Detection of protein-protein interactions in plants using the transrepressive activity of the EAR motif repression domain

Plant Journal

Volumn 61, Issue 4, 2010, Pages 570-578

  Matsui, Kyoko ^a   Ohme Takagi, Masaru ^a  

^a NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

EAR motif; Protein protein interaction; Repressor; SRDX; Transcription factor; Transrepression; WD40

Indexed keywords

ARABIDOPSIS PROTEIN; PLANT RNA; TRANSCRIPTION FACTOR; TTG1 PROTEIN, ARABIDOPSIS;

ARABIDOPSIS; ARTICLE; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; METHODOLOGY; MUTATION; PROTEIN ANALYSIS; PROTEIN MOTIF; TRANSCRIPTION INITIATION; TRANSGENIC PLANT;

AMINO ACID MOTIFS; ARABIDOPSIS; ARABIDOPSIS PROTEINS; GENE EXPRESSION REGULATION, PLANT; MUTATION; PLANTS, GENETICALLY MODIFIED; PROTEIN INTERACTION MAPPING; RNA, PLANT; TRANSCRIPTION FACTORS; TRANSCRIPTIONAL ACTIVATION;

ARABIDOPSIS;

EID: 76449116225     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2009.04081.x     Document Type: Article

References (34)

1. Ananieva EA, Gillaspy GE, Ely A, Burnette RN, Erickson FL. Interaction of the WD40 domain of a myoinositol polyphosphate 5-phosphatase with snRK1 links inositol, sugar and stress signaling. Plant Physiol. 2008, 148:1868-1882.
2. Baudry A, Heim MA, Dubreucq B, Caboche M, Weisshaar B, Lepiniec L. TT2, TT8 and TTG1 synergistically specify the expression of BANYULS and proanthocyanidin biosynthesis in Arabidopsis thaliana. Plant J. 2004, 39:366-380.
3. Boysen RI, Jong AJ, Wilce JA, King GF, Hearn MT. Role of interfacial hydrophobic residues in the stabilization of the leucine zipper structures of the transcription factors c-fos and c-jun. J. Biol. Chem. 2002, 277:23-31.
4. Bracha-Drori K, Shichrur K, Katz A, Oliva M, Angelovici R, Yalovsky S, Ohad N. Detection of protein-protein interactions in plants using bimolecular fluorescence complementation. Plant J. 2004, 40:419-427.
5. Calderon-Villalobos LI, Kuhnle C, Dohmann EM, Li H, Bevan M, Schwechheimer C. The evolutionarily conserved TOUGH protein is required for proper development of Arabidopsis thaliana. Plant Cell 2005, 17:2473-2485.
6. Datta S, Johansson H, Hettiarachchi C, Irigoyen ML, Desai M, Rubio V, Holm M. LZF1/SALT TOLERANCE HOMOLOG3, an Arabidopsis B-box protein involved in light-dependent development and gene expression, undergoes COP1-mediated ubiquitination. Plant Cell 2008, 20:2324-2338.
7. Gonzalez A, Mendenhall J, Huo Y, Lloyd A. TTG1 complex MYBs, MYB5 and TT2, control outer seed coat differentiation. Dev. Biol. 2009, 325:412-421.
8. Hiratsu K, Ohta M, Matsui K, Ohme-Takagi M. The SUPERMAN protein is an active repressor whose carboxy-terminal repression domain is required for the development of normal flowers. FEBS Lett. 2002, 514:351-354.
9. Hiratsu K, Matsui K, Koyama T, Ohme-Takagi M. Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis. Plant J. 2003, 34:733-739.
10. Hu CD, Kerppola TK. Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis. Nat. Biotechnol. 2003, 21:539-545.
11. Koyama T, Furutani M, Tasaka M, Ohme-Takagi M. TCP transcription factors control the morphology of shoot lateral organs via negative regulation of the expression of boundary-specific genes in Arabidopsis. Plant Cell 2007, 19:473-484.
12. Kuroda K, Kato M, Mima J, Ueda M. Systems for the detection and analysis of protein-protein interactions. Appl. Microbiol. Biotechnol. 2006, 71:127-136.
13. Lalonde S, Ehrhardt DW, Loque D, Chen J, Rhee SY, Frommer WB. Molecular and cellular approaches for the detection of protein-protein interactions: latest techniques and current limitations. Plant J. 2008, 53:610-635.
14. Markel H, Chandler J, Werr W. Translational fusions with the engrailed repressor domain efficiently convert plant transcription factors into dominant-negative functions. Nucleic Acids Res. 2002, 30:4709-4719.
