Identification and functional characterization of a gene for the methanol:N,N'-dimethyl-4-nitrosoaniline oxidoreductase from Mycobacterium sp. strain JC1 (DSM 3803)

Microbiology

Volumn 156, Issue 2, 2010, Pages 463-471

  Park, Hyuk ^a   Lee, Hyunil ^b,c   Ro, Young T ^b   Kim, Young M ^a  

^a Yonsei University   (South Korea)

^b Konkuk University School of Medicine   (South Korea)

^c Samsung Medical Center   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL; CARBON; FORMALDEHYDE; MESSENGER RNA; METHANOL; N,N' DIMETHYL 4 NITROSOANILINE OXIDOREDUCTASE; OXIDOREDUCTASE; UNCLASSIFIED DRUG;

ALCOHOL OXIDATION; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; CARBON SOURCE; CELL GROWTH; CONTROLLED STUDY; ENERGY RESOURCE; ENZYME PURIFICATION; GENE FUNCTION; GENE IDENTIFICATION; GENE LOCATION; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; MOLECULAR CLONING; MYCOBACTERIUM; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PROMOTER REGION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; START CODON; TRANSCRIPTION INITIATION;

ALCOHOL OXIDOREDUCTASES; BACTERIAL PROTEINS; BLOTTING, NORTHERN; CARBON; CATALYSIS; CLONING, MOLECULAR; ENERGY METABOLISM; ESCHERICHIA COLI; GENE EXPRESSION REGULATION, BACTERIAL; GENE EXPRESSION REGULATION, ENZYMOLOGIC; GENETIC COMPLEMENTATION TEST; GLUCOSE; METHANOL; MOLECULAR SEQUENCE DATA; MUTATION; MYCOBACTERIUM; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, BACTERIAL; RNA, MESSENGER; TRANSCRIPTION, GENETIC;

MYCOBACTERIUM SP.;

EID: 76449089981     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.034124-0     Document Type: Article

References (49)

