Phylogenetic relationships of the western North American cyprinid genus Richardsonius, with an overview of phylogeographic structure

Molecular Phylogenetics and Evolution

Volumn 55, Issue 1, 2010, Pages 259-273

  Houston, Derek D ^a   Shiozawa, Dennis K ^b   Riddle, Brett R ^a  

^a UNIVERSITY OF NEVADA   (United States)

^b BRIGHAM YOUNG UNIVERSITY   (United States)

Author keywords

Biogeography; Clinostomus; Cyprinidae; Drainage history; Iotichthys; Lahontan redside shiner; Redside shiner

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; CELL NUCLEUS; CLASSIFICATION; CYPRINIFORMES; DNA SEQUENCE; FOSSIL; GENETICS; GEOGRAPHY; MOLECULAR EVOLUTION; NORTH AMERICA; PHYLOGENY; SEQUENCE ALIGNMENT;

ANIMALS; BAYES THEOREM; CELL NUCLEUS; CYPRINIDAE; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; FOSSILS; GEOGRAPHY; MODELS, GENETIC; NORTH AMERICA; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

CLINOSTOMUS; CYPRINIDAE; CYPRINIFORMES; IOTICHTHYS; PISCES; RICHARDSONIUS; RICHARDSONIUS EGREGIUS;

EID: 76849099285     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2009.10.017     Document Type: Article

References (117)

