Can Pseudo-nitzschia blooms be modeled by coastal upwelling in Lisbon Bay?

Harmful Algae

Volumn 9, Issue 3, 2010, Pages 294-303

  Palma, Sofia ^a   Mouriño, Helena ^b   Silva, Alexandra ^a   Barão, Maria Isabel ^b   Moita, Maria Teresa ^a  

^a INSTITUTO PORTUGUÊS DO MAR E DA ATMOSFERA   (Portugal)

^b UNIVERSITY OF LISBON   (Portugal)

Author keywords

Portugal; Pseudo nitzschia; Time series analysis; Upwelling; Zero Inflated Generalized Poisson distribution

Indexed keywords

BACILLARIOPHYTA; PSEUDO-NITZSCHIA;

EID: 76049104909     PISSN: 15689883     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.hal.2009.11.006     Document Type: Article

References (53)

1. Abrantes F., and Moita M.T. Water column and recent sediment record data on diatom and coccolithophorids, off Portugal, confirm sediment record of upwelling events. Oceanol. Acta 22 (1999) 319-336
2. Alvarez-Salgado X.A., Figueiras F.G., Pérez F.F., Groom S., Nogueira E., Borges A., Chou L., Castro C.G., Moncoiffe G., Ríos A.F., Miller A.E.J., Frankignoulle M., Savidge G., and Wollast R. The Portugal coastal counter current off NW Spain: new insights on its biogeochemical variability. Progr. Oceanogr. 56 (2003) 281-321
3. Bates S.S. Ecophysiology and metabolism of ASP toxin production. In: Anderson D., Cembella A., and Hallegraeff G.M. (Eds). Physiological Ecology of Harmful Algal Blooms. NATO ASI Series, G-41 (1998), Springer-Verlag, Heidelberg 405-426
4. Bakun, A., 1973. Coastal upwelling indices west cost North America. 1946-71 NOAA Tech. Rept. NMFS SSRF-671. 103 pp.
5. Brogueira M.J., Oliveira M.R., and Cabeçadas G. Phytoplankton community structure defined by key environmental variables in Tagus estuary, Portugal. Mar. Environ. Res. 64 (2007) 616-628
6. Chatfield C. The Analysis of Time Series-An Introduction. 4th ed. (1989), Chapman and Hall, London 241 pp.
7. Consul P.C., and Jain G.C. On the generalization of Poisson distribution. Ann. Math. Stat. 41 (1970) 1387
8. Consul P.C., and Jain G.C. A generalization of the Poisson distribution. Technometrics 15 (1973) 791-799
9. Costa P.R., and Garrido S. Domoic acid accumulation in the sardine Sardina pilchardus and its relationship to Pseudo-nitzschia diatom ingestion. Mar. Ecol. Prog. Ser. 284 (2004) 261-268
10. Cuadrado M.M.S., Díaz F., Fdez-Riverola F., Corchado J.M., and Torres J.M. Sea surface temperatures of northwest coast of the Iberian Peninsula using AVHRR data in order to detect Pseudo-nitzschia spp. blooms. Book of abstracts of Xth International Conference on Harmful Algae. St Pete Beach, Florida, USA (2002) 63
11. Czado C., Erhardt V., Min A., and Wagner S. Zero-inflated generalized Poisson models with regression effects on the mean, dispersion and zero-inflation level applied to patent outsourcing rates. Statistical Modelling 7 2 (2007) 125-153
12. Famoye F., and Rothe D.E. Variable selection for Poisson regression model. Proceedings of the Annual Meeting of the American Statistical Association, August 5-9 (2001)
13. Famoye F., and Singh K.P. Zero-inflated generalized Poisson regression model with an application to domestic violence. J. Data Sci. 4 (2006) 117-130
14. Fehling J., Davidson K., Bolch C., and Tett P. Seasonality of Pseudo-nitzschia spp. (Bacillariophyceae) in western Scottish waters. Mar. Ecol. Prog. Ser. 323 (2006) 91-105
