Fine mapping of a gene causing hybrid pollen sterility between Yunnan weedy rice and cultivated rice (Oryza sativa L.) and phylogenetic analysis of Yunnan weedy rice

Planta

Volumn 231, Issue 3, 2010, Pages 559-570

  Wang, Yong ^a   Zhong, Zheng Zheng ^a   Zhao, Zhi Gang ^a   Jiang, Ling ^a   Bian, Xiao Feng ^a   Zhang, Wen Wei ^a   Liu, Ling Long ^a   Ikehashi, H ^c   Wan, Jian Min ^a,b  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

^b INSTITUTE OF PLANT PROTECTION   (China)

^c NIHON UNIVERSITY   (Japan)

Author keywords

Cytology; Fine mapping; Hybrid sterility; Phylogeny analysis; Pollen abortion; Weedy rice

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; CHROMOSOME MAP; FERTILITY; GENETIC POLYMORPHISM; GENETICS; GENOTYPE; HYBRIDIZATION; PHYLOGENY; PHYSIOLOGY; POLLEN; QUANTITATIVE TRAIT LOCUS; RICE;

CHROMOSOME MAPPING; FERTILITY; GENOTYPE; HYBRIDIZATION, GENETIC; MICROSATELLITE REPEATS; ORYZA SATIVA; PHYLOGENY; POLLEN; POLYMORPHISM, GENETIC; QUANTITATIVE TRAIT LOCI;

JAPONICA; ORYZA SATIVA; ZIZANIA;

EID: 76049111508     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-009-1063-7     Document Type: Article

References (47)