1. Alexander L.F., and Riddle B.R. Phylogenetics of the new world rodent family heteromyidae. J. Mamm. 86 (2005) 366-379
2. Avise J.C. Molecular Markers, Natural History and Evolution. second ed. (2004), Sinauer Associates, Sunderland, MA
3. Beranek L.P., Link P.K., and Fanning C.M. Miocene to Holocene landscape evolution of the western Snake River Plain region, Idaho: using the SHRIMP detrital zircon provenance record to track eastward migration of the Yellowstone hotspot. Geol. Soc. Am. Bull. 118 (2006) 1027-1050
4. Berendzen P.B., Gamble T., and Simons A.M. Phylogeography of the bigeye chub Hybopsis amblops (Teleostei: Cypriniformes): early Pleistocene diversification and post-glacial range expansion. J. Fish Biol. 73 (2008) 2021-2039
5. Bermingham E., and Avise J.C. Molecular zoogeography of freshwater fishes in the southeastern United States. Genetics 113 (1986) 939-965
6. Bernatchez L., and Wilson C.C. Comparative phylogeography of nearctic and palearctic fishes. Mol. Ecol. 7 (1998) 431-452
7. Bisson P.A., and Bond C.A. Origin and distribution of the fishes of Harney Basin, Oregon. Copeia 1971 (1971) 268-281
8. Blum M.J., Neely D.A., Harris P.M., and Mayden R.L. Molecular systematics of the cyprinid genus Campostoma (Actinopterygii: Cypriniformes): disassociation between morphological and mitochondrial differentiation. Copeia 2008 (2008) 360-369
9. Briggs J.C. Ostariophysan zoogeography - alternative hypothesis. Copeia 1979 (1979) 111-118
10. Briggs J.C. The biogeography of otophysan fishes (Ostariophysi: Otophysi): a new appraisal. J. Biogeogr. 32 (2005) 287-294
11. Broughton R.E., and Reneau P.C. Spatial covariation of mutation and nonsynonymous substitution rates in vertebrate mitochondrial genomes. Mol. Biol. Evol. 23 (2006) 1516-1524
12. Brunsfeld S.J., Sullivan J., Soltis D.E., and Soltis P.S. Comparative phylogeography of northwestern North America. In: Silvertown J., and Antonovics J. (Eds). Integrating Ecology and Evolution in a Spatial Context (2001), Blackwell Science Ltd., Malden, MA, USA 319-339
13. Carstens B.C., Stevenson A.L., Degenhardt J.D., and Sullivan J. Testing nested phylogenetic and phylogeographic hypotheses in the Plethodon vandykei species group. Syst. Biol. 53 (2004) 781-792
14. Carstens B.C., Brunsfeld S.J., Demboski J.R., Good J.M., and Sullivan J. Investigating the evolutionary history of the Pacific Northwest mesic forest ecosystem: hypothesis testing within a comparative phylogeographic framework. Evolution 59 (2005) 1639-1652
15. Carstens B.C., Degenhardt J.D., Stevenson A.L., and Sullivan J. Accounting for coalescent stochasticity in testing phylogeographical hypotheses: modeling Pleistocene population structure in the Idaho giant salamander Dicamptodon aterrimus. Mol. Ecol. 14 (2005) 255-265
16. Castoe T.A., Spencer C.L., and Parkinson C.L. Phylogeographic structure and historical demography of the western diamondback rattlesnake (Crotalus atrox): a perspective on North American desert biogeography. Mol. Phylogenet. Evol. 42 (2007) 193-212
17. Cavender T.M. The fossil record of the Cyprinidae. In: Winfield I.J., and Nelson J.S. (Eds). Cyprinid Fishes: Systematics, Biology and Exploitation (1991), Chapman and Hall, New York 34-54
18. Cavender T.M., and Coburn M.M. Phylogenetics of North American Cyprinidae. In: Mayden R.L. (Ed). Systematics, Historical Ecology, and North American Freshwater Fishes (1992), Stanford University Press, Stanford, CA 293-327
19. Chow S., and Hazama K. Universal PCR primers for S7 ribosomal protein gene introns in fish. Mol. Ecol. 7 (1998) 1255-1256
20. Coburn M.M., and Cavender T.M. Interrelationships of North American cyprinid fishes. In: Mayden R.L. (Ed). Systematics, Historical Ecology, and North American Freshwater Fishes (1992), Stanford University Press, Stanford, CA 328-373
21. Demboski J.R., and Cook J.A. Phylogeography of the dusky shrew, Sorex monticolus (Insectivora: Soricidae): insight into deep and shallow history in northwestern North America. Mol. Ecol. 10 (2001) 1227-1240
22. Doadrio I., and Carmona J.A. Phylogenetic relationships and biogeography of the genus Chondrostoma inferred from mitochondrial DNA sequences. Mol. Phylogenet. Evol. 33 (2004) 802-815
23. Dowling T.E., Tibbets C.A., Minckley W.L., and Smith G.R. Evolutionary relationships of the plagopterins (Teleostei: Cyprinidae) from cytochrome b sequences. Copeia 2002 (2002) 665-678
