-
1
-
-
70349448695
-
Cultivating the uncultured: Limits, advances and future challenges
-
10.1007/s00792-009-0261-3
-
K Alain J Querellou 2009 Cultivating the uncultured: limits, advances and future challenges Extremophiles 13 583 594 10.1007/s00792-009-0261-3
-
(2009)
Extremophiles
, vol.13
, pp. 583-594
-
-
Alain, K.1
Querellou, J.2
-
2
-
-
0034672743
-
Use of substrate responsive-direct viable counts to visualize naphthalene degrading bacteria in a coal tar-contaminated groundwater microbial community
-
DOI 10.1016/S0167-7012(00)00210-4, PII S0167701200002104
-
C Bakermans EL Madsen 2000 Use of substrate responsive-direct viable counts to visualize naphthalene degrading bacteria in a coal tar-contaminated groundwater microbial community J Microbiol Meth 43 81 90 10.1016/S0167-7012(00) 00210-4 1:CAS:528:DC%2BD3cXot1yjurY%3D (Pubitemid 30838400)
-
(2000)
Journal of Microbiological Methods
, vol.43
, Issue.2
, pp. 81-90
-
-
Bakermans, C.1
Madsen, E.L.2
-
3
-
-
40249095175
-
Something from (almost) nothing: The impact of multiple displacement amplification on microbial ecology
-
DOI 10.1038/ismej.2008.10, PII ISMEJ200810
-
EK Binga RS Lasken JD Neufeld 2008 Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology ISME J 2 233 241 10.1038/ismej.2008.10 1:CAS:528:DC%2BD1cXkslOlsrs%3D (Pubitemid 351334272)
-
(2008)
ISME Journal
, vol.2
, Issue.3
, pp. 233-241
-
-
Binga, E.K.1
Lasken, R.S.2
Neufeld, J.D.3
-
4
-
-
4544370545
-
Single-cell microbiology: Tools, technologies, and applications
-
DOI 10.1128/MMBR.68.3.538-559.2004
-
BF Brehm-Stecher EA Johnson 2004 Single-cell microbiology: tools, technologies, and applications Microbiol Mol Biol Rev 68 538 559 10.1128/MMBR.68.3.538-559.2004 1:CAS:528:DC%2BD2cXosVyhtb8%3D (Pubitemid 39238282)
-
(2004)
Microbiology and Molecular Biology Reviews
, vol.68
, Issue.3
, pp. 538-559
-
-
Brehm-Stecher, B.F.1
Johnson, E.A.2
-
5
-
-
0033741146
-
16S rDNA analysis for characterization of denitrifying bacteria isolated from three agricultural soils
-
D Chèneby L Philippot A Hartmann C Hénault JC Germon 2000 16S rDNA analysis for characterization of denitrifying bacteria isolated from three agricultural soils FEMS Microbiol Ecol 34 121 128
-
(2000)
FEMS Microbiol Ecol
, vol.34
, pp. 121-128
-
-
Chèneby, D.1
Philippot, L.2
Hartmann, A.3
Hénault, C.4
Germon, J.C.5
-
6
-
-
66249131497
-
Global sequencing: A review of current molecular data and new methods available to assess microbial diversity
-
10.1264/jsme2.ME08525
-
R Christen 2008 Global sequencing: a review of current molecular data and new methods available to assess microbial diversity Microbes Environ 23 253 268 10.1264/jsme2.ME08525
-
(2008)
Microbes Environ
, vol.23
, pp. 253-268
-
-
Christen, R.1
-
7
-
-
13544277388
-
Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria
-
DOI 10.1128/AEM.71.2.826-834.2005
-
KER Davis SJ Joseph PH Janssen 2005 Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria Appl Environ Microbiol 71 826 834 10.1128/AEM.71.2.826-834.2005 1:CAS:528: DC%2BD2MXhsVKgsbs%3D (Pubitemid 40223569)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.2
, pp. 826-834
-
-
Davis, K.E.R.1
Joseph, S.J.2
Janssen, P.H.3
-
8
-
-
0033758599
-
New techniques for isolation of single prokaryotic cells
-
DOI 10.1016/S0168-6445(00)00045-0, PII S0168644500000450
-
J Fröhlich H König 2000 New techniques for isolation of single prokaryotic cells FEMS Microbiol Rev 24 567 572 10.1016/S0168-6445(00)00045-0 (Pubitemid 30834068)
-
(2000)
FEMS Microbiology Reviews
, vol.24
, Issue.5