1. Basten CJ, Weir BS, Zeng ZB (1998) QTL CARTOGRAPHER: a reference manual and tutorial for QTL mapping. Department of Statistics, North Carolina State University, Raleigh.
2. Cao QJ, Lu BR, Xia H, Rong J, Frances S, Alberto S, Fabrizio G (2006) Genetic diversity and origin of weedy rice (Oryza sativa f. spontanea) populations found in North-eastern China revealed by simple sequence repeat (SSR) markers. Ann Bot 98: 1241-1252.
3. Chen ZJ, Zhu LH (1990) Preliminary studies on the relationship between Ludao and native rice varieties in Yunnan (Oryza sativa L.). Acta Agronomic Sinica 16(3): 219-227 (in Chinese with English summary).
4. Chen X, Temnykh S, Xu Y, Cho YG, McCouch SR (1997) Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.). Theor Appl Genet 95: 553-567.
5. Chen JJ, Ding JH, Ouyang YD, Du HY, Yang JY, Cheng K, Zhao J, Qiu SQ, Zhang XL, Yao JL, Liu KD, Wang L, Xu CG, Li XH, Xue YB, Xia M, Ji Q, Lu JF, Xu ML, Zhang QF (2008) A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice. Pro Natl Acad Sci USA 105: 11436-11441.
6. Cho YC, Chung TY, Suh HS (1995) Genetic characteristics of Korean weedy rice (Oryza sativa L.) by RFLP analysis. Euphytica 86: 103-110.
7. Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
8. Dellaporta SL, Wood J, Hicks JB (1983) A plant DNA mini preparation: version II. Plant Mol Biol Rep 1: 19-21.
9. Feng JH, Lu YG, Liu XD, Xu XB (2001) Pollen development and its stages in rice (Qryza sativa L.). Chin J Rice Sci 1: 21-28 (in Chinese with English summary).
10. Ferrero A, Vidotto F, Balsari P, Airoldi G (1999) Mechanical and chemical control of red rice (Oryza sativa L. Var. sylvatica) in rice (Oryza sativa L.) per-planting. Crop Prot 18: 245-251.
11. Grant V (1981) Plant speciation, 2nd edn. Columbia University Press, New York.
12. Heu MH, Cho YC, Suh HS (1990) Cross affinity of Korean weedy rice to the cultivars. Korean J Crop Sci 35: 233-238.
13. Ikehashi H (2008) Why are there indica type and japonica type in rice? History of the studies and a view for origin of two types. Rice Sci 16(1): 1-13.
14. Ikehashi H, Araki H (1986) Genetics of F1 sterility in remote crosses of rice. Rice Genetics (International Rice Research Institute, Manila), pp 119-130.
15. Ishikawa R, Toki N, Imai K, Sato YI, Yamagishi H, Shimamoto Y, Ueno K, Morishima H, Sato T (2005) Origin of weedy rice grown in Bhutan and the force of genetic diversity. Genet Res Crop Evol 52: 395-403.
16. Jing W, Zhang WW, Jiang L, Chen LM, Zhai HQ, Wan JM (2007) Two novel loci for pollen sterility in hybrids between the weedy strain Ludao and the Japonica variety Akihikari of rice (Oryza sativa L.). Theor Appl Genet 114: 915-925.
17. Kawasaki A, Imai K, Ushiki J, Ishii T, Ishikawa R (2009) Molecular constitution of weedy rice (Oryza sativa L.) found in Okayama prefecture, Japan. Breed Sci 59: 229-236.
18. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage map of experimental and natural populations. Genomics 1: 174-181.
19. Li H, Lin Y, Heath RM, Zhu MX, Yang Z (1999) Control of pollen tube tip growth by a Rop GTPase-dependent pathway that leads to tip-localized calcium influx. Plant Cell 11: 1731-1742.
20. Li DT, Chen LM, Jiang L, Zhu SS, Zhao ZG, Liu SJ, Su N, Zhai HQ, Ikehashi H, Wan JM (2007) Fine mapping of S32(t), a new gene causing hybrid embryo sac sterility in a Chinese landrace rice (Oryza sativa L.). Theor Appl Genet 114: 515-524.
21. Li WT, Zeng RZ, Zhang ZM, Ding XH, Zhang GQ (2008) Identification and fine mapping of S-d, a new locus conferring the partial pollen sterility of intersubspecific F1 hybrids in rice (Oryza sativa L.). Theor Appl Genet 116: 915-922.
22. Liu YS, Zhu LH, Sun JS, Chen Y (2001) Mapping QTLs for defective female gametophyte development in an inter-subspecific cross in Oryza sativa L. Theor Appl Genet 102: 1243-1251.
23. Londo J, Schaal B (2007) Origins and population genetics of weedy red rice in the USA. Mol Ecol 16: 4523-4535.
24. Long YM, Zhao LF, Niu BX, Su J, Wu H, Chen YL, Zhang QY, Guo JX, Zhuang CX, Mei MT, Xia JX, Wang L, Wu HB, Liu YG (2008) Hybrid male sterility in rice controlled by interaction between divergent alleles of two adjacent genes. Pro Natl Acad Sci USA 105: 18871-18876.