24. Dowling T.E., and Naylor G.J.P. Evolutionary relationships of minnows in the genus Luxilus (Teleostei: Cyprinidae) as determined from cytochrome b sequences. Copeia 1997 (1997) 758-765
25. Dmitriev D.A., and Rakitov R.A. Decoding of superimposed traces produced by direct sequencing of heterozygous indels. PLoS Comput. Biol. 4 (2008) e1000113
26. Drummond A.J., Ho S.Y.W., Phillips M.J., and Rambaut A. Relaxed phylogenetics and dating with confidence. PLoS Biol. 4 (2006) e88
27. Drummond A.J., and Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7 (2007) 214
28. English J.M., and Johnston S.T. The Laramide Orogeny: what were the driving forces?. Int. Geol. Rev. 46 (2004) 833-838
29. Estabrook G.F., Smith G.R., and Dowling T.E. Body mass and temperature influence rates of mitochondrial DNA evolution in North American cyprinid fish. Evolution 61 (2007) 1176-1187
30. Felsenstein J. Confidence-limits on phylogenies - an approach using the bootstrap. Evolution 39 (1985) 783-791
31. Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
32. He S.P., Mayden R.L., Wang X.Z., Wang W., Tang K.L., Chen W.J., and Chen Y.Y. Molecular phylogenetics of the family Cyprinidae (Actinopterygii: Cypriniformes) as evidenced by sequence variation in the first intron of S7 ribosomal protein-coding gene: further evidence from a nuclear gene of the systematic chaos in the family. Mol. Phylogenet. Evol. 46 (2008) 818-829
33. Hershler R., and Gustafson D.L. First record for springsnails (Mollusca: Hydrobiidae: Pyrgulopsis) from the northern Rocky Mountains. Proc. Biol. Soc. Wash. 114 (2001) 297-308
34. Hershler R., Liu H., and Gustafson D.L. A second species of Pyrgulopsis (Hydrobiidae) from the Missouri River basin, with molecular evidence supporting faunal origin through Pliocene stream capture across the northern continental divide. J. Mollus. Stud. 74 (2008) 403-413
35. Hershler R., and Sada D.W. Biogeography of Great Basin aquatic snails of the genus Pyrgulopsis. In: Hershler R., Madsen D.B., and Currey D.R. (Eds). Great Basin Aquatic Systems History. Smithsonian Contributions to the Earth Sciences Number 33 (2002), Smithsonian Institution Press 255-276
36. Hershler R., and Liu H. A molecular phylogeny of aquatic gastropods provides a new perspective on biogeographic history of the Snake River region. Mol. Phylogenet. Evol. 32 (2004) 927-937
37. Hewitt G.M. Genetic consequences of climatic oscillations in the Quaternary. Philos. Trans. R. Soc. Lond. B 359 (2004) 183-195
38. Hillis D.M. Inferring complex phylogenies. Nature 383 (1996) 130-131
39. Houston D.D., and Belk M.C. Geographic variation in somatic growth of redside shiner. Trans. Am. Fish. Soc. 135 (2006) 801-810
40. Houston, D.D., Ogden, T.H., Whiting, M.F., Shiozawa, D.K., in press. Polyphyly of the pikeminnows (Teleostei: Cyprinidae) inferred using mitochondrial DNA sequences. Trans. Am. Fish. Soc.
41. Hubbs, C.L., Miller, R.R., 1948. The zoological evidence: correlation between fish distributions and the hydrographic history in the desert basins of western United States, pp. 18-144. In: The Great Basin, with emphasis on glacial and postglacial times. Bull. Univ. Utah 38(20), Biological Series, vol. X, No. 7.
42. Huelsenbeck J.P., and Ronquist F. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
43. Jobb, G., 2005. TREEFINDER Version of October 2005. Munich, Germany. Distributed by the author at www.treefinder.de.
44. Johnson J.B. Evolution after the flood: phylogeography of the desert fish Utah chub (Gila atraria). Evolution 56 (2002) 948-960
45. Johnson J.B., Dowling T.E., and Belk M.C. Neglected taxonomy of rare desert fishes: congruent evidence for two species of leatherside chub. Syst. Biol. 53 (2004) 841-855
46. Kimmel, P.G., 1975. Fishes of the Miocene-Pliocene Deer Butte Formation, southeast Oregon. University of Michigan Museum of Paleontology. Papers on Paleontology 14, 69-87.
47. Kimmel P.G. Stratigraphy, age and tectonic setting of the Miocene-Pliocene lacustrine sediments of the western Snake River Plain, OR & ID. In: Breckenridge B., and Bonnichsen R.M. (Eds). Cenozoic Geology of Idaho (1982), Idaho Bureau of Mines and Geology 559-578
48. Klicka J., and Zink R.M. The importance of recent ice ages in speciation: a failed paradigm. Science 277 (1997) 1666-1669
49. Kohn M.J., and Fremd T.J. Miocene tectonics and climate forcing of biodiversity, Western United States. Geology 36 (2008) 783-786
50. La Rivers I. Fishes and Fisheries of Nevada (1994), University of Nevada Press, Reno, NV
