메뉴 건너뛰기




Volumn 277, Issue 5, 2010, Pages 1284-1296

Crystal structure of Klebsiella sp. ASR1 phytase suggests substrate binding to a preformed active site that meets the requirements of a plant rhizosphere enzyme

Author keywords

Dephosphorylation; Phytase; Plant rhizosphere enzyme; Preformed substrate binding site; Protein structure

Indexed keywords

ACID PHOSPHATASE PROSTATE ISOENZYME; ASR1 PHYTASE; ENZYME; PHYTASE; PHYTATE; PHYTIC ACID; POLYPEPTIDE; SCAVENGER; SULFATE; UNCLASSIFIED DRUG;

EID: 76349089524     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2010.07559.x     Document Type: Article
Times cited : (31)

References (40)
  • 1
    • 41349092313 scopus 로고    scopus 로고
    • Phytate: Impact on environment and human nutrition. A challenge for molecular breeding
    • Bohn L, Meyer AS Rasmussen SK (2008) Phytate: impact on environment and human nutrition. A challenge for molecular breeding. J Zhejiang Univ Sci B 9, 165 191.
    • (2008) J Zhejiang Univ Sci B , vol.9 , pp. 165-191
    • Bohn, L.1    Meyer, A.S.2    Rasmussen, S.K.3
  • 2
    • 0034112051 scopus 로고    scopus 로고
    • Phytic acid and phosphorus in crop seeds and fruits: A global estimate
    • Lott JNA, Ockenden I, Raboy V Batten DB (2000) Phytic acid and phosphorus in crop seeds and fruits: a global estimate. Seed Sci Res 10, 11 33.
    • (2000) Seed Sci Res , vol.10 , pp. 11-33
    • Lott, J.N.A.1    Ockenden, I.2    Raboy, V.3    Batten, D.B.4
  • 3
    • 85056522612 scopus 로고    scopus 로고
    • A global estimate of phytic acid and phosphorus in crop seeds, gains and fruits
    • Reddy, N.R. Sathe, S.K. eds), pp. CRC Press LLC. Boca Raton, FL.
    • Lott JNA, Ockenden I, Raboy V Batten GD (2002) A global estimate of phytic acid and phosphorus in crop seeds, gains and fruits. In Food Phytates (Reddy NR Sathe SK, eds), pp. 7 24. CRC Press LLC, Boca Raton, FL.
    • (2002) Food Phytates , pp. 7-24
    • Lott, J.N.A.1    Ockenden, I.2    Raboy, V.3    Batten, G.D.4
  • 5
    • 0033952704 scopus 로고    scopus 로고
    • Crystal structures of Escherichia coli phytase and its complex with phytate
    • Lim D, Golovan S, Forsberg CW Jia Z (2000) Crystal structures of Escherichia coli phytase and its complex with phytate. Nat Struct Biol 7, 108 113.
    • (2000) Nat Struct Biol , vol.7 , pp. 108-113
    • Lim, D.1    Golovan, S.2    Forsberg, C.W.3    Jia, Z.4
  • 6
    • 33749861588 scopus 로고    scopus 로고
    • Myo-inositol phosphate isomers generated by the action of a phytate-degrading enzyme from Klebsiella terrigena on phytate
    • Greiner R Carlsson NG (2006) Myo-inositol phosphate isomers generated by the action of a phytate-degrading enzyme from Klebsiella terrigena on phytate. Can J Microbiol 52, 759 768.
    • (2006) Can J Microbiol , vol.52 , pp. 759-768
    • Greiner, R.1    Carlsson, N.G.2
  • 7
    • 0345257904 scopus 로고    scopus 로고
    • The term phytase comprises several different classes of enzymes
    • Mullaney EJ Ullah AH (2003) The term phytase comprises several different classes of enzymes. Biochem Biophys Res Commun 312, 179 184.
    • (2003) Biochem Biophys Res Commun , vol.312 , pp. 179-184
    • Mullaney, E.J.1    Ullah, A.H.2
  • 8
    • 1642578253 scopus 로고    scopus 로고
    • Biochemical properties and substrate specificities of alkaline and histidine acid phytases
    • Oh BC, Choi WC, Park S, Kim YO Oh TK (2004) Biochemical properties and substrate specificities of alkaline and histidine acid phytases. Appl Microbiol Biotechnol 63, 362 372.
    • (2004) Appl Microbiol Biotechnol , vol.63 , pp. 362-372
    • Oh, B.C.1    Choi, W.C.2    Park, S.3    Kim, Y.O.4    Oh, T.K.5
  • 9
    • 0026446318 scopus 로고
    • Overexpression, site-directed mutagenesis, and mechanism of Escherichia coli acid phosphatase
    • Ostanin K, Harms EH, Stevis PE, Kuciel R, Zhou MM Van Etten RL (1992) Overexpression, site-directed mutagenesis, and mechanism of Escherichia coli acid phosphatase. J Biol Chem 267, 22830 22836.
    • (1992) J Biol Chem , vol.267 , pp. 22830-22836
    • Ostanin, K.1    Harms, E.H.2    Stevis, P.E.3    Kuciel, R.4    Zhou, M.M.5    Van Etten, R.L.6
  • 10
    • 0026535321 scopus 로고
    • Hydrolysis of phosphate monoesters: A biological problem with multiple chemical solutions