1. Anthony, C. (2000). Methanol dehydrogenase, a PQQ-containing quinoprotein dehydrogenase. Subcell Biochem 35, 73-117.
2. Anthony, C. & Zatman, L. J. (1967). The microbial oxidation of methanol. Purification and properties of the alcohol dehydrogenase of Pseudomonas sp. M27. Biochem J 104, 953-959.
3. Arfman, N., Watling, E. M., Clement, W., van Oosterwijk, R. J., de Vries, G. E., Harder, W., Attwood, M. M. & Dijkhuizen, L. (1989). Methanol metabolism in thermotolerant methylotrophic Bacillus strains involving a novel catabolic NAD-dependent methanol dehydrogenase as a key enzyme. Arch Microbiol 152, 280-288.
4. Arfman, N., Hektor, H. J., Bystrykh, L. V., Govorukhina, N. I., Dijkhuizen, L. & Frank, J. (1997). Properties of an NAD(H)-containing methanol dehydrogenase and its activator protein from Bacillus methanolicus. Eur J Biochem 244, 426-433.
5. Arps, P. J., Speer, B. S., Kim, Y. M. & Lidstrom, M. E. (1995). The mxaAKL genes of Methylobacter albus BG8. Microbiology 141, 2995-3004.
6. Bradford, M. M. (1976). A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72, 248-254.
7. Brautaset, T., Jakobsen, Ø. M., Flickinger, M. C., Valla, S. & Ellingsen, T. E. (2004). Plasmid-dependent methylotrophy in thermotolerant Bacillus methanolicus. J Bacteriol 186, 1229-1238.
8. Bystrykh, L. V., Govorukhina, N. I., van Ophem, P. W., Hektor, H. J., Dijkhuizen, L. & Duine, J. A. (1993a). Formaldehyde dismutase activities in gram-positive bacteria oxidizing methanol. J Gen Microbiol 139, 1979-1985.
9. Bystrykh, L. V., Vonck, J., Vanbruggen, E. F. J., Vanbeeumen, J., Samyn, B., Govorukhina, N. I., Arfman, N., Duine, J. A. & Dijkhuizen, L. (1993b). Electron microscopic analysis and structural characterization of novel NADP(H)-containing methanol : N,N′-dimethyl-4-nitrosoaniline oxidoreductases from the Gram-positive methylotrophic bacteria Amycolatopsis methanolica and Mycobacterium gastri MB19. J Bacteriol 175, 1814-1822.
10. Cho, J. W., Yim, H. S. & Kim, Y. M. (1985). Acinetobacter isolate growing with carbon monoxide. Kor J Microbiol 23, 1-8.
11. Daussmann, T., Aivasidis, A. & Wandrey, C. (1997). Purification and characterization of an alcohol: N,N′-dimethyl-4-nitrosoaniline oxidoreductase from the methanogen Methanosarcina barkeri DSM 804 strain Fusaro. Eur J Biochem 248, 889-896.
12. de Vries, G. E., Harms, N., Maurer, K., Papendrecht, A. & Stouthamer, A. H. (1988). Physiological regulation of Paracoccus denitrificans methanol dehydrogenase synthesis and activity. J Bacteriol 170, 3731-3737.
13. de Vries, G. E., Arfman, N., Terpstra, P. & Dijkhuizen, L. (1992). Cloning, expression, and squence analysis of the Bacillus methanolicus C1 methanol dehydrogenase gene. J Bacteriol 174, 5346-5353.
14. Dower, W. J., Miller, J. F. & Ragsdale, C. W. (1988). High efficiency transformation of E. coli by high voltage electroporation. Nucleic Acids Res 16, 6127-6145.
15. Duine, J. A., Frank, J. & Berkhout, M. P. J. (1984). NAD-dependent, PQQ-containing methanol dehydrogenase: a bacterial dehydrogenase in a multienzyme complex. FEBS Lett 168, 217-221.
16. Edman, P. & Begg, G. (1967). A protein sequenator. Eur J Biochem 1, 80-91.
17. Goldberg, J. B. & Ohman, D. E. (1984). Cloning and expression in Pseudomonas aeruginosa of a gene involved in the production of alginate. J Bacteriol 158, 1115-1121.
18. Gomez, M. & Smith, I. (2000). Determinants of mycobacterial gene expression. In Molecular Genetics of Mycobacteria, pp. 111-129. Edited by G. F. Hatfull & J. W. R. Jacobs. Washington, DC: American Society for Microbiology.
19. Harms, N., de Vries, G. E., Maurer, K., Hoogendijk, J. & Stouthamer, A. H. (1987). Isolation and nucleotide sequence of the methanol dehydrogenase structural gene from Paracoccus denitrificans. J Bacteriol 169, 3969-3975.
20. Hektor, H. J., Kloosterman, H. & Dijkhuizen, L. (2000). Nicotino-protein methanol dehydrogenase enzymes in Gram-positive methylotrophic bacteria. J Mol Catal B Enzym 8, 103-109.
21. Hektor, H. J., Kloosterman, H. & Dijkhuizen, L. (2002). Identification of a magnesium-dependent NAD(P)(H)-binding domain in the nicotinoprotein methanol dehydrogenase from Bacillus methanolicus. J Biol Chem 277, 46966-46973.
22. Howard, N. S., Gomez, J. E., Ko, C. & Bishai, W. R. (1995). Color selection with a hygromycin-resistance-based Escherichia coli-mycobacterial shuttle vector. Gene 166, 181-182.
23. Jakobsen, Ø. M., Benichou, A., Flickinger, M. C., Valla, S., Ellingsen, T. E. & Brautaset, T. (2006). Upregulated transcription of plasmid and chromosomal ribulose monophosphate pathway genes is critical for methanol assimilation rate and methanol tolerance in the methylotrophic bacterium Bacillus methanolicus. J Bacteriol 188, 3063-3072.
24. Kalyuzhnaya, M. G., Hristova, K. R., Lidstrom, M. E. & Chistoserdova, L. (2008). Characterization of a novel methanol dehydrogenase in representatives of Burkholderiales: implications for environmental detection of methylotrophy and evidence for convergent evolution. J Bacteriol 190, 3817-3823.
