Rapid identification of uropathogenic Escherichia coli of the O25:H4-ST131 clonal lineage using the DiversiLab repetitive sequence-based PCR system

Clinical Microbiology and Infection

Volumn 16, Issue 3, 2010, Pages 232-237

  Lau, S H ^a   Cheesborough, J ^b   Kaufmann, M E ^c   Woodford, N ^c   Dodgson, A R ^a,d   Dodgson, K J ^d   Bolton, E J ^c   Fox, A J ^c   Upton, M ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

^b ROYAL PRESTON HOSPITAL   (United Kingdom)

^c PUBLIC HEALTH ENGLAND   (United Kingdom)

^d MANCHESTER UNIVERSITY NHS FOUNDATION TRUST   (United Kingdom)

Author keywords

DiversiLab; Extended spectrum lactamase; Multilocus sequence typing (MLST); Pulsed field gel electrophoresis (PFGE); Uropathogenic Escherichia coli (UPEC)

Indexed keywords

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; CELL LINEAGE; CONTROLLED STUDY; GENE CLUSTER; MULTILOCUS SEQUENCE TYPING; NONHUMAN; PHENOTYPE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; UROPATHOGENIC ESCHERICHIA COLI;

ESCHERICHIA COLI;

EID: 76749167639     PISSN: 1198743X     EISSN: 14690691     Source Type: Journal    
DOI: 10.1111/j.1469-0691.2009.02733.x     Document Type: Article

References (30)