    • Vincent JB, Crowder MW Averill BA (1992) Hydrolysis of phosphate monoesters: a biological problem with multiple chemical solutions. Trends Biochem Sci 17, 105 110.
    • (1992) Trends Biochem Sci , vol.17 , pp. 105-110
    • Vincent, J.B.1    Crowder, M.W.2    Averill, B.A.3
  • 11
    • 0027340545 scopus 로고
    • Asp304 of Escherichia coli acid phosphatase is involved in leaving group protonation
    • Ostanin K Van Etten RL (1993) Asp304 of Escherichia coli acid phosphatase is involved in leaving group protonation. J Biol Chem 268, 20778 20784.
    • (1993) J Biol Chem , vol.268 , pp. 20778-20784
    • Ostanin, K.1    Van Etten, R.L.2
  • 12
    • 0033952605 scopus 로고    scopus 로고
    • Characterization and overproduction of the Escherichia coli appA encoded bifunctional enzyme that exhibits both phytase and acid phosphatase activities
    • Golovan S, Wang G, Zhang J Forsberg CW (2000) Characterization and overproduction of the Escherichia coli appA encoded bifunctional enzyme that exhibits both phytase and acid phosphatase activities. Can J Microbiol 46, 59 71.
    • (2000) Can J Microbiol , vol.46 , pp. 59-71
    • Golovan, S.1    Wang, G.2    Zhang, J.3    Forsberg, C.W.4
  • 13
    • 0042232023 scopus 로고    scopus 로고
    • Functional insights revealed by the crystal structures of Escherichia coli glucose-1-phosphatase
    • Lee DC, Cottrill MA, Forsberg CW Jia Z (2003) Functional insights revealed by the crystal structures of Escherichia coli glucose-1-phosphatase. J Biol Chem 278, 31412 31418.
    • (2003) J Biol Chem , vol.278 , pp. 31412-31418
    • Lee, D.C.1    Cottrill, M.A.2    Forsberg, C.W.3    Jia, Z.4
  • 15
    • 0036064383 scopus 로고    scopus 로고
    • Extracellular phytase activity of Bacillus amyloliquefaciens FZB45 contributes to its plant-growth-promoting effect
    • Idriss EE, Makarewicz O, Farouk A, Rosner K, Greiner R, Bochow H, Richter T Borriss R (2002) Extracellular phytase activity of Bacillus amyloliquefaciens FZB45 contributes to its plant-growth-promoting effect. Microbiology 148, 2097 2109.
    • (2002) Microbiology , vol.148 , pp. 2097-2109
    • Idriss, E.E.1    Makarewicz, O.2    Farouk, A.3    Rosner, K.4    Greiner, R.5    Bochow, H.6    Richter, T.7    Borriss, R.8
  • 17
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • Holm L Sander C (1993) Protein structure comparison by alignment of distance matrices. J Mol Biol 233, 123 138.
    • (1993) J Mol Biol , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 18
    • 13444293033 scopus 로고    scopus 로고
    • Conservation of cysteine residues in fungal histidine acid phytases
    • Mullaney EJ Ullah AH (2005) Conservation of cysteine residues in fungal histidine acid phytases. Biochem Biophys Res Commun 328, 404 408.
    • (2005) Biochem Biophys Res Commun , vol.328 , pp. 404-408
    • Mullaney, E.J.1    Ullah, A.H.2
  • 19
    • 0037457813 scopus 로고    scopus 로고
    • Crystal structures of human prostatic acid phosphatase in complex with a phosphate ion and α-benzylaminobenzylphosphonic acid update the mechanistic picture and offer new insights into inhibitor design
    • Ortlund E, LaCount MW Lebioda L (2003) Crystal structures of human prostatic acid phosphatase in complex with a phosphate ion and α-benzylaminobenzylphosphonic acid update the mechanistic picture and offer new insights into inhibitor design. Biochemistry 42, 383 389.
    • (2003) Biochemistry , vol.42 , pp. 383-389
    • Ortlund, E.1    Lacount, M.W.2    Lebioda, L.3
  • 20
    • 2342501800 scopus 로고    scopus 로고
    • Crystal structure of a heat-resilient phytase from Aspergillus fumigatus, carrying a phosphorylated histidine
    • Xiang T, Liu Q, Deacon AM, Koshy M, Kriksunov IA, Lei XG, Hao Q Thiel DJ (2004) Crystal structure of a heat-resilient phytase from Aspergillus fumigatus, carrying a phosphorylated histidine. J Mol Biol 339, 437 445.
    • (2004) J Mol Biol , vol.339 , pp. 437-445
    • Xiang, T.1    Liu, Q.2    Deacon, A.M.3    Koshy, M.4    Kriksunov, I.A.5    Lei, X.G.6    Hao, Q.7    Thiel, D.J.8
  • 21
    • 0030501419 scopus 로고    scopus 로고
    • Use of non-crystallographic symmetry in protein structure refinement
