Large-Scale Analyses of Glycosylation in Cellulases

Genomics, Proteomics and Bioinformatics

Volumn 7, Issue 4, 2009, Pages 194-199

  Zhou, Fengfeng ^a,b   Olman, Victor ^a,b   Xu, Ying ^a,b  

^a Institute of Bioinformatics   (United States)

^b OAK RIDGE NATIONAL LABORATORY   (United States)

Author keywords

cellulase; glycosylation; large scale analyses

Indexed keywords

CARBOHYDRATE BINDING PROTEIN; CELLULASE; GLYCOSIDASE;

ARTICLE; CONTROLLED STUDY; ENZYME ANALYSIS; ENZYME GLYCOSYLATION; ENZYME STABILITY; HYPOCREA JECORINA; MATHEMATICAL COMPUTING; NONHUMAN; PROTEIN DOMAIN;

CELLULASES; CELLULOSE; GLYCOSYLATION; PROTEIN STRUCTURE, TERTIARY;

EID: 76749126493     PISSN: 16720229     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1672-0229(08)60049-2     Document Type: Article

References (28)

1. Lynd L.R., et al. Microbial cellulose utilization: fundamentals and biotechnology. Microbiol. Mol. Biol. Rev. 66 (2002) 506-577
2. Mellerowicz E.J., and Sundberg B. Wood cell walls: biosynthesis, developmental dynamics and their implications for wood properties. Curr. Opin. Plant Biol. 11 (2008) 293-300
3. Eriksson T., et al. Heterogeneity of homologously expressed Hypocrea jecorina (Trichoderma reesei) Cel7B catalytic module. Eur. J. Biochem. 271 (2004) 1266-1276
4. Romero M.D., et al. Cellulase production by Neurospora crassa on wheat straw. Enzyme Microb. Technol. 25 (1999) 244-250
5. Béguin P., and Lemaire M. The cellulosome: an exocellular, multiprotein complex specialized in cellulose degradation. Crit. Rev. Biochem. Mol. Biol. 31 (1996) 201-236
6. Mitchell W.J. Physiology of carbohydrate to solvent conversion by clostridia. Adv. Microb. Physiol. 39 (1998) 31-130
7. Beliën T., et al. Microbial endoxylanases: effective weapons to breach the plant cell-wall barrier or, rather, triggers of plant defense systems?. Mol. Plant Microbe Interact. 19 (2006) 1072-1081
8. Sunna A., and Antranikian G. Xylanolytic enzymes from fungi and bacteria. Crit. Rev. Biotechnol. 17 (1997) 39-67
9. Criquet S. Measurement and characterization of cellulase activity in sclerophyllous forest litter. J. Microbiol. Methods 50 (2002) 165-173
10. Blumer-Schuette S.E., et al. Extremely thermophilic microorganisms for biomass conversion: status and prospects. Curr. Opin. Biotechnol. 19 (2008) 210-217
11. Gilbert H.J. Cellulosomes: microbial nanomachines that display plasticity in quaternary structure. Mol. Microbiol. 63 (2007) 1568-1576
12. Ding S.Y., et al. A biophysical perspective on the cellulosome: new opportunities for biomass conversion. Curr. Opin. Biotechnol. 19 (2008) 218-227
13. Caragea C., et al. Glycosylation site prediction using ensembles of support vector machine classifiers. BMC Bioinformatics 8 (2007) 438
14. Imperiali B., and O'Connor S.E. Effect of N-linked glycosylation on glycopeptide and glycoprotein structure. Curr. Opin. Chem. Biol. 3 (1999) 643-649
15. Bosques C.J., et al. Effects of glycosylation on peptide conformation: a synergistic experimental and computational study. J. Am. Chem. Soc. 126 (2004) 8421-8425
16. Harrison M.J., et al. Modified glycosylation of cellobiohydrolase I from a high cellulase-producing mutant strain of Trichoderma reesei. Eur. J. Biochem. 256 (1998) 119-127
17. Jeoh T., et al. Implications of cellobiohydrolase glycosylation for use in biomass conversion. Biotechnol. Biofuels 1 (2008) 10
18. MacLeod A.M., et al. Streptomyces lividans glycosylates an exoglucanase (Cex) from Cellulomonas fimi. Gene 121 (1992) 143-147
19. Boutet E., et al. UniProtKB/Swiss-Prot. Methods Mol. Biol. 406 (2007) 89-112
20. Mistry J., and Finn R. Pfam: a domain-centric method for analyzing proteins and proteomes. Methods Mol. Biol. 396 (2007) 43-58
21. Wei G., et al. A transcriptomic analysis of superhybrid rice LYP9 and its parents. Proc. Natl. Acad. Sci. USA 106 (2009) 7695-7701
22. Bidargaddi N.P., et al. Hidden Markov models incorporating fuzzy measures and integrals for protein sequence identification and alignment. Genomics Proteomics Bioinformatics 6 (2008) 98-110
23. Zhao X.Q., et al. Comparative analysis of eubacterial DNA polymerase III alpha subunits. Genomics Proteomics Bioinformatics 4 (2006) 203-211
24. Wu C.H., et al. The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res. 34 (2006) D187-D191
25. Mukhopadhyay A., et al. Importance of systems biology in engineering microbes for biofuel production. Curr. Opin. Biotechnol. 19 (2008) 228-234
26. Bairoch A. The ENZYME database in 2000. Nucleic Acids Res. 28 (2000) 304-305
27. Bendtsen J.D., et al. Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340 (2004) 783-795
28. Finn R.D., et al. Pfam: clans, web tools and services. Nucleic Acids Res. 34 (2006) D247-D251