15. Figueiras F.G., Labarta U., and Fernández Reiriz M.J. Coastal upwelling, primary production and mussel growth in the Rías Baixas of Galicia. Hydrobiologia 484 (2002) 121-131
16. Fiúza A.F.G., Macedo M.E., and Guerreiro M.R. Climatological space and time variation of Portuguese coastal upwelling. Oceanol. Acta 5 (1982) 31-40
17. Fiúza A.F.G. Upwelling patterns off Portugal. In: Suess E., and Thiede J. (Eds). Coastal upwelling: Its sediment record, part A (1983), Plenum Press, New York 85-98
18. Fiúza, A.F.G., 1984. Hydrology and dynamics of the Portuguese coastal waters. Ph.D. Thesis. University of Lisbon. Lisbon, unpublished data.
19. Hasle G.R. The inverted microscope method. In: Sournia A. (Ed). Phytoplankton Manual. Monographs on Oceanic Methodology vol. 6 (1978), UNESCO, Paris 88-96
20. Hasle G.R. Pseudo-nitzschia as a genus distinct from Nitzschia (Bacillariophyceae). J. Phycol. 30 (1994) 1036-1039
21. Hasle G.R., and Syverstsen E.E. Marine diatoms. In: Tomas C.R. (Ed). Identifying Marine Diatoms and Dinoflagellates (1996), Academic Press, Inc., San Diego 1-385
22. Haynes R., and Barton E.D. A poleward flow along the Atlantic coast of the Iberian Peninsula. J. Geophys. Res. B 95 (1990) 11425-11441
23. Kudela R.M., Cochlan W.P., and Roberts A. Spatial and temporal patterns of Pseudo-nitzschia spp. in central California related to regional oceanography. In: Steidinger K.A., Landsberg J.H., Tomas C.R., and Vargo G.A. (Eds). Harmful Algal 2002 (2004), Intergovernmental Oceanographic Commission of UNESCO 347-349
24. Lundholm N., Daugbjerg N., and Moestrup O. Phylogeny of the Bacillariaceae with emphasis on the genus Pseudonitzschia (Bacillariophyceae) based on partial LSU rDNA. Eur. J. Phycol. 37 (2002) 115-134
25. Marchetti A., Trainer V.L., and Harrison P.J. Environmental conditions and phytoplankton dynamics associated with Pseudo-nitzschia abundance and domoic acid in the Juan de Fuca eddy. Mar. Ecol. Prog. Ser. 281 (2004) 1-12
26. Margalef R. Phytoplankton communities in upwelling areas. The example of NW Africa. Oecol. Aquat. 3 (1978) 97-132
27. Moghimbeigi A., Eshraghian M.R., Mohammad K., and McArdle B. Multilevel zero-inflated negative binomial regression modeling for over-dispersed count data with extra zeros. J. Appl. Stat. 35 (2008) 1193-1202
28. Moita, M.T., 2001. Estrutura, variabilidade e dinâmica do fitoplâncton na costa de Portugal Continental. Ph.D. Thesis. University of Lisbon, 272 pp.
29. Moita M.T., Oliveira P.B., Mendes J.C., and Palma A.S. Distribution of Chl a and Gymnodinium catenatum associated with coastal upwelling plumes off central Portugal. Acta Oecol. 24 (2003) 125-132
30. Nogueira E., Pérez F.F., and Ríos A.F. Seasonal patterns and longterm trends in an estuarine upwelling ecosystem (Ría de Vigo, NW Spain). Est. Coast. Shelf Sci. 44 (1997) 285-300
31. Nogueira E., and Figueiras F. The microplankton succession in the Ría de Vigo revisited: species assemblages and the role of weather-induced, hydrodynamic variability. J. Mar. Syst. 54 (2005) 139-155
32. Nykjaer L., and Van Camp L. Seasonal and interannual variability of coastal upwelling along northwest Africa and Portugal from 1981 to 1991. J. Geophys. Res. 99 (1994) 14197-14207
33. Oliveira P.B., Nolasco R., Dubert J., Moita T., and Peliz A. Surface temperature, chlorophyll and advection patterns during a summer upwelling event off central Portugal. Cont. Shelf Res. 29 (2009) 759-774
