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Volumn 53, Issue 1, 2010, Pages 107-111

Sequencing, annotation and comparative analysis of nine BACs of giant panda (Ailuropoda melanoleuca)

Author keywords

Annotation; Assembly; BAC; Evolution; Giant panda; Sequencing

Indexed keywords

UNTRANSLATED RNA;

EID: 76649144788     PISSN: 16747305     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11427-010-0001-z     Document Type: Article
Times cited : (7)

References (25)
  • 1
    • 33745002215 scopus 로고    scopus 로고
    • Molecular censusing doubles giant panda population estimate in a key nature reserve
    • Zhan X, Li M, Zhang Z, et al. Molecular censusing doubles giant panda population estimate in a key nature reserve. Curr Biol, 2006, 16: R451-452.
    • (2006) Curr Biol , vol.16
    • Zhan, X.1    Li, M.2    Zhang, Z.3
  • 2
    • 33845333347 scopus 로고    scopus 로고
    • Construction of a 7-fold BAC library and cytogenetic mapping of 10 genes in the giant panda (Ailuropoda melanoleuca)
    • Liu W, Zhao Y, Liu Z, et al. Construction of a 7-fold BAC library and cytogenetic mapping of 10 genes in the giant panda (Ailuropoda melanoleuca). BMC Genomics, 2006, 7: 294.
    • (2006) BMC Genomics , vol.7 , pp. 294
    • Liu, W.1    Zhao, Y.2    Liu, Z.3
  • 3
    • 35748986145 scopus 로고    scopus 로고
    • Giant panda BAC library construction and assembly of a 650-kb contig spanning major histocompatibility complex class II region
    • Zeng C J, Pan H J, Gong S B, et al. Giant panda BAC library construction and assembly of a 650-kb contig spanning major histocompatibility complex class II region. BMC Genomics, 2007, 8: 315.
    • (2007) BMC Genomics , vol.8 , pp. 315
    • Zeng, C.J.1    Pan, H.J.2    Gong, S.B.3
  • 4
    • 34250835861 scopus 로고    scopus 로고
    • The complete mitochondrial genome and phylogenetic analysis of the giant panda (Ailuropoda melanoleuca)
    • Peng R, Zeng B, Meng X, et al. The complete mitochondrial genome and phylogenetic analysis of the giant panda (Ailuropoda melanoleuca). Gene, 2007, 397: 76-83.
    • (2007) Gene , vol.397 , pp. 76-83
    • Peng, R.1    Zeng, B.2    Meng, X.3
  • 5
    • 50049087042 scopus 로고    scopus 로고
    • Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary
    • Krause J, Unger T, Nocon A, et al. Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary. BMC Evol Biol, 2008, 8: 220.
    • (2008) BMC Evol Biol , vol.8 , pp. 220
    • Krause, J.1    Unger, T.2    Nocon, A.3
  • 6
    • 34547794162 scopus 로고    scopus 로고
    • Genetic viability and population history of the giant panda, putting an end to the "evolutionary dead end"?
    • Zhang B, Li M, Zhang Z, et al. Genetic viability and population history of the giant panda, putting an end to the "evolutionary dead end"? Mol Biol Evol, 2007, 24: 1801-1810.
    • (2007) Mol Biol Evol , vol.24 , pp. 1801-1810
    • Zhang, B.1    Li, M.2    Zhang, Z.3
  • 7
    • 58349111386 scopus 로고    scopus 로고
    • Giant panda genomic data provide insight into the birth-and-death process of mammalian major histocompatibility complex class II genes
    • Wan Q H, Zeng C J, Ni X W, et al. Giant panda genomic data provide insight into the birth-and-death process of mammalian major histocompatibility complex class II genes. PLoS ONE, 2009, 4: e4147.
    • (2009) PLoS ONE , vol.4
    • Wan, Q.H.1    Zeng, C.J.2    Ni, X.W.3
  • 8
    • 0032529138 scopus 로고    scopus 로고
    • An improved approach for construction of bacterial artificial chromosome libraries
    • Osoegawa K, Woon P Y, Zhao B, et al. An improved approach for construction of bacterial artificial chromosome libraries. Genomics, 1998, 52: 1-8.
    • (1998) Genomics , vol.52 , pp. 1-8
    • Osoegawa, K.1    Woon, P.Y.2    Zhao, B.3
  • 9
    • 0036551777 scopus 로고    scopus 로고
    • Macaque evolution and dispersal in insular south-east Asia
    • Abegg C, Thierry B. Macaque evolution and dispersal in insular south-east Asia. Biol J Linn Soci, 2002, 75: 555-576.
    • (2002) Biol J Linn Soci , vol.75 , pp. 555-576
    • Abegg, C.1    Thierry, B.2
  • 10
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred
    • Ewing B, Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res, 1998, 8: 186-194.
    • (1998) II. Error Probabilities. Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 12
