Extracellular enzymes of cold-adapted bacteria from Arctic sea ice, Canada Basin

Polar Biology

Volumn 32, Issue 10, 2009, Pages 1539-1547

  Yu, Yong ^a   Li, Huirong ^a   Zeng, Yinxin ^a   Chen, Bo ^a  

^a POLAR RESEARCH INSTITUTE OF CHINA   (China)

Author keywords

Arctic; Cold active lipase; Extracellular enzymes; Psychrophilic; Psychrotolerant; Sea ice

Indexed keywords

ARCTIC ENVIRONMENT; BACTERIOLOGY; CHITIN; COLD TOLERANCE; DEGRADATION; ENZYME ACTIVITY; HETEROTROPHY; ISOLATED POPULATION; OXIC CONDITIONS; PHYLOGENETICS; SEA ICE; STARCH;

BACILLUS (BACTERIUM); BACILLUS FIRMUS; BACTERIA (MICROORGANISMS); COLWELLIA; JANIBACTER MELONIS; MARINOMONAS; PSEUDOALTEROMONAS; PSEUDOALTEROMONAS TETRAODONIS; PSEUDOMONAS; SHEWANELLA;

EID: 76149125765     PISSN: 07224060     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00300-009-0654-x     Document Type: Article

References (58)

1. Aguilar A (1996) Extremophile research in European Union: from fundamental aspects to industrial expectations. FEMS Microbiol Rev 18: 89-92.
2. Bosshard PP, Santini Y, Grüter D et al (2000) Bacterial diversity and community composition in the chemocline of the meromictic alpine lake Cadagno a reveal by 16S rDNA analysis. FEMS Microbiol Ecol 31: 173-182.
3. Bowman JP (1998) Pseudoalteromonas prydzensis sp. nov., a psychotrophic, halotolerant bacterium from Antarctic sea ice. Int J Syst Bacteriol 48: 1037-1041.
4. Bowman JP (2007) Bioactive compound synthetic capacity and ecological significance of marine bacterial genus Pseudoalteromonas. Mar Drugs 5: 220-241.
5. Bowman JP, McMeekin TA (2005) Genus XI. Pseudoalteromonas. In: Brenner DJ, Krieg NR, Staley JT, Garrity GM (eds) Bergey's manual of systematic bacteriology, vol 2, 2nd edn. Springer, New York, pp 467-478.
6. Bowman JP, Brown MV, Nichols DS (1997a) Biodiversity and ecophysiology of bacteria associated with Antarctic sea ice. Antarct Sci 9: 134-142.
7. Bowman JP, McCammon SA, Brown MV et al (1997b) Diversity and association of psychrophilic bacteria in Antarctic sea ice. Appl Environ Microbiol 63: 3068-3078.
8. Brinkmeyer R, Knittel K, Jürgens J et al (2003) Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice. Appl Environ Microbiol 69: 6610-6619.
9. Brown MV, Bowman JP (2001) A molecular phylogenetic survey of sea-ice microbial communities (SIMCO). FEMS Microbiol Ecol 35: 267-275.
10. Chrost RJ (1991) Environmental control of the synthesis and activity of aquatic microbial ectoenzymes. In: Chrost RJ (ed) Microbial enzymes in aquatic environments. Springer, New York, pp 84-95.
11. Eicken H, Bock C, Wittig R et al (2000) Magnetic resonance imaging of sea ice pore fluids: methods and thermal evolution of pore microstructure. Cold Reg Sci Technol 31: 207-225.
12. Feller G, Narinx E, Arpigny JL et al (1996) Enzymes from psychrophilic organisms. FEMS Microbiol Rev 18: 189-202.
13. Gauthier G, Gauthier M, Christen R (1995) Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes encoding small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations. Int J Syst Bacteriol 45: 755-761.
14. Gosink JJ, Irgens RL, Staley JT (1993) Vertical distribution of bacteria in Arctic sea ice. FEMS Microbiol Ecol 102: 85-90.
15. Groudieva T, Kambourova M, Yusef H et al (2004) Diversity and cold-active hydrolytic enzymes of culturable bacteria associated with Arctic sea ice, Spitzbergen. Extremophiles 8: 475-488.
16. Haas C, Gerland S, Eicken H et al (1997) Comparison of sea ice thickness measurements under summer and winter conditions in the Arctic using a small electromagnetic induction device. Geophysics 62: 749-757.
17. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
18. Helmke E, Weyland H (1995) Bacteria in sea ice and underlying water of the eastern Weddell Sea in midwinter. Mar Ecol Prog Ser 117: 269-288.
19. Holmström C, Kjelleberg S (1999) Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents. FEMS Microbiol Ecol 30: 285-293.
20. Hoppe HG (1991) Microbial extracellular enzyme activity: a new key parameter in aquatic ecology. In: Chrost RJ (ed) Microbial enzymes in aquatic environments. Springer, New York, pp 60-83.
21. Horner RA, Ackley SF, Dieckmann GS et al (1992) Ecology of sea ice biota: 1. Habitat, terminology, and methodology. Polar Biol 12: 417-427.
22. Hoyoux A, Jennes I, Dubois P et al (2001) Cold-adapted β-galactosidase from the Antarctic psychrophile Pseudoalteromonas haloplanktis. Appl Environ Microbiol 67: 1529-1535.
23. Huston AL (2008) Biotechnological aspects of cold-adapted enzymes. In: Margesin R, Schinner F, Max J-C, Gerday C (eds) Psychrophiles: from biodiversity to biotechnology. Springer, Heidelberg, pp 347-363.
24. Huston AL, Krieger-Brockett BB, Deming JW (2000) Remarkably low temperature optima for extracellular enzyme activity from Arctic bacteria and sea ice. Environ Microbiol 2: 383-388.