51. Lee, D.S., Gilbert, C.R., Hocutt, C.H., Jenkins, R.E., McAllister, D.E., Stauffer Jr., J.R., 1980. Atlas of North American Freshwater Fishes. Publication #1980-12 of the North Carolina Biological Survey.
52. Lindsey C.C. Variation in anal fin ray count of the redside shiner Richardsonius balteatus (Richardson). Can. J. Zool. 31 (1953) 211-225
53. Lindsey C.C., and Northcote T.G. Life history of redside shiners, Richardsonius balteatus, with particular reference to movements in and out of Sixteenmile Lake streams. J. Fish. Res. Board Can. 20 (1963) 1001-1030
54. Link P.K., McDonald H.G., Fanning C.M., and Godfrey A.E. Detrital zircon evidence for Pleistocene drainage reversal at Hagerman Fossil Beds National Monument, Central Snake River Plain, Idaho. Idaho Geol. Surv. Bull. 30 (2002) 105-119
55. Link P.K., Fanning C.M., and Beranek L.P. Reliability and longitudinal change of detrital-zircon age spectra in the Snake River system, Idaho and Wyoming: an example of reproducing the bumpy barcode. Sed. Geol. 182 (2005) 101-142
56. Liu H., and Hershler R. A test of the vicariance hypothesis of western North American freshwater biogeography. J. Biogeogr. 34 (2007) 534-548
57. Maddison D.R., and Maddison W.P. MacClade 4: Analysis of Phylogeny and Character Evolution. Version 4.08 (2005), Sinauer Associates, Sunderland, Massachussetts
58. May, B.E., Leppink, J.D., Wydoski, R.S., 1978. Distribution, systematics, and biology of the Bonneville cutthroat trout, Salmo clarki utah. Utah Division of Wildlife Resources Publication 78-15.
59. Mayden R.L. Phylogenetic studies of North American minnows, with emphasis on the genus Cyprinella (Teleostei: Cypriniformes). Misc. Publ. Univ. Kans. Mus. Nat. Hist. 80 (1989) 1-189
60. Mayden R.L. Cyprinids of the new world. In: Winfield I.J., and Nelson J.S. (Eds). Cyprinid Fishes Systematics, Biology and Exploitation (1991), Chapman and Hall, New York 240-263
61. McGuigan K., Zhu D., Allen G.R., and Moritz C. Phylogenetic relationships and historical biogeography of melanotaeniid fishes in Australia and New Guinea. Mar. Freshwat. Res. 51 (2000) 713-723
62. McKell, M.D., 2003. Phylogeography of speckled dace, Rhinichthys osculus (Teleostei: Cyprinidae), in the intermountain west, USA. MS Thesis, Brigham Young University, Provo, UT.
63. McPhail J.D., and Lindsey C.C. Zoogeography of the freshwater fishes of Cascadia (the Columbia system and rivers north to the Stikine). In: Hocutt C.H., and Wiley E.O. (Eds). The Zoogeography of North American Freshwater Fishes (1986), John Wiley & Sons, New York 615-638
64. Meyer A., Morrissey J.M., and Schartl M. Recurrent origin of a sexually selected trait in Xiphophorus fishes inferred from a molecular phylogeny. Nature 368 (1994) 539-542
65. Miller R.R. Origin and affinities of the freshwater fish fauna of western North America. In: Hubbs C.L. (Ed). Zoogeography (1958), American Association for the Advancement of Science Publication 51, Washington, DC 187-222
66. Minckley W.L., Hendrickson D.A., and Bond C.E. Geography of western North American freshwater fishes: description and relationships to intra-continental tectonism. In: Hocutt C.H., and Wiley E.O. (Eds). The Zoogeography of North American Freshwater Fishes (1986), John Wiley & Sons, New York 519-614
67. Mock K.E., and Miller M.P. Patterns of molecular diversity in naturally occurring and refugial populations of the least chub. Trans. Am. Fish. Soc. 134 (2005) 267-278
68. Mock K.E., Evans R.P., Crawford M., Cardall B.L., Janecke S.U., and Miller M.P. Rangewide molecular structuring in the Utah sucker (Catostomus ardens). Mol. Ecol. 15 (2006) 2223-2238
69. Moyer G.R., Remington R.K., and Turner T.F. Incongruent gene trees, complex evolutionary processes, and the phylogeny of a group of North American minnows (Hybognathus Agassiz 1855). Mol. Phylogenet. Evol. 50 (2009) 514-525
70. Nelson J.S. Fishes of the World. fourth ed. (2006), John Wiley & Sons, Inc., Hoboken, NJ
71. Nelson J.S., Crossman E.J., Espinoza-Pérez H., Findley L.T., Gilbert C.R., Lea R.N., and Williams J.D. Common and Scientific Names of Fishes from the United States, Canada and Mexico. sixth ed. (2004), American Fisheries Society Special Publication 29, Bethesda, MD
72. Neville C., Opdyke N.D., Lindsay E.H., and Johnson N.M. Magnetic stratigraphy of Pliocene deposits of the Glenns Ferry Formation, Idaho, and its implications for North American mammalian biostratigraphy. Am. J. Sci. 279 (1979) 503-526