1. Livermore DM, Canton R, Gniadkowski M. CTX-M: changing the face of ESBLs in Europe. J Antimicrob Chemother 2007, 59:165-174.
2. Woodford N, Ward ME, Kaufmann ME. Community and hospital spread of Escherichia coli producing CTX-M extended-spectrum β-lactamases in the UK. J Antimicrob Chemother 2004, 54:735-743.
3. Nemoy LL, Kotetishvili M, Tigno J. Multilocus sequence typing versus pulsed-field gel electrophoresis for characterization of extended-spectrum β-lactamase-producing Escherichia coli isolates. J Clin Microbiol 2005, 43:1776-1781.
4. Pitout JD, Laupland KB. Extended-spectrum β-lactamase-producing Enterobacteriaceae: an emerging public-health concern. Lancet Infect Dis 2008, 8:159-166.
5. Sader HS, Hollis RJ, Pfaller MA. The use of molecular techniques in the epidemiology and control of infectious diseases. Clin Lab Med 1995, 15:407-431.
6. Nicolas-Chanoine MH, Blanco J, Leflon-Guibout V. Intercontinental emergence of Escherichia coli clone O25:H4-ST131 producing CTX-M-15. J Antimicrob Chemother 2008, 61:273-281.
7. Lau SH, Reddy S, Cheesbrough J. Major uropathogenic Escherichia coli strain isolated in the northwest of England identified by multilocus sequence typing. J Clin Microbiol 2008, 46:1076-1080.
8. Urwin R, Maiden MC. Multi-locus sequence typing: a tool for global epidemiology. Trends Microbiol 2003, 11:479-487.
9. Tartof SY, Solberg OD, Manges AR. Analysis of a uropathogenic Escherichia coli clonal group by multilocus sequence typing. J Clin Microbiol 2005, 43:5860-5864.
10. Maiden MC, Bygraves JA, Feil E. Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci USA 1998, 95:3140-3145.
11. Clermont O, Lavollay M, Vimont S. The CTX-M-15-producing Escherichia coli diffusing clone belongs to a highly virulent B2 phylogenetic subgroup. J Antimicrob Chemother 2008, 61:1024-1028.
12. Yumuk Z, Afacan G, Nicolas-Chanoine MH. Turkey: a further country concerned by community-acquired Escherichia coli clone O25-ST131 producing CTX-M-15. J Antimicrob Chemother 2008, 62:284-288.
13. Cagnacci S, Gualco L, Debbia E. European emergence of ciprofloxacin-resistant Escherichia coli clonal groups O25:H4-ST 131 and O15:K52:H1 causing community-acquired uncomplicated cystitis. J Clin Microbiol 2008, 46:2605-2612.
14. Woodford N, Reddy S, Fagan EJ. Wide geographic spread of diverse acquired AmpC β-lactamases among Escherichia coli and Klebsiella spp. in the UK and Ireland. J Antimicrob Chemother 2007, 59:102-105.
15. Lau SH, Kaufmann ME, Livermore DM. UK epidemic Escherichia coli strains A to E, with CTX-M-15 β-lactamase, all belong to the international O25:H4-ST131 clone. J Antimicrob Chemother 2008, 62:1241-1244.
16. Versalovic J, Koeuth T, Lupski JR. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res 1991, 19:6823-6831.
17. Edelstein M, Pimkin M, Palagin I. Prevalence and molecular epidemiology of CTX-M extended-spectrum β-lactamase-producing Escherichia coli and Klebsiella pneumoniae in Russian hospitals. Antimicrob Agents Chemother 2003, 47:3724-3732.
18. Hahm BK, Maldonado Y, Schreiber E. Subtyping of foodborne and environmental isolates of Escherichia coli by multiplex-PCR, rep-PCR, PFGE, ribotyping and AFLP. J Microbiol Methods 2003, 53:387-399.
19. Healy M, Huong J, Bittner T. Microbial DNA typing by automated repetitive-sequence-based PCR. J Clin Microbiol 2005, 43:199-207.
20. Carretto E, Barbarini D, Farina C. Use of the DiversiLab semiautomated repetitive-sequence-based polymerase chain reaction for epidemiologic analysis on Acinetobacter baumannii isolates in different Italian hospitals. Diagn Microbiol Infect Dis 2008, 60:1-7.
21. Shutt CK, Pounder JI, Page SR. Clinical evaluation of the DiversiLab microbial typing system using repetitive-sequence-based PCR for characterization of Staphylococcus aureus strains. J Clin Microbiol 2005, 43:1187-1192.
22. Ross TL, Merz WG, Farkosh M. Comparison of an automated repetitive sequence-based PCR microbial typing system to pulsed-field gel electrophoresis for analysis of outbreaks of methicillin-resistant Staphylococcus aureus. J Clin Microbiol 2005, 43:5642-5647.
23. Treviño M, Martínez-Lamas L, Romero-Jung PA. Endemic linezolid-resistant Staphylococcus epidermidis in a critical care unit. Eur J Clin Microbiol Infect Dis 2008, [Epub ahead of print]
24. Pounder JI, Shutt CK, Schaecher BJ. Clinical evaluation of repetitive sequence-based polymerase chain reaction using the Diversi-Lab System for strain typing of vancomycin-resistant enterococci. Diagn Microbiol Infect Dis 2006, 54:183-187.
25. Sherer CR, Sprague BM, Campos JM. Characterizing vancomycin-resistant Enterococci in neonatal intensive care. Emerg Infect Dis 2005, 11:1470-1472.
26. Spigaglia P, Mastrantonio P. Evaluation of repetitive element sequence-based PCR as a molecular typing method for Clostridium difficile. J Clin Microbiol 2003, 41:2454-2457.
27. Wise MG, Siragusa GR, Plumblee J. Predicting Salmonella enterica serotypes by repetitive sequence-based PCR. J Microbiol Methods 2009, 76:18-24.
28. Cangelosi GA, Freeman RJ, Lewis KN. Evaluation of a high-throughput repetitive-sequence-based PCR system for DNA fingerprinting of Mycobacterium tuberculosis and Mycobacterium avium complex strains. J Clin Microbiol 2004, 42:2685-2693.
29. Healy M, Reece K, Walton D. Identification to the species level and differentiation between strains of Aspergillus clinical isolates by automated repetitive-sequence-based PCR. J Clin Microbiol 2004, 42:4016-4024.
30. Sneath P, Sokal RR. Numerical taxonomy 1973, 230-234. San Francisco, W.H. Freeman and Company