, pp. 567-572
-
-
Frohlich, J.1
Konig, H.2
-
9
-
-
27144431645
-
Investigation of microorganisms in bentonite deposits
-
DOI 10.1080/01490450500248788
-
S Fukunaga T Jinyoku Y Iwata M Nakayama T Tsuji N Sakaya K Mogi M Ito 2005 Investigation of microorganisms in bentonite deposits Geomicrobiol J 22 361 370 10.1080/01490450500248788 1:CAS:528:DC%2BD2MXhtVajsLjN (Pubitemid 41490094)
-
(2005)
Geomicrobiology Journal
, vol.22
, Issue.7-8
, pp. 361-370
-
-
Fukunaga, S.1
Jintoku, T.2
Iwata, Y.3
Nakayama, M.4
Tsuji, T.5
Sakaya, N.6
Mogi, K.-I.7
Ito, M.8
-
10
-
-
0017329035
-
Numerically dominant denitrifying bacteria from world soils
-
1:STN:280:DyaE2s3gtVGrsg%3D%3D
-
TN Gamble MR Betlach JM Tiedje 1977 Numerically dominant denitrifying bacteria from world soils Appl Environ Microbiol 33 926 939 1:STN:280: DyaE2s3gtVGrsg%3D%3D
-
(1977)
Appl Environ Microbiol
, vol.33
, pp. 926-939
-
-
Gamble, T.N.1
Betlach, M.R.2
Tiedje, J.M.3
-
12
-
-
38049023927
-
Various players in nitrogen cycle: Diversity and functions of the microorganisms involved in nitrification and denitrification
-
1:CAS:528:DC%2BD1cXjt1Whsb8%3D
-
M Hayatsu K Tago M Saito 2008 Various players in nitrogen cycle: diversity and functions of the microorganisms involved in nitrification and denitrification Soil Sci Plant Nutr 54 33 45 1:CAS:528:DC%2BD1cXjt1Whsb8%3D
-
(2008)
Soil Sci Plant Nutr
, vol.54
, pp. 33-45
-
-
Hayatsu, M.1
Tago, K.2
Saito, M.3
-
13
-
-
33646102691
-
Cultivation of denitrifying bacteria: Optimization of isolation conditions and diversity study
-
10.1128/AEM.72.4.2637-2643.2006 1:CAS:528:DC%2BD28XktFagu70%3D
-
K Heylen B Vanparys L Wittebolle W Verstraete N Boon P De Vos 2006 Cultivation of denitrifying bacteria: optimization of isolation conditions and diversity study Appl Environ Microbiol 72 2637 2643 10.1128/AEM.72.4.2637-2643. 2006 1:CAS:528:DC%2BD28XktFagu70%3D
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 2637-2643
-
-
Heylen, K.1
Vanparys, B.2
Wittebolle, L.3
Verstraete, W.4
Boon, N.5
De Vos, P.6
-
14
-
-
70449510744
-
Microbial populations responsive to denitrification-inducing conditions in rice paddy soil, as revealed by comparative 16S rRNA gene analysis
-
Ishii S, Yamamoto M, Kikuchi M, Oshima K, Hattori M, Otsuka S, Senoo K (2009) Microbial populations responsive to denitrification-inducing conditions in rice paddy soil, as revealed by comparative 16S rRNA gene analysis. Appl Environ Microbiol 75:7070-7078
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7070-7078
-
-
Ishii, S.1
Yamamoto, M.2
Kikuchi, M.3
Oshima, K.4
Hattori, M.5
Otsuka, S.6
Senoo, K.7
-
15
-
-
29244492320
-
An improved method for single cell isolation of prokaryotes from meso-, thermo- and hyperthermophilic environments using micromanipulation
-
DOI 10.1007/s00253-005-0014-x
-
T Ishøy T Kvist P Westermann BK Ahring 2006 An improved method for single cell isolation of prokaryotes from meso-, thermo- and hyperthermophilic environments using micromanipulation Appl Microbiol Biotechnol 69 510 514 10.1007/s00253-005-0014-x (Pubitemid 41830860)
-
(2006)
Applied Microbiology and Biotechnology
, vol.69
, Issue.5
, pp. 510-514
-
-
Ishoy, T.1
Kvist, T.2
Westermann, P.3
Ahring, B.K.4
-
16
-
-
0030765059
-
Ecological implications of an improved direct viable count method for aquatic bacteria
-
1:CAS:528:DyaK2sXmtVKhurw%3D
-
F Joux P Lebaron 1997 Ecological implications of an improved direct viable count method for aquatic bacteria Appl Environ Microbiol 63 3643 3647 1:CAS:528:DyaK2sXmtVKhurw%3D