25. Kato, N., Tsuji, K., Tani, Y. & Ogata, K. (1975). Utilization of methanol by an actinomycete. In Microbial Growth on C1 Compounds, pp. 91-98. Proceedings of the 1st International Symposium. Tokyo, Japan: Society of Fermentation Technology.
26. Kim, Y. M. & Hegeman, G. D. (1981). Purification and some properties of carbon monoxide dehydrogenase from Pseudomonas carboxydohydrogena. J Bacteriol 148, 904-911.
27. Lidstrom, M. E. & Stirling, D. I. (1990). Methylotrophs: genetics and commercial applications. Annu Rev Microbiol 44, 27-58.
28. Mehta, R. J. (1975). Pyridine nucleotide-linked oxidation of methanol in methanol-assimilating yeast. J Bacteriol 124, 1165-1167.
29. Morris, C. J., Kim, Y. M., Perkins, K. E. & Lidstrom, M. E. (1995). Identification and nucleotide sequences of mxaA, mxaC, mxaK, mxaL and mxaD genes from Methylobacterium extorquens AM1. J Bacteriol 177, 6825-6831.
30. Nagy, I., Verheijen, S., De Schrijver, A., Van Damme, J., Proost, P., Schoofs, G., Vanderleyden, J. & De Mot, R. (1995). Characterization of the Rhodococcus sp. NI86/21 gene encoding alcohol: N,N′- dimethyl-4-nitrosoaniline oxidoreductase inducible by atrazine and thiocarbamate herbicides. Arch Microbiol 163, 439-446.
31. Parish, T. & Stoker, N. G. (2000). Use of a flexible cassette method to generate a double unmarked Mycobacterium tuberculosis tlyA plcABC mutant by gene replacement. Microbiology 146, 1969-1975.
32. Park, S. W., Hwang, E. H., Park, H., Kim, J. A., Heo, J., Lee, K. H., Song, T., Kim, E., Ro, Y. T. & other authors (2003). Growth of mycobacteria on carbon monoxide and methanol. J Bacteriol 185, 142-147.
33. Reid, M. F. & Fewson, C. A. (1994). Molecular characterization of microbial alcohol dehydrogenases. Crit Rev Microbiol 20, 13-56.
34. +-dependent alcohol dehydrogenase. Purification and properties. Eur J Biochem 167, 475-479.
35. Ro, Y. T., Eom, C. Y., Song, T. S., Cho, J. W. & Kim, Y. M. (1997a). Dihydroxyacetone synthase from a methanol-utilizing carboxydobacterium, Acinetobacter sp. strain JC1 DSM 3803. J Bacteriol 179, 6041-6047.
36. Ro, Y. T., Seo, J. G., Lee, J. H., Kim, D. M., Chung, I. K., Kim, T. U. & Kim, Y. M. (1997b). Growth on methanol of a carboxydobacterium, Acinetobacter sp. strain JC1 DSM 3803. J Microbiol 35, 30-39.
37. Sambrook, J. & Russell, D. W. (2001). Molecular Cloning: a Laboratory Manual, 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
38. Sanger, F., Nicklen, S. & Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci U S A 74, 5463-5467.
39. Seo, J. G., Park, S. W., Park, H., Kim, S. Y., Ro, Y. T., Kim, E., Cho, J. W. & Kim, Y. M. (2007). Cloning, characterization and expression of a gene encoding dihydroxyacetone synthase in Mycobacterium sp. strain JC1 DSM 3803. Microbiology 153, 4174-4182.
40. Song, T., Lee, H., Park, Y. H., Kim, E., Ro, Y. T., Kim, S. W. & Kim, Y. M. (2002). Reclassification of a carboxydobacterium, Acinetobacter sp. strain JC1 DSM 3803, as Mycobacterium sp. strain JC1 DSM 3803. J Microbiol 40, 237-240.
41. Stephens, R. L, Haygood, M. G. & Lidstrom, M. E. (1988). Identification of putative methanol dehydrogenase (moxF) structural genes in methylotrophs and cloning of moxF genes from Methylococcus capsulatus bath and Methylomonas albus BG8. J Bacteriol 170, 2063-2069.
42. Tani, Y., Miya, T. & Ogata, K. (1972). The microbial metabolism of methanol. Part II. Properties of crystalline alcohol oxidase from Kloeckera sp. no. 2201. Agric Biol Chem 36, 76-83.
43. Toyama, H, Inagaki, H, Matsushita, K, Anthony, C. & Adachi, O. (2003). The role of the MxaD protein in the respiratory chain of Methylobacterium extorquens during growth on methanol. Biochim Biophys Acta 1647, 372-375.
44. van Ophem, P. W, van Beeumen, J. & Duine, J. A. (1993). Nicotinoprotein [NAD(P)-containing] alcohol/aldehyde oxidoreductases. Purification and characterization of a novel type from Amycolatopsis methanolica. Eur J Biochem 212, 819-826.
45. van Spanning, R. J, Wansell, C. W., De Boer, T. Hazelaar, M. J., Anazawa, H, Harms, N., Oltmann, L F. & Stouthamer, A. H. (1991). Isolation and characterization of the moxJ, moxG, moxI, and moxR genes of Paracoccus denitrificans: inactivation of moxJ, moxG, and moxR and the resultant effect on methylotrophic growth. J Bacteriol 173,6948-6961.
46. Vonck J., Arfman, N., Devries, G. E,, Vanbeeumen, J., Vanbruggen, E. F. J. & Dijkhuizen, L. (1991). Electron microscopic analysis and biochemical characterization of a novel methanol dehydrogenase from the thermotolerant Bacillus sp. C1. J Biol Chem 266, 3949-3954.
47. von Wartburg, J. P, Bethune, J. L & Vallee, B. L (1964). Human liver-alcohol dehydrogenase. Kinetic and physicochemical properties. Biochemistry 3, 1775-1782.
48. Xu, H. H, Viebahn, M. & Hanson, R. S. (1993). Identification of methanol-regulated promoter sequences from the facultative methylotrophic bacterium Methylobacterium organophilum XX. J Gen Microbiol 139, 743-752.
49. Zhang, M. & Lidstrom, M. E (2003). Promoters and transcripts for genes involved in methanol oxidation in Methylobacterium extorquens AM1. Microbiology 149, 1033-1040.