicated evolution of trophic specializations in an endemic cichlid fish lineage from Lake Tanganyika. Proc. Natl. Acad. Sci. USA 96 (1999) 10230-10235
50. Schellenberg A. Die Gammariden der Deutschen Südpolar-Expedition 1901-1903. Deutsch Südpolar-Exped. (Zool.) 18 (1926) 235-414
51. Shulenberger E., and Barnard J.L. Amphipods from an abyssal trap set in the North Pacific Gyre. Crustaceana 31 (1976) 241-258
52. Slattery P.N., and Oliver J.S. Scavenging and other feeding habits of lysianassid amphipods (Orchomene ssp.) from McMurdo Sound, Antarctica. Polar Biol. 6 (1986) 171-177
53. Stebbing, T.R.R., 1888. Report on the Amphipoda collected by H.M.S. Challenger during the years 1873-76. Report on the Scientific Results of the Voyage of H.M.S. Challenger during the years 1873-76. Zoology 29, 1-1737 (pls. 1-210).
54. Swofford D.L. PAUP*. Phylogenetic Analysis using Parsimony (*and other methods). Version 4.0b10 (2002), Sinuaer, Sunderland, Massachusetts
55. Thatje, S., Hillenbrand, C.-D., Larter, R., 2005. On the origin of the Antarctic marine benthic community structure. Trends Ecol. Evol. 20.
56. Thurston M.H. Two new species of Orchomene Boeck (Crustacea: Amphipoda) from the Falkland Islands, South Georgia and Graham Land. Br. Antarct. Surv. Bull. 30 (1972) 51-63
57. Thurston M.H. Scavenging abyssal amphipods from the North-East Atlantic Ocean. Mar. Biol. 51 (1979) 55-68
58. d'Udekem d'Acoz, C., Robert, H., 2008. Systematic and ecological diversity of amphipods. In: Gutt, J. (Ed.), The expedition ANTARKTIS-XXIII/8 of the Research Vessel "Polarstern" in 2006/2007. Ber. Polar. Meeresforsch. vol. 569, pp. 48-56.
59. Watling L.E., and Thurston M.H. Antarctica as an evolutionary incubator: evidence from the cladistic biogeography of the amphipod family Iphimediidae. In: Crame J.A. (Ed). Origins and Evolution of the Antarctic Biota (1989), The Geological Society, London 297-313