73. Nielson M., Lohman K., and Sullivan J. Phylogeography of the tailed frog (Ascaphus truei): implications for the biogeography of the Pacific Northwest. Evolution 55 (2001) 147-160
74. Nylander J.A.A. MrModeltest v2.2. Program distributed by the author (2004), Evolutionary Biology Centre, Uppsala University
75. Oakey D.D., Douglas M.E., and Douglas M.R. Small fish in a large landscape: diversification of Rhinichthys osculus (Cyprinidae) in western North America. Copeia 2004 (2004) 207-221
76. Oregon Department of Fish and Wildlife (ODFW), 2005. Oregon native fish status report: volume II - assessment methods and population results.
77. Pederson J.L. The mystery of the pre-Grand Canyon Colorado River - results from the Muddy Creek Formation. GSA Today 18 (2008) 4-10
78. Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 25 (2008) 1253-1256
79. Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
80. Powell J.L. Grand Canyon: Solving Earth's Grandest Puzzle (2005), Pi Press, New York
81. Ptacek M.B., and Breden F. Phylogenetic relationships among the mollies (Poeciliidae: Poecilia: Millienesia group) based on mitochondrial DNA sequences. J. Fish Biol. 53 Suppl. A (1998) 64-81
82. Reheis M.C., and Morrison R.B. High old pluvial lakes of western Nevada. Brigham Young Univ. Geol. Stud. 42 (1997) 459-492
83. Repenning C.A., Weasma T.R., and Scott G.R. The early Pleistocene (latest Blancan-earliest Irvingtonian) Froman Ferry fauna and history of the Glenns Ferry Formation, southwestern Idaho. U.S. Geol. Surv. Bull. 2105 (1995) 1-86
84. Riddle B.R. Molecular biogeography in the pocket mice (Perognathus and Chaetodipus) and grasshopper mice (Onychomys): the late Cenozoic development of a North American aridlands rodent guild. J. Mamm. 76 (1995) 283-301
85. Riddle B.R. The molecular bridge between deep and shallow history in continental biotas. Trends Ecol. Evol. 11 (1996) 207-211
86. Saleeby J. Segmentation of the Laramide Slab - evidence from the southern Sierra Nevada region. Geol. Soc. Am. Bull. 115 (2003) 655-668
87. Sasaki T., Kartavtsev Y.P., Chiba S.N., Uematsu T., Sviridov V.V., and Hanzawa N. Genetic divergence and phylogenetic independence of far eastern species in subfamily Leuciscinae (Pisces: Cyprinidae) inferred from mitochondrial DNA analyses. Genes Genet. Syst. 82 (2007) 329-340
88. Schönhuth S., Doadrio I., Dominguez-Dominguez O., Hillis D.M., and Mayden R.L. Molecular evolution of southern North American Cyprinidae (Actinopterygii), with the description of the new genus Tampichthys from central Mexico. Mol. Phylogenet. Evol. 47 (2008) 729-756
89. Simons A.M., and Mayden R.L. Phylogenetic relationships of the western North American phoxinins (Actinopterygii: Cyprinidae) as inferred from mitochondrial 12s and 16s ribosomal RNA sequences. Mol. Phylogenet. Evol. 9 (1998) 308-329
90. Simons A.M., and Mayden R.L. Phylogenetic relationships of North American cyprinids and assessment of homology of the open posterior myodome. Copeia 1999 (1999) 13-21
91. Simons A.M., Berendzen P.B., and Mayden R.L. Molecular systematics of North American phoxinin genera (Actinopterygii: Cyprinidae) inferred from mitochondrial 12S and 16S ribosomal RNA sequences. Zool. J. Linn. Soc. 139 (2003) 63-80
92. Smith G.R. Distribution and Evolution of the North American Catostomid Fishes of the Subgenus Pantosteus, Genus Catostomus (1966), Miscellaneous Publications, Museum of Zoology, University of Michigan No. 129
93. Smith, G.R., 1975. Fishes of the Pliocene Glenns Ferry Formation, southwest Idaho. University of Michigan Museum of Paleontology, Papers on Paleontology 14, 1-68.
94. Smith G.R. Late Cenozoic freshwater fishes of North America. Annu. Rev. Ecol. Syst. 12 (1981) 163-193
95. Smith G.R., Swirydczuk K., Kimmel K., and Wilkinson B.H. Fish biostratigraphy of late Miocene to Pleistocene sediments of the western Snake River Plain, Idaho. In: Bonnichson B., and Breckenridge R.M. (Eds). Cenozoic Geology of Idaho vol. 26 (1982), Idaho Bureau of Mines and Geology. Bulletin 519-541
96. Smith, G.R., Morgan, N., Gustafson, E., 2000. Fishes of the Mio-Pliocene Ringold Formation, Washington: Pliocene capture of the Snake River by the Columbia River. University of Michigan Papers on Paleontology 32, 1-47.
