Methanotrophic communities in brazilian ferralsols from naturally forested, afforested, and agricultural Sites

Applied and Environmental Microbiology

Volumn 76, Issue 4, 2010, Pages 1307-1310

  Dörr, Nicole ^a   Glaser, Bruno ^a   Kolb, Steffen ^a  

^a UNIVERSITY OF BAYREUTH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

AGRICULTURAL SITES; ATMOSPHERIC METHANES; FARMLAND SOILS; METHANOTROPHS;

ATMOSPHERIC CHEMISTRY; FARMS; METHANE;

SOILS;

METHANE;

AGRICULTURAL LAND; FERRALSOL; FOREST SOIL; METHANE; METHANOGENIC BACTERIUM; MICROBIAL COMMUNITY; SOIL BIOTA;

ALPHAPROTEOBACTERIA; ARTICLE; ATMOSPHERE; BRAZIL; CLASSIFICATION; CROP; ECOSYSTEM; GAMMAPROTEOBACTERIA; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; PHYLOGENY; SPECIES DIFFERENCE; TREE;

ALPHAPROTEOBACTERIA; ATMOSPHERE; BRAZIL; CROPS, AGRICULTURAL; ECOSYSTEM; GAMMAPROTEOBACTERIA; METHANE; PHYLOGENY; SOIL MICROBIOLOGY; SPECIES SPECIFICITY; TREES;

BRAZIL;

EID: 76649107903     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02282-09     Document Type: Article

References (29)

