Evolutionary history of DLA class II haplotypes in canine diabetes mellitus through single nucleotide polymorphism genotyping

Tissue Antigens

Volumn 75, Issue 3, 2010, Pages 218-226

  Seddon, J M ^a   Berggren, K T ^b   Fleeman, L M ^c  

^a UNIVERSITY OF QUEENSLAND   (Australia)

^b UPPSALA UNIVERSITY   (Sweden)

^c UNIVERSITY OF SYDNEY   (Australia)

Author keywords

Canine major histocompatibility complex; Diabetes mellitus; DLA; Haplotypes

Indexed keywords

HLA A2 ANTIGEN;

ANIMAL TISSUE; ARTICLE; BLOOD SAMPLING; CONTROLLED STUDY; DIABETES MELLITUS; DOG; EVOLUTION; EXON; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC ASSOCIATION; GENETIC SUSCEPTIBILITY; GENOTYPE; HAPLOTYPE; HYPERGLYCEMIA; MAJOR HISTOCOMPATIBILITY COMPLEX; NONHUMAN; POLYDIPSIA; POLYURIA; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; WEIGHT REDUCTION;

ALLELES; ANIMALS; DIABETES MELLITUS; DOGS; EVOLUTION; HAPLOTYPES; HISTOCOMPATIBILITY ANTIGENS CLASS II; HLA ANTIGENS; LEUKOCYTES; LINKAGE DISEQUILIBRIUM; MAJOR HISTOCOMPATIBILITY COMPLEX; POLYMORPHISM, SINGLE NUCLEOTIDE;

CANIS FAMILIARIS;

EID: 76249084044     PISSN: 00012815     EISSN: 13990039     Source Type: Journal    
DOI: 10.1111/j.1399-0039.2009.01426.x     Document Type: Article

References (34)