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 3643-3647
-
-
Joux, F.1
Lebaron, P.2
-
17
-
-
0018423107
-
A tentative direct microscopic method for counting living marine bacteria
-
1:STN:280:DyaE1M3htVOgtg%3D%3D
-
K Kogure U Shimidu N Taga 1979 A tentative direct microscopic method for counting living marine bacteria Can J Microbiol 25 415 420 1:STN:280: DyaE1M3htVOgtg%3D%3D
-
(1979)
Can J Microbiol
, vol.25
, pp. 415-420
-
-
Kogure, K.1
Shimidu, U.2
Taga, N.3
-
18
-
-
33847306942
-
Specific single-cell isolation and genomic amplification of uncultured microorganisms
-
DOI 10.1007/s00253-006-0725-7
-
T Kvist BK Ahring RS Lasken P Westerman 2007 Specific single-cell isolation and genomic amplification of uncultured microorganisms Appl Microbiol Biotechnol 74 926 635 10.1007/s00253-006-0725-7 1:CAS:528:DC%2BD2sXitVKjsr0%3D (Pubitemid 46318663)
-
(2007)
Applied Microbiology and Biotechnology
, vol.74
, Issue.4
, pp. 926-935
-
-
Kvist, T.1
Ahring, B.K.2
Lasken, R.S.3
Westermann, P.4
-
19
-
-
0001857117
-
16S/23S rRNA sequencing
-
E. Stackebrandt M. Goodfellow (eds). Wiley New York
-
Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, New York, pp 115-175
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
20
-
-
27944473961
-
Diversity of denitrifying bacteria isolated from Daejeon sewage treatment plant
-
1:CAS:528:DC%2BD2MXht1Ghs73F
-
YW Lim SA Lee SB Kim HY Yong SH Yeon YK Park DW Jeong JS Park 2005 Diversity of denitrifying bacteria isolated from Daejeon sewage treatment plant J Microbiol 43 383 390 1:CAS:528:DC%2BD2MXht1Ghs73F
-
(2005)
J Microbiol
, vol.43
, pp. 383-390
-
-
Lim, Y.W.1
Lee, S.A.2
Kim, S.B.3
Yong, H.Y.4
Yeon, S.H.5
Park, Y.K.6
Jeong, D.W.7
Park, J.S.8
-
21
-
-
84862072074
-
Simplified protocol for the preparation of genomic DNA from bacterial cultures
-
G.A. Kowalchuk F.J. de Bruijn I.M. Head A.D. Akkermans J.D. van Elsas (eds). 2nd edn. Springer, New York
-
Moore E, Arnscheidt A, Krüger A, Strömpl C, Mau M (2008) Simplified protocol for the preparation of genomic DNA from bacterial cultures. In: Kowalchuk GA, de Bruijn FJ, Head IM, Akkermans AD, van Elsas JD (eds) Molecular microbial ecology manual, 2nd edn. Springer, New York, pp 3-18
-
(2008)
Molecular Microbial Ecology Manual
, pp. 3-18
-
-
Moore, E.1
Arnscheidt, A.2
Krüger, A.3
Strömpl, C.4
Mau, M.5
-
22
-
-
70349917781
-
Isolation and characterization of aerobic thermophilic bacteria from the Savusavu Hot Springs in Fiji
-
10.1264/jsme2.ME08105
-
VV Narayan MA Hatha HW Morgan D Rao 2008 Isolation and characterization of aerobic thermophilic bacteria from the Savusavu Hot Springs in Fiji Microbes Environ 23 350 352 10.1264/jsme2.ME08105
-
(2008)
Microbes Environ
, vol.23
, pp. 350-352
-
-
Narayan, V.V.1
Hatha, M.A.2
Morgan, H.W.3
Rao, D.4
-
23
-
-
4844231422
-
Methane and nitrous oxide emissions from a paddy field with Japanese conventional water management and fertilizer application
-
DOI 10.1029/2003GB002207
-
S Nishimura T Sawamoto H Akiyama S Sudo K Yagi 2004 Methane and nitrous oxide emissions from a paddy field with Japanese conventional water management and fertilizer application Glob Biogeochem Cycle 18 GB2017 10.1029/2003GB002207 (Pubitemid 39320178)
-
(2004)
Global Biogeochemical Cycles
, vol.18
, Issue.2
, pp. 1-10
-
-
Nishimura, S.1
Sawamoto, T.2
Akiyama, H.3
Sudo, S.4
Yagi, K.5
-
24
-
-
0010578742
-
Bacteria sensitive to nutrient broth medium in terrestrial environments
-
H Ohta T Hattori 1980 Bacteria sensitive to nutrient broth medium in terrestrial environments Soil Sci Plant Nutr 26 99 107