    • 76649095005 scopus 로고    scopus 로고
    • Green P: http://www. phrap. org/. 1993-1996.
    • Green, P.1
  • 13
    • 23844525077 scopus 로고    scopus 로고
    • Repbase Update, a database of eukaryotic repetitive elements
    • Jurka J, Kapitonov V V, Pavlicek A, et al. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res, 2005, 110: 462-467.
    • (2005) Cytogenet Genome Res , vol.110 , pp. 462-467
    • Jurka, J.1    Kapitonov, V.V.2    Pavlicek, A.3
  • 14
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res, 1999, 27: 573-580.
    • (1999) Nucleic Acids Res , vol.27 , pp. 573-580
    • Benson, G.1
  • 15
    • 0030854739 scopus 로고    scopus 로고
    • TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe T M, Eddy S R. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res, 1997, 25: 955-964.
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 16
    • 13444252847 scopus 로고    scopus 로고
    • Rfam: Annotating non-coding RNAs in complete genomes
    • Griffiths-Jones S, Moxon S, Marshall M, et al. Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res, 2005, 33(Database issue): D121-124.
    • (2005) Nucleic Acids Res , vol.33 , Issue.Databaseissue
    • Griffiths-Jones, S.1    Moxon, S.2    Marshall, M.3
  • 18
    • 0034065724 scopus 로고    scopus 로고
    • Ab initio gene finding in Drosophila genomic DNA
    • Salamov A A, Solovyev V V. Ab initio gene finding in Drosophila genomic DNA. Genome Res, 2000, 10: 516-522.
    • (2000) Genome Res , vol.10 , pp. 516-522
    • Salamov, A.A.1    Solovyev, V.V.2
  • 19
    • 2942527473 scopus 로고    scopus 로고
    • Gene prediction with a hidden Markov model and a new intron submodel
    • Stanke M, Waack S. Gene prediction with a hidden Markov model and a new intron submodel. Bioinformatics, 2003, 19Suppl 2: ii215-225.
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 2
    • Stanke, M.1    Waack, S.2
  • 20
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • Bairoch A, Apweiler R: The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res, 2000, 28: 45-48.
    • (2000) Nucleic Acids Res , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 21
    • 0026497991 scopus 로고
    • Cloning, characterization, and expression of a human calcitonin receptor from an ovarian carcinoma cell line
    • Gorn A H, Lin H Y, Yamin M, et al. Cloning, characterization, and expression of a human calcitonin receptor from an ovarian carcinoma cell line. J Clin Invest, 1992, 90: 1726-1735.
    • (1992) J Clin Invest , vol.90 , pp. 1726-1735
    • Gorn, A.H.1    Lin, H.Y.2    Yamin, M.3
  • 22
    • 0032499893 scopus 로고    scopus 로고
    • Polymorphisms of the calcitonin receptor gene are associated with bone mineral density in postmenopausal Italian women
    • Masi L, Becherini L, Colli E, et al. Polymorphisms of the calcitonin receptor gene are associated with bone mineral density in postmenopausal Italian women. Biochem Biophys Res Commun, 1998, 248: 190-195.
    • (1998) Biochem Biophys Res Commun , vol.248 , pp. 190-195
    • Masi, L.1    Becherini, L.2    Colli, E.3
  • 23
    • 33748186965 scopus 로고    scopus 로고
    • Sohlh2 is a germ cell-specific bHLH transcription factor
    • Ballow D J, Xin Y, Choi Y, et al. Sohlh2 is a germ cell-specific bHLH transcription factor. Gene Expr Patterns, 2006, 6: 1014-1018.
    • (2006) Gene Expr Patterns , vol.6 , pp. 1014-1018
    • Ballow, D.J.1    Xin, Y.2    Choi, Y.3
  • 24
    • 0032005993 scopus 로고    scopus 로고
    • CDNA cloning and chromosomal localization of neural adhesion molecule NB-3 in human
    • Kamei Y, Tsutsumi O, Taketani Y, et al. cDNA cloning and chromosomal localization of neural adhesion molecule NB-3 in human. J Neurosci Res, 1998, 51: 275-283.
    • (1998) J Neurosci Res , vol.51 , pp. 275-283
    • Kamei, Y.1    Tsutsumi, O.2    Taketani, Y.3
  • 25
    • 28644447707 scopus 로고    scopus 로고
    • Genome sequence, comparative analysis and haplotype structure of the domestic dog
    • Lindblad-Toh K, Wade C M, Mikkelsen T S, et al. Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature, 2005, 438: 803-819.
    • (2005) Nature , vol.438 , pp. 803-819
    • Lindblad-Toh, K.1    Wade, C.M.2    Mikkelsen, T.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.