    • Kleywegt GJ (1996) Use of non-crystallographic symmetry in protein structure refinement. Acta Crystallogr D 52, 842 857.
    • (1996) Acta Crystallogr D , vol.52 , pp. 842-857
    • Kleywegt, G.J.1
  • 22
    • 0036436456 scopus 로고    scopus 로고
    • Inositol phosphatase activity of the Escherichia coli agp-encoded acid glucose-1-phosphatase
    • Cottrill MA, Golovan SP, Phillips JP Forsberg CW (2002) Inositol phosphatase activity of the Escherichia coli agp-encoded acid glucose-1-phosphatase. Can J Microbiol 48, 801 809.
    • (2002) Can J Microbiol , vol.48 , pp. 801-809
    • Cottrill, M.A.1    Golovan, S.P.2    Phillips, J.P.3    Forsberg, C.W.4
  • 23
    • 0029064088 scopus 로고
    • High-level biosynthetic substitution of methionine in proteins by its analogs 2-aminohexanoic acid, selenomethionine, telluromethionine and ethionine in Escherichia coli
    • Budisa N, Steipe B, Demange P, Eckerskorn C, Kellermann J Huber R (1995) High-level biosynthetic substitution of methionine in proteins by its analogs 2-aminohexanoic acid, selenomethionine, telluromethionine and ethionine in Escherichia coli. Eur J Biochem 230, 788 796.
    • (1995) Eur J Biochem , vol.230 , pp. 788-796
    • Budisa, N.1    Steipe, B.2    Demange, P.3    Eckerskorn, C.4    Kellermann, J.5    Huber, R.6
  • 24
    • 0037349370 scopus 로고    scopus 로고
    • Facilities and methods for the high-throughput crystal structural analysis of human proteins
    • Heinemann U, Bussow K, Mueller U Umbach P (2003) Facilities and methods for the high-throughput crystal structural analysis of human proteins. Acc Chem Res 36, 157 163.
    • (2003) Acc Chem Res , vol.36 , pp. 157-163
    • Heinemann, U.1    Bussow, K.2    Mueller, U.3    Umbach, P.4
  • 25
    • 0027879008 scopus 로고
    • Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
    • Kabsch W (1993) Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J Appl Crystallogr 26, 795 800.
    • (1993) J Appl Crystallogr , vol.26 , pp. 795-800
    • Kabsch, W.1
  • 26
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski Z Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276, 307 326.
    • (1997) Methods Enzymol , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 28
    • 0033896691 scopus 로고    scopus 로고
    • Maximum-likelihood density modification
    • Terwilliger TC (2000) Maximum-likelihood density modification. Acta Crystallogr D 56, 965 972.
    • (2000) Acta Crystallogr D , vol.56 , pp. 965-972
    • Terwilliger, T.C.1
  • 30
    • 0030924992 scopus 로고    scopus 로고
    • Refinement of macromolecular structures by the maximum-likelihood method
    • Murshudov GN, Vagin AA Dodson EJ (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D 53, 240 255.
    • (1997) Acta Crystallogr D , vol.53 , pp. 240-255
    • Murshudov, G.N.1    Vagin, A.A.2    Dodson, E.J.3
  • 31
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • Jones TA, Zou JY, Cowan SW Kjeldgaard M (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 47, 110 119.
    • (1991) Acta Crystallogr A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 34
    • 13244281317 scopus 로고    scopus 로고
    • Coot: Model-building tools for molecular graphics
    • Emsley P Cowtan K (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr D 60, 2126 2132.
    • (2004) Acta Crystallogr D , vol.60 , pp. 2126-2132
    • Emsley, P.1    Cowtan, K.2
  • 35
    • 0027208581 scopus 로고
    • Purification and characterization of two phytases from Escherichia coli
    • Greiner R, Konietzny U Jany KD (1993) Purification and characterization of two phytases from Escherichia coli. Arch Biochem Biophys 303, 107 113.
    • (1993) Arch Biochem Biophys , vol.303 , pp. 107-113
    • Greiner, R.1    Konietzny, U.2    Jany, K.D.3
  • 39
    • 0028922586 scopus 로고
    • LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
    • Wallace AC, Laskowski RA Thornton JM (1995) LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions. Protein Eng 8, 127 134.
    • (1995) Protein Eng , vol.8 , pp. 127-134
    • Wallace, A.C.1    Laskowski, R.A.2    Thornton, J.M.3
  • 40
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG Gibson TJ (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673 4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.