25. Ivanova EP, Sawabe T, Lysenko AM et al (2002) Pseudoalteromonas translucida sp. nov. and Pseudoalteromonas paragorgicola sp. nov., and emended description of the genus. Int J Syst Evol Microbiol 52: 1759-1766.
26. Jaeger KE, Eggert T (2002) Lipases for biotechnology. Curr Opin Biotechnol 13: 390-397.
27. Jaeger KE, Dijkstra BW, Reetz MT (1999) Bacterial biocatalysts: molecular biology, three-dimensional structures, and biotechnological applications of lipases. Annu Rev Microbiol 53: 315-351.
28. Joseph B, Ramteke PW, Thomas G et al (2007) Cold-active microbial lipases: a versatile tool for industrial applications. Biotechnol Mol Biol Rev 2: 39-48.
29. Junge K, Imhoff F, Staley T et al (2002) Phylogenetic diversity of numerically important Arctic sea-ice bacteria cultured at subzero temperature. Microb Ecol 43: 315-332.
30. Krembs C, Eickenb H, Jungea K et al (2002) High concentrations of exopolymeric substances in Arctic winter sea ice: implications for the polar ocean carbon cycle and cryoprotection of diatoms. Deep-Sea Res Pt I 49: 2163-2181.
31. Margesin R, Feller G, Gerday C et al (2002) Cold adapted microorganisms: adaptation strategies and biotechnological potential. In: Bitton G (ed) The encyclopedia of environmental microbiology. Wiley, New York, pp 871-885.
32. Marx JC, Blaise V, Collins T et al (2004) A perspective on cold enzymes: current knowledge and frequently asked questions. Cell Mol Biol 50: 643-655.
33. Mock T, Thomas DN (2005) Recent advances in sea ice microbiology. Environ Microbiol 7: 605-619.
34. Morita RY (1975) Psychrophilic bacteria. Bacteriol Rev 39: 44-167.
35. Nichols CM, Garon S, Bowman JP et al (2004) Production of exopolysaccharides by Antarctic marine bacterial isolates. J Appl Microbiol 96: 1057-1066.
36. Nichols CM, Lardière SG, Bowman JP et al (2005) Chemical characterization of exopolysaccharides from Antarctic marine bacteria. Microb Ecol 49: 578-589.
37. Palmisano AC, Garrison DL (1993) Microorganisms in Antarctic sea ice. In: Friedmann EI (ed) Antarctic microbiology. Wiley-Liss, New York, pp 167-219.
38. Reichardt W (1988) Impact of the Antarctic Benthic fauna on the enrichment of biopolymer degrading psychrophilic bacteria. Microb Ecol 15: 311-321.
39. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
40. Schinner F, Margesin R, Pümpel T (1992) Extracellular protease-producing psychrotrophic bacteria from high Alpine habitats. Arctic Alpine Res 24: 88-92.
41. Schmid A, Dordick JS, Hauer B et al (2001) Industrial biocatalysis today and tomorrow. Nature 409: 258-268.
42. Spiegelman D, Whissell G, Greer CW (2005) A survey of the methods for the characterization of microbial consortia and communities. Can J Microbiol 51: 355-386.
43. Srimathi S, Jayaraman G, Feller G et al (2007) Intrinsic halotolerance of the psychrophilic α-amylase from Pseudoalteromonas haloplanktis. Extremophiles 11: 505-515.
44. Stackebrandt E, Ebers J (2006) Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33: 152-155.
45. Straathof AJ, Panke S, Schmid A (2002) The production of fine chemicalsby biotransformations. Curr Opin Biotechnol 13: 548-556.
46. Sullivan CW, Palmisano AC (1984) Sea ice microbial communities: distribution, abundance, and diversity of ice bacteria in McMurdo Sound, Antarctica, in 1980. Appl Environ Microbiol 47: 788-795.
47. Suzuki MT, Rappé MS, Haimberger ZW et al (1997) Bacterial diversity among small-subunit rRNA Gene clones and cellular isolates from the same seawater sample. Appl Environ Microbiol 63: 983-989.
48. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
49. Teather RM, Wood PJ (1982) Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from bovine rumen. Appl Environ Microbiol 43: 777-780.
50. Thomas DN, Dieckmann GS (2002) Antarctic sea ice a habitat for extremophiles. Science 295: 641-644.
51. Thomas DN, Kattner G, Engbrodt R et al (2001) Dissolved organic matter in Antarctic sea ice. Ann Glaciol 33: 297-303.
52. Thompson JD, Gibson TJ, Plewniak F et al (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
53. Tian F, Yu Y, Chen B et al (2009) Bacterial, Archaeal and Eukaryotic diversity in Arctic sediment as revealed by 16S rRNA and 18S rRNA gene clone libraries analysis. Polar Biol 32: 93-103.
54. van den Burg B (2003) Extremophiles as a source for novel enzymes. Curr Opin Microbiol 6: 213-218.
55. Vetter YA, Deming JW (1999) Growth rates of marine bacterial isolates on particulate organic substrates solubilized by freely released extracellular enzymes. Microb Ecol 37: 86-94.
56. Wayne LG, Brenner DJ, Colwell RR et al (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37: 463-464.
57. West PA, Colwell RR (1984) Identification and classification of the Vibrionaceae-an overview. In: Colwell RR (ed) Vibrios in the environment. Wiley, Chichester, pp 285-363.
58. Zengler K, Toledo G, Rappé M et al (2002) Cultivating the uncultured. Proc Natl Acad Sci USA 99: 15681-15686.