25. Mortimer M, Pandey S, Piggin C (2000) Weedy rice: approaches to ecological appraisal and implications for research priorities. In: Baki BB, Chin DV, Mortimer M (eds) Proceedings of wild and weedy rice in rice ecosystems in Asia. A review. International Rice Research Institute, Los Banos, pp 97-105.
26. Nei M (1987) Molecular evolutionary genetics. Columbia University Press, New York, pp 106-107.
27. Olsen KM, Caicedo A, Jia YL (2007) Evolutionary genomics of weedy rice in the USA. J Integr Plant Biol 49: 811-816.
28. Park SK, Howden R, Twell D (1998) The Arabidopsis thaliana gametophytic mutation gemini pollen1 disrupts microspore polarity, division asymmetry and pollen cell fate. Development 125: 3789-3799.
29. Rohlf EJ (1992) Numerical taxonomy and multivariate analysis system, NTSYS-pc program. Applied Biostatistics Inc., 3 Heritage lane, Setauket, NY 11733.
30. Sanguinetti CJ, Dias NE, Simpson AJG (1994) Rapid silver staining and recover of PCR products separated on polyacrylamide gels. Biotechniques 17: 915-919.
31. Suh HS, Ha WG (1993) Collection and evaluation of Korean red rices V. Germination characteristics on different water and soil depth. Korean J Crop Sci 38: 128-133.
32. Suh HS, Park SZ, Heu MH (1992) Collection and evaluation of Korean red rice. I. Regional distribution and seed characters. Korean J Crop Sci 37: 425-430 (in Korean with English Summary).
33. Suh HS, Sato YI, Morishima H (1997) Genetic characterization of weedy rice (Oryza sativa L.) based on morpho-physiology, isozymes and RAPD markers. Theor Appl Genet 94: 316-321.
34. Tang LH, Morishima H (1997) Genetic characterization of weedy rices and inference on their origins. Breed Sci 47: 153-160.
35. Wan JM, Ikehashi H (1995) Identification of a new locus S-16 causing hybrid sterility in native rice varieties (Oryza sativa L.) from Tai-hu Lake region and Yunnan province, China. Breed Sci 45: 161-170.
36. Wan JM, Ikehashi I (1996) List of hybrid sterility gene loci (HSGLi) in cultivated rice (Oryza sativa L.). Rice Genet Newsl 13: 110-114.
37. Wan JM, Ikehashi H (1997) Identification of two types of diffierentiation in cultivated rice (Oryza sativa L.) detected by polymorphism of isozymes and hybrid sterility. Euphytica 94: 151-16.
38. Wan JM, Yanagihara S, Kato H, Ikehashi H (1993) Multiple alleles at a new locus causing hybrid sterility between a Korean indica variety and japonica variety in rice. Jpn J Breed 43: 507-516.
39. Wan JM, Yamaguchi Y, Kato H, Ikehashi H (1996) Two new loci for hybrid sterility in cultivated rice (Oryza sativa L.). Theor Appl Genet 92: 183-190.
40. Wang YX, Yan JQ, Xue ZQ, Shen SQ (1991) Cytological studies on partial male sterility of F1 hybrids between subspecies in Rice. Acta Agriculturae Universitatis Zhejiangensis 17(4): 417-422.
41. Wang GW, He YQ, Xu CG, Zhang QF (2006) Fine mapping of f5-Du, a gene conferring wide-compatibility for pollen fertility in inter-subspecific hybrids of rice (Oryza sativa L.). Theor Appl Genet 112: 382-387.
42. Yanagihara S, Kato H, Ikehashi H (1992) A new locus for multiple alleles causing hybrid sterility between an Aus variety and javanica varieties in rice (Oryza sativa L.). Jpn J Breed 42: 793-801.
43. Zhang QF, Shen BZ, Dai XK, Mei MH, Saghai Maroof MA, Li ZB (1994) Using bulked extremes and recessive class to map genes for photoperiod-sensitive genic male sterility in rice. Proc Natl Acad Sci USA 91: 8675-8679.
44. Zhang QF, Liu KD, Yang GP, Saghai Maroof MA, Xu CG, Zhou ZQ (1997) Molecular marker diversity and hybrid sterility in indica-japonica rice crosses. Theor Appl Genet 95: 112-118.
45. Zhao ZG, Jiang L, Zhang WW, Yu CY, Zhu SS, Xie K, Tian H, Liu LL, Ikehashi H, Wan JM (2007) Fine mapping of S31, a gene responsible for hybrid embryo-sac abortion in rice (Oryza sativa L.). Planta 226: 1087-1096.
46. Zhu XH, Cao XZ, Zhu QS (1996) Cytological studies on spikelet sterility of Indica-Japonica hybrids in Rice. Chin J Rice Sci 10(2): 71-78 (in Chinese with English summary).
47. Zhu SS, Jiang L, Wang CC, Zhai HQ, Li DT, Wan JM (2005) The origin of a weedy rice Ludao in China deduced by a genome wide analysis of its hybrid sterility genes. Breed Sci 55: 409-414.