15. Matsui K, Tanaka H, Ohme-Takagi M. Suppression of the biosynthesis of proanthocyanidin in Arabidopsis by a chimeric PAP1 repressor. Plant Biotechnol. J. 2004, 2:487-493.
16. Matsui K, Umemura Y, Ohme-Takagi M. AtMYBL2, a protein with a single MYB domain, acts as a negative regulator of anthocyanin biosynthesis in Arabidopsis. Plant J. 2008, 55:954-967.
17. von Mering C, Krause R, Snel B, Cornell M, Oliver SG, Fields S, Bork P. Comparative assessment of large-scale data sets of protein-protein interactions. Nature 2002, 417:399-403.
18. Miernyk JA, Thelen JJ. Biochemical approaches for discovering protein-protein interactions. Plant J. 2008, 53:597-609.
19. Mitsuda N, Iwase A, Yamamoto H, Yoshida M, Seki M, Shinozaki K, Ohme-Takagi M. NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis. Plant Cell 2007, 19:270-280.
20. Nakagawa T, Suzuki T, Murata S. Improved gateway binary vectors: high-performance vectors for creation of fusion constructs in transgenic analysis of plants. Biosci. Biotechnol. Biochem. 2007, 71:2095-2100.
21. Ohta M, Matsui K, Hiratsu K, Shinshi H, Ohme-Takagi M. Repression domains of class II ERF transcriptional repressors share an essential motif for active repression. Plant Cell 2001, 13:1959-1968.
22. Papworth M, Kolasinska P, Minczuk M. Designer zinc-finger proteins and their applications. Gene 2006, 366:27-38.
23. Park SH, Reyes JA, Gilbert DR, Kim JW, Kim S. Prediction of protein-protein interaction types using association rule based classification. BMC Bioinformatics 2009, 10:36.
24. Ramirez-Carrozzi VR, Kerppola TK. Control of the orientation of fos-Jun binding and the transcriptional cooperativity of fos-Jun-NFAT1 complexes. J. Biol. Chem. 2001, 276:21797-21808.
25. Shafaatian R, Payton MA, Reid JD. PWP2, a member of the WD-repeat family of proteins, is an essential Saccharomyces cerevisiae gene involved in cell separation. Mol. Gen. Genet. 1996, 252:101-114.
26. Szemenyei H, Hannon M, Long JA. TOPLESS mediates auxin-dependent transcriptional repression during Arabidopsis embryogenesis. Science 2008, 319:1384-1386.
27. Tiwari SB, Hagen G, Guilfoyle TJ. Aux/IAA proteins contain a potent transcriptional repression domain. Plant Cell 2004, 16:533-543.
28. Walker AR, Davison PA, Bolognesi-Winfield AC, James CM, Srinivasan N, Blundell TL, Esch JJ, Marks MD, Gray JC. The TRANSPARENT TESTA GLABRA1 locus, which regulates trichome differentiation and anthocyanin biosynthesis in Arabidopsis, encodes a WD40 repeat protein. Plant Cell 1999, 11:1337-1350.
29. Wu J, Vallenius T, Ovaska K, Westermarck J, Makela TP, Hautaniemi S. Integrated network analysis platform for protein-protein interactions. Nat. Methods 2009, 6:75-77.
30. Wunderlich M, Werr W, Schoffl F. Generation of dominant-negative effects on the heat shock response in Arabidopsis thaliana by transgenic expression of a chimaeric HSF1 protein fusion construct. Plant J. 2003, 35:442-451.
31. Yang Y, Fanning L, Jack T. The K domain mediates heterodimerization of the Arabidopsis floral organ identity proteins, APETALA3 and PISTILLATA. Plant J. 2003, 33:47-59.
32. Zhang F, Gonzalez A, Zhao M, Payne CT, Lloyd A. A network of redundant bHLH proteins functions in all TTG1-dependent pathways of Arabidopsis. Development 2003, 130:4859-4869.
33. Zhao M, Morohashi K, Hatlestad G, Grotewold E, Lloyd A. The TTG1-bHLH-MYB complex controls trichome cell fate and patterning through direct targeting of regulatory loci. Development 2008, 135:1991-1999.
34. Zhu D, Maier A, Lee JH, Laubinger S, Saijo Y, Wang H, Qu LJ, Hoecker U, Deng XW. Biochemical characterization of Arabidopsis complexes containing CONSTITUTIVELY PHOTOMORPHOGENIC1 and SUPPRESSOR OF PHYA proteins in light control of plant development. Plant Cell 2008, 20:2307-2323.