-
(1980)
Soil Sci Plant Nutr
, vol.26
, pp. 99-107
-
-
Ohta, H.1
Hattori, T.2
-
25
-
-
68949145167
-
Identification of novel Betaproteobacteria in a succinate-assimilating population in denitrifying rice paddy soil by using stable isotope probing
-
10.1264/jsme2.23.192
-
T Saito S Ishii S Otsuka M Nishiyama K Senoo 2008 Identification of novel Betaproteobacteria in a succinate-assimilating population in denitrifying rice paddy soil by using stable isotope probing Microbes Environ 23 192 200 10.1264/jsme2.23.192
-
(2008)
Microbes Environ
, vol.23
, pp. 192-200
-
-
Saito, T.1
Ishii, S.2
Otsuka, S.3
Nishiyama, M.4
Senoo, K.5
-
27
-
-
0029161178
-
A new fluorescence staining assay for visualizing living microorganisms in soil
-
1:CAS:528:DyaK2MXnvVyitrY%3D
-
T Tsuji Y Kawasaki S Takeshima T Sekiya S Tanaka 1995 A new fluorescence staining assay for visualizing living microorganisms in soil Appl Environ Microbiol 61 3415 3421 1:CAS:528:DyaK2MXnvVyitrY%3D
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 3415-3421
-
-
Tsuji, T.1
Kawasaki, Y.2
Takeshima, S.3
Sekiya, T.4
Tanaka, S.5
-
28
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
DOI 10.1038/nature02340
-
GW Tyson J Chapman P Hugenholtz EE Allen RJ Ram PM Richardson VV Solovyev EM Rubin DS Rokhsar JF Banfield 2004 Community structure and metabolism through reconstruction of microbial genomes from the environment Nature 428 37 43 10.1038/nature02340 1:CAS:528:DC%2BD2cXhslCns70%3D (Pubitemid 38332350)
-
(2004)
Nature
, vol.428
, Issue.6978
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
Solovyev, V.V.7
Rubin, E.M.8
Rokhsar, D.S.9
Banfield, J.F.10
-
29
-
-
4944230766
-
Identification of denitrifying rhizobacteria from bentgrass and bermudagrass golf greens
-
DOI 10.1111/j.1365-2672.2004.02368.x
-
G Wang HD Skipper 2004 Identification of denitrifying rhizobacteria from bentgrass and bermudagrass golf greens J Appl Microbiol 97 827 837 10.1111/j.1365-2672.2004.02368.x 1:CAS:528:DC%2BD2cXptl2msL8%3D (Pubitemid 39331589)
-
(2004)
Journal of Applied Microbiology
, vol.97
, Issue.4
, pp. 827-837
-
-
Wang, G.1
Skipper, H.D.2
-
30
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
DOI 10.1128/AEM.00062-07
-
Q Wang GM Garrity JM Tiedje JR Cole 2007 Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy Appl Environ Microbiol 73 5261 5267 10.1128/AEM.00062-07 1:CAS:528: DC%2BD2sXpsleqtrc%3D (Pubitemid 47326658)
-
(2007)
Applied and Environmental Microbiology
, vol.73
, Issue.16
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
31
-
-
70349929152
-
Direct viable count combined with fluorescence in situ hybridization (DVC-FISH) for specific enumeration of viable Escherichia coli in cow manure
-
10.1264/jsme2.ME08543
-
S Wu D Ueno K Inoue T Someya 2009 Direct viable count combined with fluorescence in situ hybridization (DVC-FISH) for specific enumeration of viable Escherichia coli in cow manure Microbes Environ 24 33 38 10.1264/jsme2.ME08543
-
(2009)
Microbes Environ
, vol.24
, pp. 33-38
-
-
Wu, S.1
Ueno, D.2
Inoue, K.3
Someya, T.4
-
32
-
-
70349127272
-
Temporal shifts in diversity and quantity of nirS and nirK in a rice paddy field soil
-
10.1016/j.soilbio.2009.07.012 1:CAS:528:DC%2BD1MXhtFKnsrvK
-
M Yoshida S Ishii S Otsuka K Senoo 2009 Temporal shifts in diversity and quantity of nirS and nirK in a rice paddy field soil Soil Biol Biochem 41 2044 2051 10.1016/j.soilbio.2009.07.012 1:CAS:528:DC%2BD1MXhtFKnsrvK
-
(2009)
Soil Biol Biochem
, vol.41
, pp. 2044-2051
-
-
Yoshida, M.1
Ishii, S.2
Otsuka, S.3
Senoo, K.4
|