1. Reference deleted.
2. Baani, M., and W. Liesack. 2008. Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2. Proc. Natl. Acad. Sci. U. S. A. 105:10203-10208.
3. 2O, and NO). Microbiol. Rev. 60:609-640.
4. Dalai, R. C., and D. E. Allen. 2008. Greenhouse gas fluxes from natural ecosystems. Aust. J. Bot. 56:369-407.
5. Dedysh, S. N., S. E. Belova, P. L. E. Bodelier, K. V. Smirnova, V. N. Khmelenina, A. Chidthaisong, Y. A. Trotsenko, W. Liesack, and P. F. Dunfield. 2007. Methylocystis heyeri sp. nov., a novel type II methanotrophic bacterium possessing 'signature' fatty acids of type I methanotrophs. Int. J. Syst. Evol. Microbiol. 57:472-1179
6. Degelmann, D. M., S. Kolb, and W. Borken. 2009. Methane oxidation kinetics differ in European beech and Norway spruce soils. Eur. J. Soil Sci. 60:499-506.
7. Dunfield, P. F., and R. Conrad. 2000. Starvation alters the apparent halfsaturation constant for methane in the type II methanotroph Methylcystis strain LR1. Appl. Environ. Microbiol. 66:4136-4138.
8. Felsenstein, J. 1997. An alternating least squares approach to inferring phytogenies from pairwise distances. Syst. Biol. 46:101-111.
9. Food and Agriculture Organization of the United Nations. 1998. World reference base for soil resources. International Soil Reference and Information Centre, Rome, Italy.
10. 4-oxidizer populations across sites? Soil Biol. Biochem. 29:13-21.
11. Hanson, R. S., and T. E. Hanson. 1996. Methanotrophic bacteria. Microbiol. Rev. 60:439-472.
12. Holmes, A. J., A. Costello, M. E. Lid strom, and J. C. Murrell. 1995. Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionarily related. FEMS Microbiol. Lett. 132:203-208.
13. Keller, M., and W. A. Reiners. 1994. Soil atmosphere exchange of nitrousoxide, nitric-oxide, and methane under secondary succession of pasture to forest in the Atlantic lowlands of Costa Rica. Global Biogeochem. Cycles 8:399-409.
14. Kniet, C., and P. F. Dunfield. 2005. Response and adaptation of different methanotrophic bacteria to low methane mixing ratios. Environ. Microbiol. 7:1307-1317.
15. Knief, C., S. Kolb, P. L. E. Bodelier, A. Lipski, and P. F. Dunfield. 2006. The active methanotrophic community in hydromorphic soils changes in response to changing methane concentration. Environ. Microbiol. 8:321-333.
16. Knief, C., S. Vanitchung, N. W. Harvey, R. Conrad, P. F. Dunfield, and A. Chidthaisong. 2005. Diversity of methanotrophic bacteria in tropical upland soils under different land uses. Appl. Environ. Microbiol. 71:3826-3831.
17. Kolb, S. 2009. The quest for atmospheric methane oxidizers in forest soils. Environ. Microbiol. Rep. 1(5):336-346.
18. Kolb, S., C. Knief, P. F. Dunfield, and R. Conrad. 2005. Abundance and activity of uncultured methanotrophic bacteria involved in the consumption of atmospheric methane in two forest soils. Environ. Microbiol. 7:1150-1161.
19. 18. Ludwig, W., O. Strunk, R. Westram, L. Richter, H. Meier, Yadhukumar, A. Buchner, T. Lai, S. Steppi, G. Jobb, W. Forster, I. Brettske, S. Gerber, A. W. Ginhart, O. Gross, S. Grumann, S. Hermann, R. Jost, A. Konig, T. Liss, R. Lussmann, M. May, B. Nonhoff, B. Reichel, R. Strehlow, A. Stamatakis, N. Stuckmann, A. Vilbig, M. Lenke, T. Ludwig, A. Bode, and K. H. Schleifer. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371. (Pubitemid 38854737)
20. Maxfield, P. J., E. R. C. Hornibrook, and R. P. Evershed. 2008. Acute impact of agriculture on high-affinity methanotrophic bacterial populations. Environ. Microbiol. 10:1917-1924.
21. 4 uptake by altering biomass and activity but not composition of high-affinity methanotrophs. Global Change Biol. 14:2405-2419.
22. Mohanty, S. R., P. L. E. Bodelier, V. Floris, and R. Conrad. 2006. Differential effects of nitrogenous fertilizers on methane-consuming microbes in rice field and forest soils. Appl. Environ. Microbiol. 72:1346-1354.
23. Ricke, P., S. Kolb, and G. Braker. 2005. Application of a newly developed ARB software-integrated tool for in silico terminal restriction fragment length polymorphism analysis reveals the dominance of a novelpmoA cluster in a forest soil. Appl. Environ. Microbiol. 71:1671-1673.
24. Reference deleted.
25. Singh, B. K., K. R. Tate, G. Kolipaka, C. B. Hedley, C. A. Macdonald, P. Millard, and J. C. Murrell. 2007. Effect of afforestation and reforestation of pastures on the activity and population dynamics of methanotrophic bacteria. Appl. Environ. Microbiol. 73:5153-5161.
26. Smith, K. A., K. E. Dobbie, B. C. Ball, L. R. Bakken, B. K. Sitaula, S. Hansen, R. Brumme, W. Borken, S. Christensen, A. Prieme, D. Fowler, J. A. Macdonald, U. Skiba, L. Klemedtsson, A. Kasimir-Klemedtsson, A. Degorska, and P. Orlanski. 2000. Oxidation of atmospheric methane in Northern European soils, comparison with other ecosystems, and uncertainties in the global terrestrial sink. Global Change Biol. 6:791-803.
27. Tate, K. R., D. J. Ross, S. Saggar, C. B. Hedley, J. Dando, B. K. Singh, and S. M. Lambie. 2007. Methane uptake in soils from Pinus radiata plantations, a reverting shrubland and adjacent pastures: effects of land-use change, and soil texture, water and mineral nitrogen. Soil Biol. Biochem. 39:1437-1449.
28. Verchot, L. V., E. A. Davidson, J. H. Cattanio, and I. L. Ackerman. 2000. Land-use change and biogeochemical controls of methane fluxes in soils of eastern Amazonia. Ecosystems 3:41-56.
29. Willison, T. W., K. W. T. Goulding, and D. S. Powlson. 1995. Effect of land-use change and methane mixing-ratio on methane uptake from United Kingdom soil. Global Change Biol. 1: 209-212.