1. Meyer D, Thomson G. How selection shapes variation of the human major histocompatibility complex: a review. Ann Hum Genet 2001 : 65 : 1 26.
2. Raymond CK, Kas A, Paddock M et al. Ancient haplotypes of the HLA Class II region. Genome Res 2005 : 15 : 1250 1257.
3. Beck S, Abdulla S, Alderton RP et al. Evolutionary dynamics of non-coding sequences within the class II region of the human MHC. J Mol Biol 1996 : 255 : 1 13.
4. Sutter NB, Eberle MA, Parker HG et al. Extensive and breed-specific linkage disequilibrium in Canis familiaris. Genome Res 2004 : 14 : 2388 2396.
5. Kennedy LJ, Barnes A, Happ GM et al. Extensive interbreed, but minimal intrabreed, variation of DLA class II alleles and haplotypes in dogs. Tissue Antigens 2002 : 59 : 194 204.
6. Kennedy LJ, Barnes A, Short A et al. Canine DLA diversity: 1. New alleles and haplotypes. Tissue Antigens 2007 : 69 (Suppl 1 272 288. (Pubitemid 46625900)
7. Sarmiento UM, DeRose S, Sarmiento JI, Storb R. Allelic variation in the DQ subregion of the canine major histocompatibility complex: II. DQB. Immunogenetics 1993 : 37 : 148 152.
8. Wagner JL, Burnett RC, Works JD, Storb R. Molecular analysis of DLA-DRBB1 polymorphism. Tissue Antigens 1996 : 48 : 554 561.
9. Kennedy LJ, Barnes A, Happ GM et al. Evidence for extensive DLA polymorphism in different dog populations. Tissue Antigens 2002 : 60 : 43 52.
10. Caillat-Zucman S. Molecular mechanisms of HLA association with autoimmune diseases. Tissue Antigens 2009 : 73 : 1 8.
11. Knip M, Siljander H. Autoimmune mechanisms in type 1 diabetes. Autoimmun Rev 2008 : 7 : 550 557.
12. Erlich H, Valdes AM, Noble J et al. HLA DR-DQ haplotypes and genotypes and type 1 diabetes risk: analysis of the type 1 diabetes genetics consortium families. Diabetes 2008 : 57 : 1084 1092.
13. Baschal EE, Eisenbarth GS. Extreme genetic risk for type 1A diabetes in the post-genome era. J Autoimmun 2008 : 31 : 1 6.
14. Catchpole B, Kennedy LJ, Davison LJ, Ollier WE. Canine diabetes mellitus: from phenotype to genotype. J Small Anim Pract 2008 : 49 : 4 10.
15. Kennedy LJ, Davison LJ, Barnes A et al. Identification of susceptibility and protective major histocompatibility complex haplotypes in canine diabetes mellitus. Tissue Antigens 2006 : 68 : 467 476.
16. Gorodezky C, Alaez C, Murguia A et al. HLA and autoimmune diseases: Type 1 diabetes (T1D) as an example. Autoimmun Rev 2006 : 5 : 187 194.
17. McKinnon E, Morahan G, Nolan D, James I. Association of MHC SNP genotype with susceptibility to type 1 diabetes: a modified survival approach. Diabetes Obes Metab 2009 : 11 (Suppl 1 92 100.
18. Husain Z, Kelly MA, Eisenbarth GS et al. The MHC type 1 diabetes susceptibility gene is centromeric to HLA-DQB1. J Autoimmun 2008 : 30 : 266 272.
19. Karlsson EK, Baranowska I, Wade CM et al. Efficient mapping of mendelian traits in dogs through genome-wide association. Nat Genet 2007 : 39 : 1321 1328.
20. Debenham SL, Hart EA, Ashurst JL et al. Genomic sequence of the class II region of the canine MHC: comparison with the MHC of other mammalian species. Genomics 2005 : 85 : 48 59.
21. Barrett JC, Fry B, Maller J, Daly MJ. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 2005 : 21 : 263 265.
22. Kennedy LJ, Barnes A, Short A et al. Canine DLA diversity: 3. Disease studies. Tissue Antigens 2007 : 69 (Suppl 1 292 296. (Pubitemid 46625902)
23. Berggren KT, Seddon JM. MHC promoter polymorphism in grey wolves and domestic dogs. Immunogenetics 2005 : 57 : 267 272.
24. Benoist C, Mathis D. Regulation of major histocompatibility complex class-II genes: X, Y and other letters of the alphabet. Annu Rev Immunol 1990 : 8 : 681 715.
25. Glimcher LH, Kara CJ. Sequences and factors: a guide to MHC class-II transcription. Annu Rev Immunol 1992 : 10 : 13 49.
26. Yunis EJ, Larsen CE, Fernandez-Vina M et al. Inheritable variable sizes of DNA stretches in the human MHC: conserved extended haplotypes and their fragments or blocks. Tissue Antigens 2003 : 62 : 1 20.
27. Alper CA, Larsen CE, Dubey DP, Awdeh ZL, Fici DA, Yunis EJ. The haplotype structure of the human major histocompatibility complex. Hum Immunol 2006 : 67 : 73 84.
28. Miretti MM, Walsh EC, Ke X et al. A high-resolution linkage- disequilibrium map of the human major histocompatibility complex and first generation of tag single-nucleotide polymorphisms. Am J Hum Genet 2005 : 76 : 634 646.
29. D'Alfonso S, Borelli I, Dall'Omo A et al. The natural history of an HLA haplotype and its recombinants. Immunogenetics 1998 : 48 : 8 15.
30. de Bakker PI, McVean G, Sabeti PC et al. A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC. Nat Genet 2006 : 38 : 1166 1172.
31. Walsh EC, Mather KA, Schaffner SF et al. An integrated haplotype map of the human major histocompatibility complex. Am J Hum Genet 2003 : 73 : 580 590.
32. Berggren KT, Seddon JM. Allelic combinations of promoter and exon 2 in DQB1 in dogs and wolves. J Mol Evol 2008 : 67 : 76 84.
33. Shewey LM, Beaty JS, Andersen LC, Nepom GT. Differential expression of related HLA class II DQ beta genes caused by nucleotide variation in transcriptional regulatory elements. J Immunol 1992 : 148 : 1265 1273.
34. Britten AC, Mijovic CH, Barnett AH, Kelly MA. Differential expression of HLA-DQ alleles in peripheral blood mononuclear cells: alleles associated with susceptibility to and protection from autoimmune type 1 diabetes. Int J Immunogenet 2009 : 36 : 47 57.