34. Özmen I., and Famoye F. Count regression models with an application to zoological data containing structural zeros. J. Data Sci. 5 (2007) 491-502
35. Palma, A.S., 2003. Estudo de um ciclo anual de sucessão fitoplanctónica na Baia de Cascais. M.Sc. Thesis. University of Porto, 64 pp.
36. Parsons L.M., Dortch Q., and Turner R.E. Sedimentological evidence of an increase in Pseudo-nitzschia (Bacillariophyceae) abundance in response to coastal eutrophication. Limnol. Oceanol. 47 (2002) 551-558
37. Platt T., and Denman K.L. Spectral analysis in ecology. Annu. Rev. Ecol. Syst. 6 (1975) 189-210
38. Prego R., Guzmán-Zuñiga D., Varela M., Castro M., and Gómez-Gesteira M. Consequences of winter upwelling events on biogeochemical and phytoplankton patterns in a western Galician ria (NW Iberian peninsula). Est. Coast. Shelf Sci. 73 (2007) 409-422
39. Priestley M.B. Spectral Analysis and Time Series (1981), Academic Press, London 653 pp.
40. Santolino, M., Boucher, J.P., 2009. Modelling the disability severity score in motor insurance claims: an application to the Spanish case. Working Papers 2009/02. Research Institute of Applied Economics, Barcelona, Spain.
41. Silva A., Palma S., Oliveira P.B., and Moita M.T. Composition and interannual variability of phytoplankton in a coastal upwelling region (Lisbon Bay, Portugal). J. Sea Res. 62 (2009) 238-249
42. Sousa F.M., and Bricaud A. Satellite-derived phytoplankton pigment structures in the Portuguese upwelling area. J. Geophys. Res. 97 (1992) 11343-11356
43. Spatharis S., Danielidis D.B., and Tsirtsis G. Recurrent Pseudo-nitzschia calliantha (Bacillariophyceae) and Alexandrium insuetum (Dinophyceae) winter blooms induced by agricultural runoff. Harmfull Algae 6 (2007) 811-822
44. Srivastava M., and Sen A. Regression Analysis-Theory. Methods and Applications (1990), Springer-Verlag Inc., New York 348 pp.
45. Therriault J.-C., and Plantt T. Environmental control of phytoplankton patchiness. J. Fish. Res. Bd. Can. 38 (1981) 368-641
46. Throndsen J. Preservation and storage. In: Sournia A. (Ed). Phytoplankton Manual. Monographs on Oceanic Methodology, vol. 6 (1978), UNESCO, Paris 69-74
47. Trainer V.L., Adans N.G., and Wekell J.C. Domoic acid-producing Pseudo-nitzschia species off the U.S. west coast associated with toxificationevents. In: Hallegraef G.M., Blackburn S.I., Bolch C.J., and Lewis R.J. (Eds). Harmfull Algal Blooms (2001), Intergovernmental Oceanographic Commission of UNESCO 46-49
48. Vale P., and Sampayo M.A. Domoic acid in Portuguese shellfish and fish. Toxicon 39 (2001) 893-904
49. Vitorino J.P.N. Circulação residual ao largo da costa NW de Portugal durante a estação de afloramento de 1987. Anais Instituto Hidrográfico 10 (1989) 25-37
50. Yentsch C.S., and Menzel D.W. A method for determination of phytoplankton Chl a and phaeophytin. Deep-Sea Res. 10 (1963) 221-231
51. Yip K.C.H., and Yau K.K.W. On modeling claim frequency data in general insurance with extra zeros. Insurance: Math. Econ. 36 (2005) 153-163
52. Wang P., and Alba J.D. A zero-inflated negative binomial regression model with hidden Markov chain. Econ. Lett. 92 (2006) 209-213
53. Wooster W.S., Bakun A., and Mclain D.R. The seasonal upwelling cycle along the eastern boundary of the North Atlantic. J. Mar. Res. 34 (1976) 131-141