Taxonomic position of Eunapius subterraneus (Porifera, Spongillidae) inferred from molecular data - A revised classification needed?

Molecular Phylogenetics and Evolution

Volumn 54, Issue 3, 2010, Pages 1021-1027

  Harcet, Matija ^a   Bilandžija, Helena ^a,b   Bruvo Madarić, Branka ^a   Ćetković, Helena ^a  

^a RUDER BO KOVI INSTITUTE   (Croatia)

^b Croatian Biospeleological Society   (Croatia)

Author keywords

18S rDNA; ITS2 and COI; Porifera; Spongillidae; Stygobitic; Subterranean

Indexed keywords

MITOCHONDRIAL DNA; RIBOSOMAL SPACER DNA;

ANIMAL; ARTICLE; CLASSIFICATION; DNA SEQUENCE; GENETIC MARKER; GENETICS; MOLECULAR EVOLUTION; PHYLOGENY; SEQUENCE ALIGNMENT; SPONGE (PORIFERA);

ANIMALS; DNA, MITOCHONDRIAL; DNA, RIBOSOMAL SPACER; EVOLUTION, MOLECULAR; GENETIC MARKERS; PHYLOGENY; PORIFERA; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

PORIFERA; SPONGILLIDAE;

EID: 76449108418     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2009.12.019     Document Type: Article

References (29)

1. Addis J.S., and Peterson K.J. Phylogenetic relationships of freshwater sponges (Porifera, Spongillina) inferred from analyses of 18S rDNA, COI mtDNA, and ITS2 rDNA sequences. Zool. Scr. 34 (2005) 549-557
2. Bahun S. Geološka osnova hidrogeoloških odnosa krškog područja izmed{combining short stroke overlay}u Slunja i Vrbovskog. Geol. Vjesn. 21 (1968) 19-82
3. Bilandžija H., Bedek J., Jalžić B., and Gottstein S. The morphological variability, distribution patterns and endangerment in the Ogulin cave sponge Eunapius subterraneus Sket & Velikonja, 1984 (Demospongiae, Spongillidae). Nat. Croat. 16 (2007) 1-17
4. Blanquer A., and Uriz M.J. Cryptic speciation in marine sponges evidenced by mitochondrial and nuclear genes: a phylogenetic approach. Mol. Phylogenet. Evol. 45 (2007) 392-397
5. Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 17 (2000) 540-552
6. Folmer O., Black M., Hoeh W., Lutz R., and Vrijenhoek R. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 3 (1994) 294-299
7. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids. Symp. Ser. 41 (1999) 95-98
8. Huelsenbeck J.P., and Ronquist F. MRBAYES: bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
9. Itskovich V., Belikov S., Efremova S., Masuda Y., Perez T., Alivon E., Borchiellini C., and Boury-Esnault N. Phylogenetic relationships between freshwater and marine Haplosclerida (Porifera, Demospongiae) based on the full length 18S rRNA and partial COXI gene sequences. In: Custodio M.R., Lobo-Hajdu G., Hajdu E., and Muricy G. (Eds). Porifera Research: Biodiversity, Innovation and Sustainability (2007), Museu Nacional, Rio de Janeiro 383-391
10. Itskovich V., Gontcharov A., Masuda Y., Nohno T., Belikov S., Efremova S., Meixner M., and Janussen D. Ribosomal ITS sequences allow resolution of freshwater sponge phylogeny with alignments guided by secondary structure prediction. J. Mol. Evol. 67 (2008) 608-620
11. Manconi R., and Pronzato R. Suborder Spongillina subord. nov.: freshwater sponges. In: Hooper J.N.A., and Soest R.W.M.V. (Eds). Systema Porifera (2002), Kluwer Academic/Plenum Publishers, New York, Boston, Dordrecht, London, Moscow 921-1019
12. Matoničkin I. Limnofauna beskralješnjaka. Biosistematika 9 (1988) 20
13. Meixner M.J., Luter C., Eckert C., Itskovich V., Janussen D., von Rintelen T., Bohne A.V., Meixner J.M., and Hess W.R. Phylogenetic analysis of freshwater sponges provide evidence for endemism and radiation in ancient lakes. Mol. Phylogenet. Evol. 45 (2007) 875-886
14. Pavelić D. The south-western boundary of central Paratethys. Geol. Croat. 55 (2002) 83-92
15. Penney J.T., and Racek A.A. Comprehensive revision of a worldwide collection of freshwater sponges (Porifera, Spongillidae). US Nat. Hist. Bull. 272 (1968) 1-184
16. Peterson K.J., and Addis J.S. Clypeatula cooperensis gen. n., sp. n., a new freshwater sponge (Porifera, Spongillidae) from the rocky mountains of Montana, USA. Zool. Scr. 29 (2000) 265-274
17. Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
18. Redmond N.E., van Soest R.W.M., Kelly M., Raleigh J., Travers S.A.A., and McCormack G.P. Reassessment of the classification of the Order Haplosclerida (Class Demospongiae, Phylum Porifera) using 18S rRNA gene sequence data. Mol. Phylogenet. Evol. 43 (2007) 344-352
19. Sket, B., 1986. Evaluation of some taxonomically, zoogeographically, or ecologically interesting finds in the hypogean waters of Yugoslavia (in the last decades). Comunicacions, 9 Congreso Internacional de Espeleologia, pp. 126-8.
20. Sket B. The nature of biodiversity in hypogean waters and how it is endangered. Biodiversity and Conservation 8 (1999) 1319-1338
21. Sket, B., Velikonja, M., 1984. Prethodni izvještaj o nalazima slatkovodnih spužvi (Porifera, Spongillidae) u spiljama Jugoslavije. Deveti Jugoslavenski speleološki kongres, pp. 553-7.
22. Sket B., and Velikonja M. Troglobitic freshwater sponges (Porifera, Spongillidae) found in Yugoslavia. Stygologia 2 (1986) 254-266
23. Solé-Cava A.M., and Wörheide G. The perils and merits (or the good, the bad and the ugly) of DNA barcoding of sponges - a controversial discussion. In: Custodio M.R., Lobo-Hajdu G., Hajdu E., and Muricy G. (Eds). Porifera Research: Biodiversity, Innovation and Sustainability (2007), Museu Nacional, Rio de Janeiro 603-612
24. Surić M. Submerged karst - dead or alive? Examples from the eastern Adriatic coast (Croatia). Geoadria 10 (2005) 5-19
25. Swofford, D.L., 2000. PAUP: phylogenetic analysis using parsimony (* and other methods), version 4.0. Sinauer, Sunderland, Massachusetts.
26. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
27. Tvrtković N., Gottstein S., Hamidović D., Jalžić B., Kletečki E., Kovačić M., Tvrtković R.L., Ozimec R., Petricioli D., Sket B., Velkovrh F., and Zupančić P. Podzemne životinje. Crveni popis ugroženih biljaka i životinja Hrvatske (2004), Državni zavod za zaštitu prirode, Zagreb pp. 75-78
28. Vacelet J. Porifera. In: Juberthie C., and Decu V. (Eds). Encyclopaedia Biospeologica (1994), Société de Biospéologie, Moulis, Bucarest 35-38
29. Wörheide G., Nichols S.A., and Goldberg J. Intragenomic variation of the rDNA internal transcribed spacers in sponges (Phylum Porifera): implications for phylogenetic studies. Mol. Phylogenet. Evol. 33 (2004) 816-830