97. Smith G.R., Dowling T.E., Gobalet K.W., Lugaski T., Shiozawa D.K., and Evans R.P. Biogeography and timing of evolutionary events among Great Basin fishes. In: Hershler R., Madsen D.B., and Currey D.R. (Eds). Great Basin Aquatic Systems History. Smithsonian Contributions to the Earth Sciences Number 33 (2002), Smithsonian Institution Press 175-234
98. Smith, G.R., Cossel, J., 2002. Fishes from the late Miocene Poison Creek and Chalk Hills formations, Owyhee County, Idaho. In: Akersten, W.A., Thompson, M.E., Meldrum, D.J., Rapp, R.A., McDonald, H.G. (Eds.), And Whereas ... Papers on the Vertebrate Paleontology of Idaho Honoring John A. White, vol. 2. Idaho Museum of Natural History Occasional Paper 37, pp. 23-35.
99. Smith, G.R., Dowling, T.E., 2008. Correlating hydrographic events and divergence times of speckled dace (Rhinichthys: Teleostei: Cyprinidae) in the Colorado River drainage. In: Reheis, M.C., Hershler, R., Miller, D.M. (Eds.), Late Cenozoic Drainage History of the Southwestern Great Basin and Lower Colorado River Region: Geologic and Biotic Perspectives. Geological Society of America Special Paper 439, pp. 301-317.
100. Smith S.E., and Bermingham E. The biogeography of lower Mesoamerican freshwater fishes. J. Biogeogr. 32 (2005) 1835-1854
101. Soltis D.E., Gitzendanner M.A., Strenge D.D., and Soltis P.S. Chloroplast DNA intraspecific phylogeography of plants from the Pacific Northwest of North America. Plant. Syst. Evol. 206 (1997) 353-373
102. Spencer, J.E., Smith, G.R., Dowling, T.E., 2008. Middle to late Cenozoic geology, hydrography, and fish evolution in the American southwest. In: Reheis, M.C., Hershler, R., Miller, D.M. (Eds.), Late Cenozoic Drainage History of the Southwestern Great Basin and Lower Colorado River Region: Geologic and Biotic Perspectives. Geological Society of America Special Paper 439, pp. 279-299.
103. Steele C.A., Carstens B.C., Storfer A., and Sullivan J. Testing hypotheses of speciation timing in Dicamptodon copei and Dicamptodon aterrimus (Caudata: Dicamptodontidae). Mol. Phylogenet. Evol. 36 (2005) 90-100
104. Stephens M., and Scheet P. Accounting for decay of linkage disequilibrium in haplotype inference and missing data imputation. Am. J. Hum. Genet. 76 (2005) 449-462
105. Stephens M., Smith N.J., and Donnelly P. A new statistical method for haplotype reconstruction from population data. Am. J. Hum. Genet. 68 (2001) 978-989
106. Stokes W.L. Geology of Utah (1988), Utah Museum of Natural History and Utah Geological and Mineral Survey, Salt Lake City
107. Swartz E.R., Skelton P.H., and Bloomer P. Sea-level changes, river capture and the evolution of populations of the Eastern Cape and fiery redfins (Pseudobarbus afer and Pseudobarbus phlegethon, Cyprinidae) across multiple river systems in South Africa. J. Biogeogr. 34 (2007) 2086-2099
108. Swofford D.L. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4.0b10 (2002), Sinauer, Sunderland, Mass
109. Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
110. Taylor D.W. Evolution of freshwater drainages and mollusks in western North America. In: Smiley C.J. (Ed). Late Cenozoic History of the Pacific Northwest (1985), American Association for the Advancement of Science, Pacific Division, San Fransisco 265-321
111. Taylor, D.W., Bright, R.C., 1987. Drainage history of the Bonneville Basin. In: Kopp, R.S., Cohenour, R.E. (Eds.), Cenozoic Geology of Western Utah. Utah Geological Association Publication No. 16.
112. Taylor D.W., and Smith G.R. Pliocene mollusks and fishes from northeastern California and northwestern Nevada. Contributions from the Museum of Paleontology, University of Michigan 25 (1981) 339-413
113. Unmack P.J. Fish persistence and fluvial geomorphology in central Australia. J. Arid Environ. 49 (2001) 653-669
114. Wallace A.R., Perkins M.E., and Fleck R.J. Late Cenozoic paleogeographic evolution of northeastern Nevada: evidence from the sedimentary basins. Geosphere 4 (2008) 36-74
115. Wheeler H.E., and Cook E.F. Structural and stratigraphic significance of the Snake River capture, Idaho-Oregon. J. Geol. 62 (1954) 425-450
116. Wilke T., and Duncan N. Phylogeographical patterns in the American Pacific Northwest: lessons from the arionid slug Prophysaon coeruleum. Mol. Ecol. 13 (2004) 2303-2315
117. Zemlak T.S., Habit E.M., Walde S.J., Battini M.A., Adams E.D.M., and Ruzzante D.E. Across the southern Andes on fin: glacial refugia, drainage reversals and a secondary contact zone revealed by the phylogeographical signal of Galaxias platei in Patagonia. Mol. Ecol. 17 (2008) 5049-5061